|
|
Fly Anatomy (FA): multi-tissue structure 
(show info)
Biomedical Ontology
Like Gene Ontology (GO), biomedical ontology such as phenotype ontology classifies and organizes gene-mutant/null phenotypic information from the very general at the top to more specific terms in the directed acyclic graph (DAG) by viewing an individual term as a node and its relations to parental terms (allowing for multiple parents) as directed edges. To navigate this hierarchy, we display all parental phenotypic terms to the current phenotypic term of interest ordered by their shortest distances to the current term. Also, only direct children phenotypic terms of the current phenotypic term are listed. Biomedical ontologies we have incorporated are as follows:
- Disease Ontology (DO) Ontology DO semantically integrates disease and medical vocabularies through extensive cross mapping of DO terms to MeSH, ICD, NCI’s thesaurus, SNOMED and OMIM.
- Human Phenotype (HP) Ontology HP captures phenotypic abnormalities that are described in OMIM, along with the corresponding disease-causing genes. It includes three complementary biological concepts: Mode_of_Inheritance (MI), ONset_and_clinical_course (ON), and Phenotypic_Abnormality (PA).
- Mouse Phenotype (MP) Ontology MP describes phenotypes of the mouse after a specific gene is genetically disrupted. Using it, Mouse Genome Informatics (MGI) provides high-coverate gene-level phenotypes for the mouse.
- Worm Phenotype (WP) Ontology WP classifies and organizes phenotype descriptions for C. elegans and other nematodes. Using it, WormBase provides primary resource for phenotype annotations for C. elegans.
- Yeast Phenotype (YP) Ontology Based on YP which is the major contributor to the ‘Ascomycete phenotype ontology’, Saccharomyces Genome Database (SGD) provides single mutant phenotypes for every gene in the yeast genome.
- Fly Phenotype (FP) Ontology FP refers to FlyBase controlled vocabulary. Specifically, a structured controlled vocabulary is used for the annotation of alleles (for their mutagen etc) in FlyBase.
- Fly Anatomy (FA) Ontology FA is a structured controlled vocabulary of the anatomy of Drosophila melanogaster, used for the description of phenotypes and where a gene is expressed.
- Zebrafish Anatomy (ZA) Ontology ZA displays anatomical terms of the zebrafish using standard anatomical nomenclature, together with affected genes.
- Xenopus Anatomy (XA) Ontology XA represents the lineage of tissues and the timing of development for frogs (Xenopus laevis and Xenopus tropicalis). It is used to annotate Xenopus gene expression patterns and mutant and morphant phenotypes.
- Arabidopsis Plant Ontology (AP) Ontology As a major contributor to Plant Ontology which describes plant anatomical and morphological structures (AN) and growth and developmental stages (DE), the Arabidopsis Information Resource (TAIR) provides arabidopsis plant ontology annotations for the model higher plant Arabidopsis thaliana.
- Enzyme Commission (EC) Ontology Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed.
- UniProtKB KeyWords (KW) Ontology Keywords in UniProtKB are controlled vocabulary, providing a summary of the entry content and are used to index UniProtKB/Swiss-Prot entries based on 10 categories (the category "Technical term" being excluded here). Each keyword is attributed manually to UniProtKB/Swiss-Prot entries and automatically to UniProtKB/TrEMBL entries (according to specific annotation rules).
- CTD Diseases (CD) Ontology CD is MEDIC disease vocabulary that is modified by CTD from the "Diseases" [C] branch of Medical Subject Headings (MeSH), combined with genetic disorders from the Online Mendelian Inheritance in OMIM database.
- CTD Chemicals (CC) Ontology CC is chemical vocabulary that is adapted by CTD from the "Chemicals and Drugs" category and Supplementary Concept Records of Medical Subject Headings (MeSH, a hierarchical vocabulary used to index articles for MEDLINE/PubMed).
Jump to [ Top · Hierarchy · Annotations ]
Root: FA Hierarchy (fly anatomy from FlyBase anatomy ontology)
Jump to [ Top · Hierarchy ]
Family( show details)
Highlighted in gray are those with FDR_all>0.001
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Myb/SANT domain | 0 | DIRECT |
| RNase III catalytic domain-like | 0 | DIRECT |
| ets domain | 0 | DIRECT |
| BC ATP-binding domain-like | 0 | DIRECT |
| p120GAP domain-like | 0 | DIRECT |
| Rel/Dorsal transcription factors, DNA-binding domain | 0 | DIRECT |
| Tubulin, C-terminal domain | 0 | DIRECT |
| MBT repeat | 0 | DIRECT |
| DNA replication initiator (cdc21/cdc54) N-terminal domain | 0 | DIRECT |
| SCF ubiquitin ligase complex WHB domain | 0 | DIRECT |
| Dachshund-homology domain | 0 | DIRECT |
| RecA protein-like (ATPase-domain) | 0 | DIRECT |
| Phoshoinositide 3-kinase (PI3K), catalytic domain | 0 | DIRECT |
| Frizzled cysteine-rich domain | 0 | DIRECT |
| SMAD MH1 domain | 0 | DIRECT |
| Cullin homology domain | 0 | DIRECT |
| YWTD domain | 0 | DIRECT |
| Class I glutamine amidotransferases (GAT) | 0 | DIRECT |
| Ubiquitin activating enzymes (UBA) | 0 | DIRECT |
| Extracellular domain of cell surface receptors | 0 | DIRECT |
| BC N-terminal domain-like | 0 | DIRECT |
| Sema domain | 0 | DIRECT |
| Laminin-type module | 0 | DIRECT |
| POU-specific domain | 0 | DIRECT |
| Smc hinge domain | 0 | DIRECT |
| SAP domain | 0 | DIRECT |
| Integrin domains | 0 | DIRECT |
| Hypoxia-inducible factor Hif2a, C-terminal domain | 0 | DIRECT |
| Cell cycle control phosphatase, catalytic domain | 0 | DIRECT |
| Cullin repeat | 0 | DIRECT |
| cAMP-binding domain | 0 | DIRECT |
| Phoshoinositide 3-kinase (PI3K) helical domain | 0 | DIRECT |
| TATA-box binding protein (TBP), C-terminal domain | 0 | DIRECT |
| Homeodomain | 0.001713 | INHERITED FROM: longitudinal vein || embryonic/larval subesophageal ganglion || central brain || embryonic supraesophageal neuromere || embryonic/larval supraesophageal ganglion || wing hinge || embryonic protocerebrum || tritocerebrum || alula || EL neuron || cell body rind of the central nervous system || subesophageal ganglion || embryonic brain || ganglion || antennal lobe glomerulus VA1v |
| Protein kinases, catalytic subunit | 0.01162 | INHERITED FROM: imaginal disc || intestinal stem cell |
| SH2 domain | 0.01291 | INHERITED FROM: egg chamber || female germline cyst || cyst progenitor cell |
| Tubulin, GTPase domain | 0.03524 | INHERITED FROM: spermatid || spermatid cyst |
| Fibronectin type III | 0.04397 | INHERITED FROM: LNv neuron || lobe system of adult mushroom body || LN period neuron || s-LNv neuron |
| Group II chaperonin (CCT, TRIC), ATPase domain | 0.06016 | INHERITED FROM: adult heart || adult dorsal vessel |
| Paired domain | 0.08582 | INHERITED FROM: EG neuron || RP2 motor neuron || EL neuron |
| Toll/Interleukin receptor TIR domain | 0.0907 | INHERITED FROM: ventral nerve cord |
| Plexin repeat | 0.0907 | INHERITED FROM: ventral nerve cord || salivary gland || embryonic/larval salivary gland |
| I set domains | 0.1083 | INHERITED FROM: adult cerebral ganglion || LNv neuron || interface glial cell || lobe system of adult mushroom body || antennal lobe glomerulus || s-LNv neuron || adult brain |
| HLH, helix-loop-helix DNA-binding domain | 0.1271 | INHERITED FROM: EL neuron || 5-6I of thorax |
| Forkhead DNA-binding domain | 0.1317 | INHERITED FROM: RP2sib neuron |
| SMAD domain | 0.1345 | INHERITED FROM: alimentary canal || germarium || wing blade || dorsal thoracic disc || gut || wing vein || wing disc || female germline stem cell || gut section || germarium region 1 |
| Rhomboid-like | 0.1345 | INHERITED FROM: wing blade || wing vein |
| Group II chaperonin (CCT, TRIC), apical domain | 0.1656 | INHERITED FROM: adult heart || adult dorsal vessel |
| Histone lysine methyltransferases | 0.1656 | INHERITED FROM: dorsal thoracic disc |
| Group II chaperonin (CCT, TRIC), intermediate domain | 0.2018 | INHERITED FROM: adult heart || adult dorsal vessel |
| Nuclear receptor | 0.2124 | INHERITED FROM: mushroom body gamma-lobe || supraesophageal ganglion neuron || larval abdominal neuromere |
| Nuclear receptor ligand-binding domain | 0.2208 | INHERITED FROM: central brain || mushroom body gamma-lobe || supraesophageal ganglion neuron || protocerebrum |
| EGF-type module | 0.2612 | INHERITED FROM: proventriculus || adult midgut progenitor cell || adult heart || wing blade || embryonic/larval midgut cell || germinal proliferation center hub || hindgut || adult dorsal vessel || primary lobe of embryonic/larval lymph gland || cortical zone of lymph gland primary lobe || hub cell |
| BTB/POZ domain | 0.2983 | INHERITED FROM: terminal filament |
| Spectrin repeat | 0.3 | INHERITED FROM: embryonic/larval gut || middle midgut || midgut epithelium || gut epithelium || gut epithelial section || oocyte || embryonic/larval alimentary canal || longitudinal connective || enterocyte || copper cell |
| PLC-like (P variant) | 0.3854 | INHERITED FROM: ommatidial precursor cluster || eye disc posterior to the morphogenetic furrow |
| Cyclin | 0.418 | INHERITED FROM: germarium |
| Growth factor receptor domain | 0.4456 | INHERITED FROM: proventriculus || salivary gland || hindgut || embryonic/larval lymph gland || primary lobe of embryonic/larval lymph gland || germinal proliferation center |
| Hairy Orange domain | 0.5451 | INHERITED FROM: EG neuron || EL neuron |
| Cytochrome P450 | 0.588 | INHERITED FROM: midline glial cell || hindgut || midgut || embryonic/larval foregut || larval VNC neuropil glial cell || embryonic/larval hindgut |
| Leucine zipper domain | 0.5896 | INHERITED FROM: adult heart |
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Myb/SANT domain | 0 | Direct |
| RNase III catalytic domain-like | 0 | Direct |
| ets domain | 0 | Direct |
| BC ATP-binding domain-like | 0 | Direct |
| p120GAP domain-like | 0 | Direct |
| Rel/Dorsal transcription factors, DNA-binding domain | 0 | Direct |
| Tubulin, C-terminal domain | 0 | Direct |
| MBT repeat | 0 | Direct |
| DNA replication initiator (cdc21/cdc54) N-terminal domain | 0 | Direct |
| SCF ubiquitin ligase complex WHB domain | 0 | Direct |
| Dachshund-homology domain | 0 | Direct |
| RecA protein-like (ATPase-domain) | 0 | Direct |
| Phoshoinositide 3-kinase (PI3K), catalytic domain | 0 | Direct |
| Frizzled cysteine-rich domain | 0 | Direct |
| SMAD MH1 domain | 0 | Direct |
| Cullin homology domain | 0 | Direct |
| YWTD domain | 0 | Direct |
| Class I glutamine amidotransferases (GAT) | 0 | Direct |
| Ubiquitin activating enzymes (UBA) | 0 | Direct |
| Extracellular domain of cell surface receptors | 0 | Direct |
| BC N-terminal domain-like | 0 | Direct |
| Sema domain | 0 | Direct |
| Laminin-type module | 0 | Direct |
| POU-specific domain | 0 | Direct |
| Smc hinge domain | 0 | Direct |
| SAP domain | 0 | Direct |
| Integrin domains | 0 | Direct |
| Hypoxia-inducible factor Hif2a, C-terminal domain | 0 | Direct |
| Cell cycle control phosphatase, catalytic domain | 0 | Direct |
| Cullin repeat | 0 | Direct |
| cAMP-binding domain | 0 | Direct |
| Phoshoinositide 3-kinase (PI3K) helical domain | 0 | Direct |
| TATA-box binding protein (TBP), C-terminal domain | 0 | Direct |
| Homeodomain | 0.001713 | Inherited |
| Protein kinases, catalytic subunit | 0.01162 | Inherited |
| SH2 domain | 0.01291 | Inherited |
| Tubulin, GTPase domain | 0.03524 | Inherited |
| Fibronectin type III | 0.04397 | Inherited |
| Group II chaperonin (CCT, TRIC), ATPase domain | 0.06016 | Inherited |
| Paired domain | 0.08582 | Inherited |
| Toll/Interleukin receptor TIR domain | 0.0907 | Inherited |
| Plexin repeat | 0.0907 | Inherited |
| I set domains | 0.1083 | Inherited |
| HLH, helix-loop-helix DNA-binding domain | 0.1271 | Inherited |
| Forkhead DNA-binding domain | 0.1317 | Inherited |
| SMAD domain | 0.1345 | Inherited |
| Rhomboid-like | 0.1345 | Inherited |
| Group II chaperonin (CCT, TRIC), apical domain | 0.1656 | Inherited |
| Histone lysine methyltransferases | 0.1656 | Inherited |
| Group II chaperonin (CCT, TRIC), intermediate domain | 0.2018 | Inherited |
| Nuclear receptor | 0.2124 | Inherited |
| Nuclear receptor ligand-binding domain | 0.2208 | Inherited |
| EGF-type module | 0.2612 | Inherited |
| BTB/POZ domain | 0.2983 | Inherited |
| Spectrin repeat | 0.3 | Inherited |
| PLC-like (P variant) | 0.3854 | Inherited |
| Cyclin | 0.418 | Inherited |
| Growth factor receptor domain | 0.4456 | Inherited |
| Hairy Orange domain | 0.5451 | Inherited |
| Cytochrome P450 | 0.588 | Inherited |
| Leucine zipper domain | 0.5896 | Inherited |
LINKTO: Domain2BO Download and Domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Single)( show details)
Highlighted in gray are those with FDR>0.001
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Duplex) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
54768,54768
54768 - dsRNA-binding domain-like
54768 - dsRNA-binding domain-like | 0 | DIRECT |
75632,46785
75632 - Cullin homology domain
46785 - "Winged helix" DNA-binding domain | 0 | DIRECT |
49562,48371
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
48371 - ARM repeat | 0 | DIRECT |
55550,50044
55550 - SH2 domain
50044 - SH3-domain | 0 | DIRECT |
49417,81296
49417 - p53-like transcription factors
81296 - E set domains | 0 | DIRECT |
55945,55945
55945 - TATA-box binding protein-like
55945 - TATA-box binding protein-like | 0 | DIRECT |
54534,48452
54534 - FKBP-like
48452 - TPR-like | 0 | DIRECT |
48371,56112
48371 - ARM repeat
56112 - Protein kinase-like (PK-like) | 0 | DIRECT |
51206,51206
51206 - cAMP-binding domain-like
51206 - cAMP-binding domain-like | 0 | DIRECT |
52490,55307
52490 - Tubulin nucleotide-binding domain-like
55307 - Tubulin C-terminal domain-like | 0 | DIRECT |
47220,47220
47220 - alpha-catenin/vinculin-like
47220 - alpha-catenin/vinculin-like | 0 | DIRECT |
50044,55550
50044 - SH3-domain
55550 - SH2 domain | 0 | DIRECT |
55550,56112
55550 - SH2 domain
56112 - Protein kinase-like (PK-like) | 0 | DIRECT |
101912,103575
101912 - Sema domain
103575 - Plexin repeat | 0 | DIRECT |
47459,55785
47459 - HLH, helix-loop-helix DNA-binding domain
55785 - PYP-like sensor domain (PAS domain) | 0 | DIRECT |
57184,57184
57184 - Growth factor receptor domain
57184 - Growth factor receptor domain | 0 | DIRECT |
63748,63748
63748 - Tudor/PWWP/MBT
63748 - Tudor/PWWP/MBT | 0 | DIRECT |
74788,75632
74788 - Cullin repeat-like
75632 - Cullin homology domain | 0 | DIRECT |
47413,46689
47413 - lambda repressor-like DNA-binding domains
46689 - Homeodomain-like | 0 | DIRECT |
51045,51045
51045 - WW domain
51045 - WW domain | 0 | DIRECT |
48726,48726
48726 - Immunoglobulin
48726 - Immunoglobulin | 0.06424 | INHERITED FROM: LNv neuron || ganglion || adult cerebral ganglion || adult brain || s-LNv neuron || LN period neuron || lobe system of adult mushroom body || antennal lobe glomerulus |
57196,57184
57196 - EGF/Laminin
57184 - Growth factor receptor domain | 0.07524 | INHERITED FROM: adult dorsal vessel || germinal proliferation center hub || embryonic/larval lymph gland || primary lobe of embryonic/larval lymph gland || wing vein || cortical zone of lymph gland primary lobe || germinal proliferation center || crystal cell || hub cell || proventriculus || wing blade dorsal compartment || adult heart |
57196,57196
57196 - EGF/Laminin
57196 - EGF/Laminin | 0.1009 | INHERITED FROM: germinal proliferation center hub || eye disc posterior to the morphogenetic furrow || hub cell || proventriculus || wing blade dorsal compartment |
54928,54928
54928 - RNA-binding domain, RBD
54928 - RNA-binding domain, RBD | 0.132 | INHERITED FROM: wing disc posterior compartment || imaginal disc posterior compartment || dorsal thoracic disc posterior compartment |
46966,46966
46966 - Spectrin repeat
46966 - Spectrin repeat | 0.1377 | INHERITED FROM: midgut epithelium || longitudinal connective || gut epithelial section || oocyte || adult protocerebrum || middle midgut || enterocyte || embryonic/larval alimentary canal || gut epithelium || embryonic/larval gut || copper cell |
46785,46785
46785 - "Winged helix" DNA-binding domain
46785 - "Winged helix" DNA-binding domain | 0.1793 | INHERITED FROM: eye-antennal disc |
48726,49265
48726 - Immunoglobulin
49265 - Fibronectin type III | 0.2333 | INHERITED FROM: LNv neuron || adult antennal lobe || s-LNv neuron || LN period neuron || adult antennal lobe glomerulus || lobe system of adult mushroom body || antennal lobe glomerulus |
48592,54849
48592 - GroEL equatorial domain-like
54849 - GroEL-intermediate domain like | 0.2575 | INHERITED FROM: adult dorsal vessel || adult heart |
54849,52029
54849 - GroEL-intermediate domain like
52029 - GroEL apical domain-like | 0.2575 | INHERITED FROM: adult dorsal vessel || adult heart |
47954,47954
47954 - Cyclin-like
47954 - Cyclin-like | 0.2821 | INHERITED FROM: morphogenetic furrow |
47459,158457
47459 - HLH, helix-loop-helix DNA-binding domain
158457 - Orange domain-like | 0.39 | INHERITED FROM: 5-6I || EL neuron || EG neuron || 5-6I of thorax |
49265,49265
49265 - Fibronectin type III
49265 - Fibronectin type III | 0.4445 | INHERITED FROM: lamina |
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
54768,54768
54768 - dsRNA-binding domain-like
54768 - dsRNA-binding domain-like | 0 | Direct |
75632,46785
75632 - Cullin homology domain
46785 - "Winged helix" DNA-binding domain | 0 | Direct |
49562,48371
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
48371 - ARM repeat | 0 | Direct |
55550,50044
55550 - SH2 domain
50044 - SH3-domain | 0 | Direct |
49417,81296
49417 - p53-like transcription factors
81296 - E set domains | 0 | Direct |
55945,55945
55945 - TATA-box binding protein-like
55945 - TATA-box binding protein-like | 0 | Direct |
54534,48452
54534 - FKBP-like
48452 - TPR-like | 0 | Direct |
48371,56112
48371 - ARM repeat
56112 - Protein kinase-like (PK-like) | 0 | Direct |
51206,51206
51206 - cAMP-binding domain-like
51206 - cAMP-binding domain-like | 0 | Direct |
52490,55307
52490 - Tubulin nucleotide-binding domain-like
55307 - Tubulin C-terminal domain-like | 0 | Direct |
47220,47220
47220 - alpha-catenin/vinculin-like
47220 - alpha-catenin/vinculin-like | 0 | Direct |
50044,55550
50044 - SH3-domain
55550 - SH2 domain | 0 | Direct |
55550,56112
55550 - SH2 domain
56112 - Protein kinase-like (PK-like) | 0 | Direct |
101912,103575
101912 - Sema domain
103575 - Plexin repeat | 0 | Direct |
47459,55785
47459 - HLH, helix-loop-helix DNA-binding domain
55785 - PYP-like sensor domain (PAS domain) | 0 | Direct |
57184,57184
57184 - Growth factor receptor domain
57184 - Growth factor receptor domain | 0 | Direct |
63748,63748
63748 - Tudor/PWWP/MBT
63748 - Tudor/PWWP/MBT | 0 | Direct |
74788,75632
74788 - Cullin repeat-like
75632 - Cullin homology domain | 0 | Direct |
47413,46689
47413 - lambda repressor-like DNA-binding domains
46689 - Homeodomain-like | 0 | Direct |
51045,51045
51045 - WW domain
51045 - WW domain | 0 | Direct |
48726,48726
48726 - Immunoglobulin
48726 - Immunoglobulin | 0.06424 | Inherited |
57196,57184
57196 - EGF/Laminin
57184 - Growth factor receptor domain | 0.07524 | Inherited |
57196,57196
57196 - EGF/Laminin
57196 - EGF/Laminin | 0.1009 | Inherited |
54928,54928
54928 - RNA-binding domain, RBD
54928 - RNA-binding domain, RBD | 0.132 | Inherited |
46966,46966
46966 - Spectrin repeat
46966 - Spectrin repeat | 0.1377 | Inherited |
46785,46785
46785 - "Winged helix" DNA-binding domain
46785 - "Winged helix" DNA-binding domain | 0.1793 | Inherited |
48726,49265
48726 - Immunoglobulin
49265 - Fibronectin type III | 0.2333 | Inherited |
48592,54849
48592 - GroEL equatorial domain-like
54849 - GroEL-intermediate domain like | 0.2575 | Inherited |
54849,52029
54849 - GroEL-intermediate domain like
52029 - GroEL apical domain-like | 0.2575 | Inherited |
47954,47954
47954 - Cyclin-like
47954 - Cyclin-like | 0.2821 | Inherited |
47459,158457
47459 - HLH, helix-loop-helix DNA-binding domain
158457 - Orange domain-like | 0.39 | Inherited |
49265,49265
49265 - Fibronectin type III
49265 - Fibronectin type III | 0.4445 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Triple) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
49562,48371,56112
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
48371 - ARM repeat
56112 - Protein kinase-like (PK-like) | 0 | DIRECT |
57196,49899,49899
57196 - EGF/Laminin
49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
74788,75632,46785
74788 - Cullin repeat-like
75632 - Cullin homology domain
46785 - "Winged helix" DNA-binding domain | 0 | DIRECT |
49899,49899,49899
49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
46966,46966,46966
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat | 0.07524 | INHERITED FROM: midgut epithelium || longitudinal connective || gut epithelial section || oocyte || middle midgut || enterocyte || embryonic/larval alimentary canal || follicle cell || gut epithelium || embryonic/larval gut || copper cell || midgut |
57196,57196,57196
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin | 0.1026 | INHERITED FROM: germinal proliferation center hub || eye disc posterior to the morphogenetic furrow || primary lobe of embryonic/larval lymph gland || hub cell || proventriculus || wing blade dorsal compartment |
48726,48726,48726
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin | 0.1121 | INHERITED FROM: LNv neuron || adult brain || s-LNv neuron || lobe system of adult mushroom body |
48726,48726,49265
48726 - Immunoglobulin
48726 - Immunoglobulin
49265 - Fibronectin type III | 0.132 | INHERITED FROM: LNv neuron || adult antennal lobe || s-LNv neuron || LN period neuron || adult antennal lobe glomerulus || lobe system of adult mushroom body || antennal lobe glomerulus |
48592,54849,52029
48592 - GroEL equatorial domain-like
54849 - GroEL-intermediate domain like
52029 - GroEL apical domain-like | 0.2575 | INHERITED FROM: adult dorsal vessel || adult heart |
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
49562,48371,56112
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
48371 - ARM repeat
56112 - Protein kinase-like (PK-like) | 0 | Direct |
57196,49899,49899
57196 - EGF/Laminin
49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
74788,75632,46785
74788 - Cullin repeat-like
75632 - Cullin homology domain
46785 - "Winged helix" DNA-binding domain | 0 | Direct |
49899,49899,49899
49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
46966,46966,46966
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat | 0.07524 | Inherited |
57196,57196,57196
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin | 0.1026 | Inherited |
48726,48726,48726
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin | 0.1121 | Inherited |
48726,48726,49265
48726 - Immunoglobulin
48726 - Immunoglobulin
49265 - Fibronectin type III | 0.132 | Inherited |
48592,54849,52029
48592 - GroEL equatorial domain-like
54849 - GroEL-intermediate domain like
52029 - GroEL apical domain-like | 0.2575 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Plot distribution on species Tree Of Life (sTOL) for Superfamily and/or Family domains annotated by this FA term
 |
Plot tree as:
| |
Download Newick format tree:
|
( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domain
architecture data for all genomes in SUPERFAMILY. The PAUP
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Plot distribution on species Tree Of Life (sTOL) for single supra-domains annotated by this FA term
|
Plot tree as:
| |
Download Newick format tree:
| |
Browsing in TREE OF LIFE:
|
( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
|
|
> BO Hierarchy > multi-tissue structure
