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Calpain large subunit, catalytic domain (domain II) family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   19162 19162
No Yes Homo sapiens 76_38 Human 51 51
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 11 11
No Yes Gorilla gorilla 76_3.1 Western gorilla 23 23
No Yes Pongo abelii 76_2 Sumatran orangutan 12 12
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 13 13
No Yes Papio anubis 76 Olive baboon 14 14
No Yes Macaca mulatta 76_1 Rhesus monkey 22 22
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 35 34
No Yes Otolemur garnettii 76_3 Small-eared galago 13 13
No Yes Microcebus murinus 76_1 Gray mouse lemur 14 11
No Yes Rattus norvegicus 76_5.0 Norway rat 14 14
No Yes Mus musculus 76_38 House mouse 22 22
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 11 11
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 17 17
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 10 10
No Yes Cavia porcellus 76_3 Domestic guinea pig 14 14
No Yes Oryctolagus cuniculus 76_2 Rabbit 13 13
No Yes Ochotona princeps 76 American pika 11 11
No Yes Tupaia belangeri 76 Northern tree shrew 8 7
No Yes Sus scrofa 76_10.2 Pig 17 17
No Yes Bos taurus 76_3.1 Cattle 16 16
No Yes Ovis aries 76_3.1 Sheep 11 11
No Yes Vicugna pacos 76_1 Alpaca 5 5
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 12 12
No Yes Mustela putorius furo 76_1.0 Domestic ferret 13 13
No Yes Ailuropoda melanoleuca 76_1 Giant panda 13 13
No Yes Canis familiaris 76_3.1 Dog 19 19
No Yes Felis catus 76_6.2 Domestic cat 13 13
No Yes Equus caballus 76_2 Horse 17 17
No Yes Myotis lucifugus 76_2.0 Little brown bat 13 13
No Yes Pteropus vampyrus 76_1 Large flying fox 13 12
No Yes Sorex araneus 76_1 European shrew 5 4
No Yes Erinaceus europaeus 76 Western European hedgehog 8 8
No Yes Procavia capensis 76_1 Cape rock hyrax 11 10
No Yes Loxodonta africana 76_3 African savanna elephant 18 18
No Yes Echinops telfairi 76 Small Madagascar hedgehog 10 9
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 17 17
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 7 5
No Yes Macropus eugenii 76_1.0 Tammar wallaby 10 10
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 21 21
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 13 13
No Yes Ornithorhynchus anatinus 76_5 Platypus 12 12
No Yes Saccoglossus kowalevskii v3.0   10 10
No Yes Petromyzon marinus 76_7.0 Sea lamprey 11 11
No Yes Meleagris gallopavo 76_2 Turkey 15 15
No Yes Gallus gallus 76_4 Chicken 10 10
No Yes Anas platyrhynchos 76_1.0 Mallard 12 12
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 14 13
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 13 12
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 14 14
No Yes Anolis carolinensis 76_2.0 Green anole 13 13
No Yes Xenopus laevis African clawed frog 30 30
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 20 20
No Yes Latimeria chalumnae 76_1 Coelacanth 11 11
No Yes Lepisosteus oculatus 76 Spotted gar 20 20
No Yes Gadus morhua 76_1 Atlantic cod 18 17
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 26 26
No Yes Takifugu rubripes 76_4 Torafugu 97 97
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 32 32
No Yes Oryzias latipes 76_1 Japanese medaka 19 19
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 20 20
No Yes Poecilia formosa 76 Amazon molly 21 21
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 31 31
No Yes Astyanax mexicanus 76 Mexican tetra 18 18
No Yes Danio rerio 76_9 Zebrafish 41 41
No Yes Oikopleura dioica   4 4
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 14 14
No Yes Ciona intestinalis 76 Vase tunicate 5 5
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 4 4
No Yes Adineta vaga   15 15
No Yes Octopus bimaculoides 280   10 10
No Yes Crassostrea gigas 22 Pacific oyster 16 16
No Yes Lottia gigantea Owl limpet 12 12
No Yes Helobdella robusta   11 11
No Yes Capitella sp. I   17 17
No Yes Danaus plexippus OGS1.0 Monarch butterfly 3 3
No Yes Heliconius melpomene Postman butterfly 2 2
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Nasonia vitripennis Jewel wasp 3 3
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 13 13
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 3 3
No Yes Linepithema humile v1.1 Argentine ant 3 3
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 2
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 3 3
No Yes Atta cephalotes v1.1   3 3
No Yes Camponotus floridanus v3.3 Florida carpenter ant 3 3
No Yes Lucilia cuprina Australian sheep blowfly 3 3
No Yes Drosophila grimshawi 1.3   4 4
No Yes Drosophila willistoni 1.3   4 4
No Yes Drosophila pseudoobscura 2.13   3 3
No Yes Drosophila persimilis 1.3   3 3
No Yes Drosophila suzukii   4 4
No Yes Drosophila yakuba 1.3   4 4
No Yes Drosophila simulans 1.3   4 4
No Yes Drosophila sechellia 1.3   4 4
No Yes Drosophila melanogaster 76_5 Fruit fly 10 10
No Yes Drosophila erecta 1.3   4 4
No Yes Drosophila ananassae 1.3   4 4
No Yes Drosophila virilis 1.2   4 4
No Yes Drosophila mojavensis 1.3   4 4
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 8 8
No Yes Culex pipiens quinquefasciatus Southern house mosquito 6 6
No Yes Anopheles darlingi 22 American malaria mosquito 6 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 7 7
No Yes Tribolium castaneum 3.0 Red flour beetle 5 5
No Yes Pediculus humanus corporis (Early assembly) Human body louse 6 6
No Yes Acyrthosiphon pisum Pea aphid 4 4
No Yes Rhodnius prolixus 22   8 8
No Yes Daphnia pulex Common water flea 5 5
No Yes Strigamia maritima 22   7 7
No Yes Sarcoptes scabiei   2 2
No Yes Tetranychus urticae Two-spotted spider mite 5 5
No Yes Ixodes scapularis (Preliminary) Black-legged tick 4 4
No Yes Pristionchus pacificus   2 2
No Yes Meloidogyne incognita Southern root-knot nematode 8 8
No Yes Meloidogyne hapla   4 4
No Yes Onchocerca volvulus 22   4 4
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 9 9
No Yes Caenorhabditis japonica   6 6
No Yes Caenorhabditis brenneri   8 8
No Yes Caenorhabditis remanei   9 9
No Yes Caenorhabditis elegans 76_235 Roundworm 15 15
No Yes Caenorhabditis briggsae 2   5 5
No Yes Trichinella spiralis 22   3 3
No Yes Hymenolepis microstoma   5 5
No Yes Echinococcus multilocularis   5 5
No Yes Echinococcus granulosus   5 5
No Yes Taenia solium Pork tapeworm 5 5
No Yes Schistosoma mansoni   7 6
No Yes Mnemiopsis leidyi Sea walnut 3 3
No Yes Acropora digitifera v1.0   1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 6 6
No Yes Hydra vulgaris   5 5
No Yes Amphimedon queenslandica   2 2
No Yes Trichoplax adhaerens   4 4
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Sphaerobolus stellatus v1.0   3 3
No Yes Piloderma croceum F 1598 v1.0   2 2
No Yes Coprinopsis cinerea okayama7 130 v3   6 6
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Galerina marginata v1.0   5 5
No Yes Hebeloma cylindrosporum h7 v2.0   4 4
No Yes Laccaria bicolor S238N-H82   3 3
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   5 5
No Yes Heterobasidion annosum   1 1
No Yes Gloeophyllum trabeumv1.0   3 3
No Yes Punctularia strigosozonata v1.0   3 3
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   5 5
No Yes Daldinia eschscholzii EC12 v1.0   2 2
No Yes Apiospora montagnei NRRL 25634 v1.0   3 3
No Yes Magnaporthe poae ATCC 64411 22   3 3
No Yes Magnaporthe grisea 70-15   2 2
No Yes Podospora anserina   4 4
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Thielavia terrestris NRRL 8126   2 2
No Yes Chaetomium globosum CBS 148.51   1 1
No Yes Neurospora tetrasperma   3 3
No Yes Neurospora discreta FGSC 8579   3 3
No Yes Neurospora crassa OR74A   3 3
No Yes Cryphonectria parasitica Chestnut blight fungus 3 3
No Yes Verticillium albo-atrum VaMs.102   3 3
No Yes Verticillium dahliae VdLs.17   3 3
No Yes Acremonium alcalophilumv 1.0   1 1
No Yes Glomerella graminicola 22   3 3
No Yes Fusarium graminearum   3 3
No Yes Nectria haematococca mpVI   3 3
No Yes Fusarium oxysporum f. sp. lycopersici 4286   7 6
No Yes Fusarium verticillioides 7600   2 2
No Yes Trichoderma asperellum CBS 433.97 v1.0   2 2
No Yes Trichoderma atroviride   2 2
No Yes Trichoderma citrinoviride v1.0   2 2
No Yes Trichoderma reesei 1.2   2 2
No Yes Trichoderma virens Gv29-8   3 3
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 2
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 2
No Yes Amorphotheca resinae v1.0 Creosote fungus 3 3
No Yes Botrytis cinerea B05.10   2 2
No Yes Sclerotinia sclerotiorum   3 3
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Leptosphaeria maculans 22   2 2
No Yes Setosphaeria turcica v1.0   2 2
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   2 2
No Yes Cochliobolus victoriae FI3 v1.0   2 2
No Yes Cochliobolus carbonum 26-R-13 v1.0   2 2
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 2 2
No Yes Alternaria brassicicola   1 1
No Yes Cochliobolus lunatus m118 v2.0   2 2
No Yes Pyrenophora teres f. teres 22   2 2
No Yes Pyrenophora tritici-repentis   2 2
No Yes Stagonospora nodorum   1 1
No Yes Mycosphaerella graminicola IPO323   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   1 1
No Yes Aspergillus zonatus v1.0   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus fumigatus Af293   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus nidulans FGSC A4   1 1
No Yes Aspergillus sydowii v1.0   1 1
No Yes Aspergillus versicolor v1.0   1 1
No Yes Aspergillus glaucus   1 1
No Yes Aspergillus carbonarius ITEM 5010   1 1
No Yes Neosartorya fischeri NRRL 181   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Aspergillus clavatus NRRL 1   1 1
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Entamoeba dispar 1.2   1 1
No Yes Entamoeba invadens 1.2   1 1
No Yes Entamoeba histolytica 1   1 1
No Yes Selaginella moellendorffii   2 2
No Yes Pinus taeda Loblolly pine 1 1
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 2 2
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   3 3
No Yes Citrus clementina v165   1 1
No Yes Citrus sinensis v154 Sweet orange 3 3
No Yes Thellungiella halophila v173   1 1
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 1 1
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 1 1
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes Carica papaya Papaya 1 1
No Yes Medicago truncatula Barrel medic 1 1
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Glycine max v109 Soybean 4 4
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Fragaria vesca Wild strawberry 3 3
No Yes Malus domestica v196 Apple 2 2
No Yes Prunus persica v139 Peach 3 3
No Yes Linum usitatissimum v200 Flax 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 2 2
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 1 1
No Yes Actinidia chinensis Hongyang   1 1
No Yes Aquilegia coerulea v195   7 7
No Yes Triticum aestivum 22 Bread wheat 3 3
No Yes Aegilops tauschii 22   1 1
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Oryza barthii 22 African wild rice 4 2
No Yes Oryza glumaepatula 22   2 2
No Yes Oryza punctata 22   2 2
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 1 1
No Yes Oryza sativa v193 Rice 1 1
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 2 2
No Yes Panicum virgatum v202 Switchgrass 2 2
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 2 2
No Yes Zea mays v181 Maize 1 1
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 1 1
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   2 2
No Yes Chlamydomonas reinhardtii 4.0   3 3
No Yes Ostreococcus sp. RCC809   2 2
No Yes Ostreococcus lucimarinus CCE9901   3 3
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   1 1
No Yes Micromonas sp. RCC299   2 2
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Thecamonas trahens ATCC 50062   11 11
No Yes Bigelowiella natans CCMP2755 22   7 7
No Yes Cyanophora paradoxa   2 2
No Yes Leishmania mexicana 2.4   4 4
No Yes Leishmania major strain Friedlin   7 7
No Yes Leishmania infantum JPCM5 2.4   6 6
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   5 5
No Yes Trypanosoma vivax   6 6
No Yes Trypanosoma cruzi strain CL Brener   3 3
No Yes Trypanosoma congolense 2.4   2 2
No Yes Trypanosoma brucei gambiense v4.1   3 3
No Yes Trypanosoma brucei TREU927 v4.1   3 3
No Yes Ectocarpus siliculosus   4 4
No Yes Aureococcus anophagefferens   1 1
No Yes Albugo laibachii 22   5 5
No Yes Pythium iwayamai DAOM BR242034 22   3 3
No Yes Pythium arrhenomanes ATCC 12531 22   6 6
No Yes Pythium ultimum v1.7-2   3 3
No Yes Pythium aphanidermatum DAOM BR444 22   5 5
No Yes Pythium irregulare DAOM BR486 22   6 6
No Yes Pythium vexans DAOM BR484 22   5 5
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 3 3
No Yes Phytophthora sojae 1.1   3 3
No Yes Phytophthora infestans T30-4   4 4
No Yes Phytophthora capsici   2 2
No Yes Hyaloperonospora arabidopsidis 22   1 1
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Perkinsus marinus ATCC 50983   3 3
No Yes Paramecium tetraurelia   17 17
No Yes Tetrahymena thermophila SB210 1   18 18
No Yes Ichthyophthirius multifiliis strain G5   11 11
No Yes Symbiodinium minutum clade B1 v1.2   13 13
No Yes Naegleria gruberi   12 12
No Yes Trichomonas vaginalis   3 3
No Yes Guillardia theta CCMP2712 v1.0   7 6
No Yes Emiliania huxleyi CCMP1516   15 14
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 29 29
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 9 9
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 8 8
No Yes Ascaris suum Victoria/Ghent Pig roundworm 5 5
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 11 11
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H143   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 3 3
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Trypanosoma brucei Lister 427 v4.1   3 3
No Yes Homo sapiens 75_37 (old version GRC) Human 57 57
No Yes Homo sapiens (NCBI version) Human 20 20
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 12 12
No Yes Loa loa v3.3 (Request) Eye worm 5 5
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 4 4
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 4 4
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Malus x domestica (Duplicate) Apple 2 2
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   2 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 17 17
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 11 11
No Yes Gorilla gorilla 69_3.1 Western gorilla 15 15
No Yes Pongo abelii 69_2 Sumatran orangutan 12 12
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 12 12
No Yes Macaca mulatta 69_1 Rhesus monkey 12 12
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 13 13
No Yes Otolemur garnettii 69_3 Small-eared galago 13 13
No Yes Microcebus murinus 69_1 Gray mouse lemur 14 11
No Yes Rattus norvegicus 69_3.4 Norway rat 11 11
No Yes Mus musculus 69_38 House mouse 12 12
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 11 11
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 14 14
No Yes Cavia porcellus 69_3 Domestic guinea pig 13 13
No Yes Oryctolagus cuniculus 69_2 Rabbit 13 13
No Yes Ochotona princeps 69 American pika 11 11
No Yes Tupaia belangeri 69 Northern tree shrew 8 7
No Yes Sus scrofa 69_10.2 Pig 12 12
No Yes Bos taurus 69_3.1 Cattle 12 12
No Yes Vicugna pacos 69_1 Alpaca 5 5
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 12 12
No Yes Mustela putorius furo 69_1.0 Domestic ferret 13 13
No Yes Ailuropoda melanoleuca 69_1 Giant panda 13 13
No Yes Canis familiaris 69_3.1 Dog 14 14
No Yes Felis catus 69 Domestic cat 12 11
No Yes Equus caballus 69_2 Horse 12 12
No Yes Myotis lucifugus 69_2.0 Little brown bat 12 12
No Yes Pteropus vampyrus 69_1 Large flying fox 13 12
No Yes Sorex araneus 69_1 European shrew 5 4
No Yes Erinaceus europaeus 69 Western European hedgehog 8 8
No Yes Procavia capensis 69_1 Cape rock hyrax 11 10
No Yes Loxodonta africana 69_3 African savanna elephant 14 14
No Yes Echinops telfairi 69 Small Madagascar hedgehog 10 9
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 10 8
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 7 5
No Yes Macropus eugenii 69_1.0 Tammar wallaby 10 10
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 14 14
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 12 12
No Yes Ornithorhynchus anatinus 69_5 Platypus 11 11
No Yes Petromyzon marinus 69_7.0 Sea lamprey 9 9
No Yes Meleagris gallopavo 69_2 Turkey 12 12
No Yes Gallus gallus 69_2 Chicken 11 11
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 14 13
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 11 11
No Yes Anolis carolinensis 69_2.0 Green anole 13 13
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 17 17
No Yes Latimeria chalumnae 69_1 Coelacanth 10 10
No Yes Gadus morhua 69_1 Atlantic cod 18 17
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 19 19
No Yes Takifugu rubripes 69_4 Torafugu 19 19
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 18 18
No Yes Oryzias latipes 69_1 Japanese medaka 19 19
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 20 20
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 22 22
No Yes Danio rerio 69_9 Zebrafish 24 24
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 3 3
No Yes Ciona intestinalis 69 Vase tunicate 4 4
No Yes Drosophila melanogaster 69_5 Fruit fly 4 4
No Yes Caenorhabditis elegans 69_215 Roundworm 8 8
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes NCBI 2017_08 genome   7646 7629
No Yes Protozoadb 2010_08 (Protozoadb)   41 41
No Yes STRING v9.0.5 (STRING)   564 560
No Yes Uniprot 2018_03 genome   6042 6004
No Yes Global Ocean Sampling Expedition (GOS)   8 8
No Yes PDB chains (SCOP 1.75) (PDB)   10 10
No Yes Protein Data Bank (all PDB sequenc)   44 44
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   82 82
No Yes TargetDB (Targets)   19 19

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.