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Phosphotyrosine-binding domain (PTB) family domain assignments


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View all assignments containing a Phosphotyrosine-binding domain (PTB) domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   37782 37782
No Yes Homo sapiens 76_38 Human 143 141
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 30 29
No Yes Gorilla gorilla 76_3.1 Western gorilla 46 43
No Yes Pongo abelii 76_2 Sumatran orangutan 29 29
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 34 34
No Yes Papio anubis 76 Olive baboon 40 38
No Yes Macaca mulatta 76_1 Rhesus monkey 57 56
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 64 61
No Yes Otolemur garnettii 76_3 Small-eared galago 33 31
No Yes Microcebus murinus 76_1 Gray mouse lemur 23 22
No Yes Rattus norvegicus 76_5.0 Norway rat 38 36
No Yes Mus musculus 76_38 House mouse 93 91
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 24 23
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 28 27
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 32 31
No Yes Cavia porcellus 76_3 Domestic guinea pig 31 30
No Yes Oryctolagus cuniculus 76_2 Rabbit 24 23
No Yes Ochotona princeps 76 American pika 26 25
No Yes Tupaia belangeri 76 Northern tree shrew 15 15
No Yes Sus scrofa 76_10.2 Pig 34 33
No Yes Bos taurus 76_3.1 Cattle 37 36
No Yes Ovis aries 76_3.1 Sheep 35 33
No Yes Vicugna pacos 76_1 Alpaca 9 9
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 24 24
No Yes Mustela putorius furo 76_1.0 Domestic ferret 30 29
No Yes Ailuropoda melanoleuca 76_1 Giant panda 36 35
No Yes Canis familiaris 76_3.1 Dog 44 42
No Yes Felis catus 76_6.2 Domestic cat 32 31
No Yes Equus caballus 76_2 Horse 30 29
No Yes Myotis lucifugus 76_2.0 Little brown bat 28 27
No Yes Pteropus vampyrus 76_1 Large flying fox 27 26
No Yes Sorex araneus 76_1 European shrew 15 14
No Yes Erinaceus europaeus 76 Western European hedgehog 21 21
No Yes Procavia capensis 76_1 Cape rock hyrax 22 22
No Yes Loxodonta africana 76_3 African savanna elephant 44 40
No Yes Echinops telfairi 76 Small Madagascar hedgehog 19 18
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 41 39
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 10 9
No Yes Macropus eugenii 76_1.0 Tammar wallaby 22 21
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 28 26
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 27 25
No Yes Ornithorhynchus anatinus 76_5 Platypus 18 18
No Yes Saccoglossus kowalevskii v3.0   24 24
No Yes Petromyzon marinus 76_7.0 Sea lamprey 15 15
No Yes Meleagris gallopavo 76_2 Turkey 30 29
No Yes Gallus gallus 76_4 Chicken 27 26
No Yes Anas platyrhynchos 76_1.0 Mallard 23 23
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 25 24
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 31 29
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 30 29
No Yes Anolis carolinensis 76_2.0 Green anole 28 27
No Yes Xenopus laevis African clawed frog 44 36
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 38 35
No Yes Latimeria chalumnae 76_1 Coelacanth 32 29
No Yes Lepisosteus oculatus 76 Spotted gar 41 39
No Yes Gadus morhua 76_1 Atlantic cod 41 37
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 47 41
No Yes Takifugu rubripes 76_4 Torafugu 138 126
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 37 35
No Yes Oryzias latipes 76_1 Japanese medaka 41 38
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 39 36
No Yes Poecilia formosa 76 Amazon molly 41 38
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 51 48
No Yes Astyanax mexicanus 76 Mexican tetra 41 37
No Yes Danio rerio 76_9 Zebrafish 71 66
No Yes Oikopleura dioica   4 4
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 76 Vase tunicate 5 5
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 6 6
No Yes Adineta vaga   16 16
No Yes Octopus bimaculoides 280   14 14
No Yes Crassostrea gigas 22 Pacific oyster 4 4
No Yes Lottia gigantea Owl limpet 4 4
No Yes Helobdella robusta   7 7
No Yes Capitella sp. I   6 6
No Yes Danaus plexippus OGS1.0 Monarch butterfly 6 6
No Yes Heliconius melpomene Postman butterfly 4 4
No Yes Bombyx mori Domestic silkworm 3 3
No Yes Nasonia vitripennis Jewel wasp 6 6
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 13 13
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 8 8
No Yes Linepithema humile v1.1 Argentine ant 8 8
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 7 7
No Yes Solenopsis invicta v.2.2.3 Red fire ant 7 7
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 8 8
No Yes Atta cephalotes v1.1   8 8
No Yes Camponotus floridanus v3.3 Florida carpenter ant 7 7
No Yes Lucilia cuprina Australian sheep blowfly 7 7
No Yes Drosophila grimshawi 1.3   7 7
No Yes Drosophila willistoni 1.3   7 7
No Yes Drosophila pseudoobscura 2.13   6 6
No Yes Drosophila persimilis 1.3   7 7
No Yes Drosophila suzukii   7 6
No Yes Drosophila yakuba 1.3   6 6
No Yes Drosophila simulans 1.3   5 5
No Yes Drosophila sechellia 1.3   6 6
No Yes Drosophila melanogaster 76_5 Fruit fly 21 21
No Yes Drosophila erecta 1.3   6 6
No Yes Drosophila ananassae 1.3   6 6
No Yes Drosophila virilis 1.2   7 7
No Yes Drosophila mojavensis 1.3   7 7
No Yes Megaselia scalaris 22   3 3
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 7 7
No Yes Culex pipiens quinquefasciatus Southern house mosquito 7 7
No Yes Anopheles darlingi 22 American malaria mosquito 3 3
No Yes Anopheles gambiae 49_3j African malaria mosquito 5 5
No Yes Tribolium castaneum 3.0 Red flour beetle 5 5
No Yes Pediculus humanus corporis (Early assembly) Human body louse 5 5
No Yes Acyrthosiphon pisum Pea aphid 4 4
No Yes Rhodnius prolixus 22   5 5
No Yes Daphnia pulex Common water flea 4 4
No Yes Strigamia maritima 22   8 8
No Yes Sarcoptes scabiei   5 5
No Yes Tetranychus urticae Two-spotted spider mite 6 6
No Yes Ixodes scapularis (Preliminary) Black-legged tick 4 4
No Yes Pristionchus pacificus   4 4
No Yes Meloidogyne incognita Southern root-knot nematode 4 4
No Yes Meloidogyne hapla   3 3
No Yes Onchocerca volvulus 22   4 4
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 4 4
No Yes Caenorhabditis japonica   4 4
No Yes Caenorhabditis brenneri   8 8
No Yes Caenorhabditis remanei   4 4
No Yes Caenorhabditis elegans 76_235 Roundworm 18 18
No Yes Caenorhabditis briggsae 2   5 5
No Yes Trichinella spiralis 22   3 3
No Yes Hymenolepis microstoma   2 2
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 2 2
No Yes Schistosoma mansoni   3 3
No Yes Mnemiopsis leidyi Sea walnut 2 2
No Yes Acropora digitifera v1.0   3 3
No Yes Nematostella vectensis 1.0 Starlet sea anemone 5 5
No Yes Hydra vulgaris   1 1
No Yes Amphimedon queenslandica   1 1
No Yes Trichoplax adhaerens   1 1
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 50 45
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 11 11
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 9 9
No Yes Ascaris suum Victoria/Ghent Pig roundworm 4 4
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 13 13
No Yes Homo sapiens 75_37 (old version GRC) Human 180 178
No Yes Homo sapiens (NCBI version) Human 54 52
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 32 30
No Yes Loa loa v3.3 (Request) Eye worm 3 3
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 4 4
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 2 2
No Yes Homo sapiens 69_37 Human 41 39
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 28 27
No Yes Gorilla gorilla 69_3.1 Western gorilla 33 31
No Yes Pongo abelii 69_2 Sumatran orangutan 26 26
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 27 27
No Yes Macaca mulatta 69_1 Rhesus monkey 33 32
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 29 28
No Yes Otolemur garnettii 69_3 Small-eared galago 33 31
No Yes Microcebus murinus 69_1 Gray mouse lemur 23 22
No Yes Rattus norvegicus 69_3.4 Norway rat 32 30
No Yes Mus musculus 69_38 House mouse 33 31
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 24 23
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 28 27
No Yes Cavia porcellus 69_3 Domestic guinea pig 31 30
No Yes Oryctolagus cuniculus 69_2 Rabbit 23 22
No Yes Ochotona princeps 69 American pika 26 25
No Yes Tupaia belangeri 69 Northern tree shrew 15 15
No Yes Sus scrofa 69_10.2 Pig 31 30
No Yes Bos taurus 69_3.1 Cattle 32 31
No Yes Vicugna pacos 69_1 Alpaca 9 9
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 24 24
No Yes Mustela putorius furo 69_1.0 Domestic ferret 30 29
No Yes Ailuropoda melanoleuca 69_1 Giant panda 31 30
No Yes Canis familiaris 69_3.1 Dog 34 32
No Yes Felis catus 69 Domestic cat 18 18
No Yes Equus caballus 69_2 Horse 27 26
No Yes Myotis lucifugus 69_2.0 Little brown bat 28 27
No Yes Pteropus vampyrus 69_1 Large flying fox 27 26
No Yes Sorex araneus 69_1 European shrew 15 14
No Yes Erinaceus europaeus 69 Western European hedgehog 21 21
No Yes Procavia capensis 69_1 Cape rock hyrax 22 22
No Yes Loxodonta africana 69_3 African savanna elephant 31 29
No Yes Echinops telfairi 69 Small Madagascar hedgehog 19 18
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 20 18
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 10 9
No Yes Macropus eugenii 69_1.0 Tammar wallaby 22 21
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 27 25
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 26 24
No Yes Ornithorhynchus anatinus 69_5 Platypus 15 15
No Yes Petromyzon marinus 69_7.0 Sea lamprey 15 15
No Yes Meleagris gallopavo 69_2 Turkey 24 23
No Yes Gallus gallus 69_2 Chicken 22 22
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 25 24
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 24 23
No Yes Anolis carolinensis 69_2.0 Green anole 28 27
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 31 28
No Yes Latimeria chalumnae 69_1 Coelacanth 27 24
No Yes Gadus morhua 69_1 Atlantic cod 35 31
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 34 30
No Yes Takifugu rubripes 69_4 Torafugu 38 35
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 34 32
No Yes Oryzias latipes 69_1 Japanese medaka 36 33
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 39 36
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 38 36
No Yes Danio rerio 69_9 Zebrafish 40 36
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 4 4
No Yes Ciona intestinalis 69 Vase tunicate 4 4
No Yes Drosophila melanogaster 69_5 Fruit fly 6 6
No Yes Caenorhabditis elegans 69_215 Roundworm 5 5
No Yes NCBI 2017_08 genome   21219 20672
No Yes STRING v9.0.5 (STRING)   857 817
No Yes Uniprot 2018_03 genome   8523 8254
No Yes PDB chains (SCOP 1.75) (PDB)   19 18
No Yes Protein Data Bank (all PDB sequenc)   63 61
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   193 193
No Yes TargetDB (Targets)   51 47

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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