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Parvoviridae-like VP family domain assignments
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PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 11 significant domains in 11 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1c8dA   1.21e-250   0.00000000000000404   37-558   1c8d A:  
1c8gA   1.39e-251   0.00000000000000547   1-522   1c8d A:  
1fpvA   1.76e-251   0.00000000000000547   37-558   1c8d A:  
1k3vA   1.09e-208   0.00000000000000443   38-556   1k3v A:  
1lp3A   1.28e-245   0.00000000000000534   4-518   1lp3 A:  
1mvmA   9.42e-198   7.68e-16   28-587   1mvm A:  
1p5wA   5.1e-254   0.00000000000000498   1-522   1c8d A:  
1p5yA   2.23e-251   0.00000000000000473   1-522   1c8d A:  
1s58A   2.68e-192   0.0000000000000128   24-524   1s58 A:  
2casA   2.23e-253   0.00000000000000477   1-522   1c8d A:  
4dpvZ   2.78e-253   0.00000000000000477   37-558   1c8d A:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   10235 10235
No Yes Rattus norvegicus 76_5.0 Norway rat 1 1
No Yes NCBI 2017_08 genome   108 108
No Yes Uniprot 2018_03 genome   6491 6481
No Yes NCBI viral sequences (Viral)   86 86
No Yes PDB chains (SCOP 1.75) (PDB)   11 11
No Yes Protein Data Bank (all PDB sequenc)   861 861
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   878 878
No Yes UniProt viral sequences (Viral)   1799 1799

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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