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Class II viral fusion proteins C-terminal domain family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 18 significant domains in 18 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1i9wA   1.32e-61   0.0000996   293-390   1rer A:293-391  
1pjwA   4.37e-86   0.0000786   1-111   1pjw A:  
1s6nA   4.48e-85   0.0000487   5-115   1s6n A:  
1ztxE   1.31e-79   0.0000505   3-108   1s6n A:  
2alaA   1.26e-61   0.0000996   293-390   1rer A:293-391  
2p5pA   4.69e-83   0.0000532   3-111   1s6n A:  
 
Weak hits:
1ld4M   5.7e-66   0.0078   293-391   1rer A:293-391  
1svbA   1.75e-64   0.063   293-395   1svb A:303-395  
1z66A   2.07e-58   0.032   1-96   1z66 A:303-395  
2gg1A   2.62e-58   0.032   7-102   1z66 A:303-395  
2r29A   3.06e-71   0.086   1-97   1oke A:298-394  
2v33A   1.08e-54   0.00011   2-91   1rer A:293-391  

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Select to display   Genome       Domains   Proteins
No Yes ALL   30584 30584
No Yes NCBI 2017_08 genome   68 68
No Yes Uniprot 2018_03 genome   22435 22435
No Yes NCBI viral sequences (Viral)   49 49
No Yes PDB chains (SCOP 1.75) (PDB)   18 18
No Yes Protein Data Bank (all PDB sequenc)   32 32
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   453 453
No Yes TargetDB (Targets)   7 7
No Yes UniProt viral sequences (Viral)   7522 7522

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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