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CTD Chemicals (CC): Enzyme Inhibitors  
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Biomedical Ontology
Like Gene Ontology (GO), biomedical ontology such as phenotype ontology classifies and organizes gene-mutant/null phenotypic information from the very general at the top to more specific terms in the directed acyclic graph (DAG) by viewing an individual term as a node and its relations to parental terms (allowing for multiple parents) as directed edges. To navigate this hierarchy, we display all parental phenotypic terms to the current phenotypic term of interest ordered by their shortest distances to the current term. Also, only direct children phenotypic terms of the current phenotypic term are listed. Biomedical ontologies we have incorporated are as follows:
- Disease Ontology (DO) Ontology DO semantically integrates disease and medical vocabularies through extensive cross mapping of DO terms to MeSH, ICD, NCI’s thesaurus, SNOMED and OMIM.
- Human Phenotype (HP) Ontology HP captures phenotypic abnormalities that are described in OMIM, along with the corresponding disease-causing genes. It includes three complementary biological concepts: Mode_of_Inheritance (MI), ONset_and_clinical_course (ON), and Phenotypic_Abnormality (PA).
- Mouse Phenotype (MP) Ontology MP describes phenotypes of the mouse after a specific gene is genetically disrupted. Using it, Mouse Genome Informatics (MGI) provides high-coverate gene-level phenotypes for the mouse.
- Worm Phenotype (WP) Ontology WP classifies and organizes phenotype descriptions for C. elegans and other nematodes. Using it, WormBase provides primary resource for phenotype annotations for C. elegans.
- Yeast Phenotype (YP) Ontology Based on YP which is the major contributor to the ‘Ascomycete phenotype ontology’, Saccharomyces Genome Database (SGD) provides single mutant phenotypes for every gene in the yeast genome.
- Fly Phenotype (FP) Ontology FP refers to FlyBase controlled vocabulary. Specifically, a structured controlled vocabulary is used for the annotation of alleles (for their mutagen etc) in FlyBase.
- Fly Anatomy (FA) Ontology FA is a structured controlled vocabulary of the anatomy of Drosophila melanogaster, used for the description of phenotypes and where a gene is expressed.
- Zebrafish Anatomy (ZA) Ontology ZA displays anatomical terms of the zebrafish using standard anatomical nomenclature, together with affected genes.
- Xenopus Anatomy (XA) Ontology XA represents the lineage of tissues and the timing of development for frogs (Xenopus laevis and Xenopus tropicalis). It is used to annotate Xenopus gene expression patterns and mutant and morphant phenotypes.
- Arabidopsis Plant Ontology (AP) Ontology As a major contributor to Plant Ontology which describes plant anatomical and morphological structures (AN) and growth and developmental stages (DE), the Arabidopsis Information Resource (TAIR) provides arabidopsis plant ontology annotations for the model higher plant Arabidopsis thaliana.
- Enzyme Commission (EC) Ontology Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed.
- UniProtKB KeyWords (KW) Ontology Keywords in UniProtKB are controlled vocabulary, providing a summary of the entry content and are used to index UniProtKB/Swiss-Prot entries based on 10 categories (the category "Technical term" being excluded here). Each keyword is attributed manually to UniProtKB/Swiss-Prot entries and automatically to UniProtKB/TrEMBL entries (according to specific annotation rules).
- CTD Diseases (CD) Ontology CD is MEDIC disease vocabulary that is modified by CTD from the "Diseases" [C] branch of Medical Subject Headings (MeSH), combined with genetic disorders from the Online Mendelian Inheritance in OMIM database.
- CTD Chemicals (CC) Ontology CC is chemical vocabulary that is adapted by CTD from the "Chemicals and Drugs" category and Supplementary Concept Records of Medical Subject Headings (MeSH, a hierarchical vocabulary used to index articles for MEDLINE/PubMed).
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Root: CC Hierarchy (CTD chemicals from Comparative Toxicogenomics Database)
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Family( show details)
Highlighted in gray are those with FDR_all>0.001
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Helical domain of Sec23/24 | 0 | DIRECT |
| Group II chaperonin (CCT, TRIC), intermediate domain | 0 | DIRECT |
| Heat shock protein 90, HSP90, N-terminal domain | 0 | DIRECT |
| HSP90 C-terminal domain | 0 | DIRECT |
| Canonical RBD | 0 | DIRECT |
| Proteasome activator | 0 | DIRECT |
| Trunk domain of Sec23/24 | 0 | DIRECT |
| C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0 | DIRECT |
| C-terminal, gelsolin-like domain of Sec23/24 | 0 | DIRECT |
| beta-sandwich domain of Sec23/24 | 0 | DIRECT |
| N-terminal domain of alpha and beta subunits of F1 ATP synthase | 0 | DIRECT |
| Zn-finger domain of Sec23/24 | 0 | DIRECT |
| Hsp90 middle domain | 0 | DIRECT |
| BSD domain | 0 | DIRECT |
| Surp module (SWAP domain) | 0 | DIRECT |
| BAG domain | 0 | DIRECT |
| Eukaryotic type KH-domain (KH-domain type I) | 0.0000006496 | DIRECT |
| UBA domain | 0.000001542 | DIRECT |
| La domain | 0.000002278 | DIRECT |
| Double-stranded RNA-binding domain (dsRBD) | 0.000005684 | DIRECT |
| Group II chaperonin (CCT, TRIC), ATPase domain | 0.00002841 | DIRECT |
| Group II chaperonin (CCT, TRIC), apical domain | 0.00007302 | DIRECT |
| Class I aminoacyl-tRNA synthetases (RS), catalytic domain | 0.0001012 | DIRECT |
| a tRNA synthase domain | 0.0001424 | DIRECT |
| Cofilin-like | 0.0001634 | DIRECT |
| MIF4G domain-like | 0.0001634 | DIRECT |
| Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.0001634 | DIRECT |
| R3H domain | 0.0001634 | DIRECT |
| SAP domain | 0.0001925 | DIRECT |
| Ubiquitin-related | 0.0002289 | DIRECT |
| Armadillo repeat | 0.000299 | DIRECT |
| Tandem AAA-ATPase domain | 0.0003054 | DIRECT |
| Bcl-2 inhibitors of programmed cell death | 0.0003243 | DIRECT |
| EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 0.0003511 | DIRECT |
| Cold shock DNA-binding domain-like | 0.0006898 | DIRECT |
| Heat shock protein 70kD (HSP70), peptide-binding domain | 0.0008824 | DIRECT |
| Caspase catalytic domain | 0.001439 | INHERITED FROM: Trypsin Inhibitors || Cysteine Proteinase Inhibitors || Protease Inhibitors |
| Fibronectin type II module | 0.03041 | INHERITED FROM: Angiotensin-Converting Enzyme Inhibitors || Protease Inhibitors |
| Hemopexin-like domain | 0.04365 | INHERITED FROM: Phospholipase A2 Inhibitors || Matrix Metalloproteinase Inhibitors || Protease Inhibitors |
| Interferons/interleukin-10 (IL-10) | 0.05304 | INHERITED FROM: Protein Kinase Inhibitors |
| MMP N-terminal domain | 0.05559 | INHERITED FROM: Phospholipase A2 Inhibitors || Matrix Metalloproteinase Inhibitors || Protease Inhibitors |
| Rel/Dorsal transcription factors, DNA-binding domain | 0.06607 | INHERITED FROM: Protein Kinase Inhibitors |
| Matrix metalloproteases, catalytic domain | 0.1138 | INHERITED FROM: Phospholipase A2 Inhibitors || Matrix Metalloproteinase Inhibitors || Protease Inhibitors |
| Caspase recruitment domain, CARD | 0.1481 | INHERITED FROM: Cysteine Proteinase Inhibitors || Protease Inhibitors |
| C1 set domains (antibody constant domain-like) | 0.3952 | INHERITED FROM: Angiotensin-Converting Enzyme Inhibitors || Protease Inhibitors |
| MHC antigen-recognition domain | 0.4186 | INHERITED FROM: Angiotensin-Converting Enzyme Inhibitors || Protease Inhibitors |
| Protein kinases, catalytic subunit | 0.8373 | INHERITED FROM: Protein Kinase Inhibitors |
| Eukaryotic proteases | 1 | INHERITED FROM: Protease Inhibitors |
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Helical domain of Sec23/24 | 0 | Direct |
| Group II chaperonin (CCT, TRIC), intermediate domain | 0 | Direct |
| Heat shock protein 90, HSP90, N-terminal domain | 0 | Direct |
| HSP90 C-terminal domain | 0 | Direct |
| Canonical RBD | 0 | Direct |
| Proteasome activator | 0 | Direct |
| Trunk domain of Sec23/24 | 0 | Direct |
| C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0 | Direct |
| C-terminal, gelsolin-like domain of Sec23/24 | 0 | Direct |
| beta-sandwich domain of Sec23/24 | 0 | Direct |
| N-terminal domain of alpha and beta subunits of F1 ATP synthase | 0 | Direct |
| Zn-finger domain of Sec23/24 | 0 | Direct |
| Hsp90 middle domain | 0 | Direct |
| BSD domain | 0 | Direct |
| Surp module (SWAP domain) | 0 | Direct |
| BAG domain | 0 | Direct |
| Eukaryotic type KH-domain (KH-domain type I) | 0.0000006496 | Direct |
| UBA domain | 0.000001542 | Direct |
| La domain | 0.000002278 | Direct |
| Double-stranded RNA-binding domain (dsRBD) | 0.000005684 | Direct |
| Group II chaperonin (CCT, TRIC), ATPase domain | 0.00002841 | Direct |
| Group II chaperonin (CCT, TRIC), apical domain | 0.00007302 | Direct |
| Class I aminoacyl-tRNA synthetases (RS), catalytic domain | 0.0001012 | Direct |
| a tRNA synthase domain | 0.0001424 | Direct |
| Cofilin-like | 0.0001634 | Direct |
| MIF4G domain-like | 0.0001634 | Direct |
| Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.0001634 | Direct |
| R3H domain | 0.0001634 | Direct |
| SAP domain | 0.0001925 | Direct |
| Ubiquitin-related | 0.0002289 | Direct |
| Armadillo repeat | 0.000299 | Direct |
| Tandem AAA-ATPase domain | 0.0003054 | Direct |
| Bcl-2 inhibitors of programmed cell death | 0.0003243 | Direct |
| EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 0.0003511 | Direct |
| Cold shock DNA-binding domain-like | 0.0006898 | Direct |
| Heat shock protein 70kD (HSP70), peptide-binding domain | 0.0008824 | Direct |
| Caspase catalytic domain | 0.001439 | Inherited |
| Fibronectin type II module | 0.03041 | Inherited |
| Hemopexin-like domain | 0.04365 | Inherited |
| Interferons/interleukin-10 (IL-10) | 0.05304 | Inherited |
| MMP N-terminal domain | 0.05559 | Inherited |
| Rel/Dorsal transcription factors, DNA-binding domain | 0.06607 | Inherited |
| Matrix metalloproteases, catalytic domain | 0.1138 | Inherited |
| Caspase recruitment domain, CARD | 0.1481 | Inherited |
| C1 set domains (antibody constant domain-like) | 0.3952 | Inherited |
| MHC antigen-recognition domain | 0.4186 | Inherited |
| Protein kinases, catalytic subunit | 0.8373 | Inherited |
| Eukaryotic proteases | 1 | Inherited |
LINKTO: Domain2BO Download and Domain2BO Algorithm
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Supra-domain (Single)( show details)
Highlighted in gray are those with FDR>0.001
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Duplex) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
53300,81995 53300 - vWA-like 81995 - beta-sandwich domain of Sec23/24 | 0 | DIRECT |
100934,100934 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain | 0 | DIRECT |
54928,54928 54928 - RNA-binding domain, RBD 54928 - RNA-binding domain, RBD | 0 | DIRECT |
47060,55681 47060 - S15/NS1 RNA-binding domain 55681 - Class II aaRS and biotin synthetases | 0 | DIRECT |
81811,82754 81811 - Helical domain of Sec23/24 82754 - C-terminal, gelsolin-like domain of Sec23/24 | 0 | DIRECT |
81995,81811 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24 | 0 | DIRECT |
82919,53300 82919 - Zn-finger domain of Sec23/24 53300 - vWA-like | 0 | DIRECT |
52540,47917 52540 - P-loop containing nucleoside triphosphate hydrolases 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0 | DIRECT |
54768,54768 54768 - dsRNA-binding domain-like 54768 - dsRNA-binding domain-like | 0.0000001488 | DIRECT |
48592,54849 48592 - GroEL equatorial domain-like 54849 - GroEL-intermediate domain like | 0.0000007196 | DIRECT |
54849,52029 54849 - GroEL-intermediate domain like 52029 - GroEL apical domain-like | 0.00000253 | DIRECT |
54791,54791 54791 - Eukaryotic type KH-domain (KH-domain type I) 54791 - Eukaryotic type KH-domain (KH-domain type I) | 0.00000887 | DIRECT |
47095,47095 47095 - HMG-box 47095 - HMG-box | 0.00001088 | DIRECT |
48371,48371 48371 - ARM repeat 48371 - ARM repeat | 0.00001485 | DIRECT |
64268,103657 64268 - PX domain 103657 - BAR/IMD domain-like | 0.00009085 | DIRECT |
49899,52540 49899 - Concanavalin A-like lectins/glucanases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.00009085 | DIRECT |
46785,54928 46785 - "Winged helix" DNA-binding domain 54928 - RNA-binding domain, RBD | 0.00009085 | DIRECT |
53067,100920 53067 - Actin-like ATPase domain 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain | 0.0001001 | DIRECT |
52540,48019 52540 - P-loop containing nucleoside triphosphate hydrolases 48019 - post-AAA+ oligomerization domain-like | 0.0004589 | DIRECT |
47986,52129 47986 - DEATH domain 52129 - Caspase-like | 0.0005803 | DIRECT |
52540,-7 52540 - P-loop containing nucleoside triphosphate hydrolases -7 - CATH | 0.000733 | DIRECT |
55550,158235 55550 - SH2 domain 158235 - SOCS box-like | 0.02465 | INHERITED FROM: Protein Kinase Inhibitors |
47090,55486 47090 - PGBD-like 55486 - Metalloproteases ("zincins"), catalytic domain | 0.04309 | INHERITED FROM: Protease Inhibitors || Matrix Metalloproteinase Inhibitors || Phospholipase A2 Inhibitors |
49417,81296 49417 - p53-like transcription factors 81296 - E set domains | 0.05299 | INHERITED FROM: Protein Kinase Inhibitors |
57440,57440 57440 - Kringle-like 57440 - Kringle-like | 0.07103 | INHERITED FROM: Protease Inhibitors |
55486,50923 55486 - Metalloproteases ("zincins"), catalytic domain 50923 - Hemopexin-like domain | 0.2452 | INHERITED FROM: Protease Inhibitors || Matrix Metalloproteinase Inhibitors |
54452,48726 54452 - MHC antigen-recognition domain 48726 - Immunoglobulin | 0.3756 | INHERITED FROM: Protease Inhibitors || Angiotensin-Converting Enzyme Inhibitors |
48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin | 1 | INHERITED FROM: Protein Kinase Inhibitors |
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
53300,81995 53300 - vWA-like 81995 - beta-sandwich domain of Sec23/24 | 0 | Direct |
100934,100934 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain | 0 | Direct |
54928,54928 54928 - RNA-binding domain, RBD 54928 - RNA-binding domain, RBD | 0 | Direct |
47060,55681 47060 - S15/NS1 RNA-binding domain 55681 - Class II aaRS and biotin synthetases | 0 | Direct |
81811,82754 81811 - Helical domain of Sec23/24 82754 - C-terminal, gelsolin-like domain of Sec23/24 | 0 | Direct |
81995,81811 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24 | 0 | Direct |
82919,53300 82919 - Zn-finger domain of Sec23/24 53300 - vWA-like | 0 | Direct |
52540,47917 52540 - P-loop containing nucleoside triphosphate hydrolases 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0 | Direct |
54768,54768 54768 - dsRNA-binding domain-like 54768 - dsRNA-binding domain-like | 0.0000001488 | Direct |
48592,54849 48592 - GroEL equatorial domain-like 54849 - GroEL-intermediate domain like | 0.0000007196 | Direct |
54849,52029 54849 - GroEL-intermediate domain like 52029 - GroEL apical domain-like | 0.00000253 | Direct |
54791,54791 54791 - Eukaryotic type KH-domain (KH-domain type I) 54791 - Eukaryotic type KH-domain (KH-domain type I) | 0.00000887 | Direct |
47095,47095 47095 - HMG-box 47095 - HMG-box | 0.00001088 | Direct |
48371,48371 48371 - ARM repeat 48371 - ARM repeat | 0.00001485 | Direct |
64268,103657 64268 - PX domain 103657 - BAR/IMD domain-like | 0.00009085 | Direct |
49899,52540 49899 - Concanavalin A-like lectins/glucanases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.00009085 | Direct |
46785,54928 46785 - "Winged helix" DNA-binding domain 54928 - RNA-binding domain, RBD | 0.00009085 | Direct |
53067,100920 53067 - Actin-like ATPase domain 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain | 0.0001001 | Direct |
52540,48019 52540 - P-loop containing nucleoside triphosphate hydrolases 48019 - post-AAA+ oligomerization domain-like | 0.0004589 | Direct |
47986,52129 47986 - DEATH domain 52129 - Caspase-like | 0.0005803 | Direct |
52540,-7 52540 - P-loop containing nucleoside triphosphate hydrolases -7 - CATH | 0.000733 | Direct |
55550,158235 55550 - SH2 domain 158235 - SOCS box-like | 0.02465 | Inherited |
47090,55486 47090 - PGBD-like 55486 - Metalloproteases ("zincins"), catalytic domain | 0.04309 | Inherited |
49417,81296 49417 - p53-like transcription factors 81296 - E set domains | 0.05299 | Inherited |
57440,57440 57440 - Kringle-like 57440 - Kringle-like | 0.07103 | Inherited |
55486,50923 55486 - Metalloproteases ("zincins"), catalytic domain 50923 - Hemopexin-like domain | 0.2452 | Inherited |
54452,48726 54452 - MHC antigen-recognition domain 48726 - Immunoglobulin | 0.3756 | Inherited |
48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin | 1 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Triple) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
81995,81811,82754 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24 82754 - C-terminal, gelsolin-like domain of Sec23/24 | 0 | DIRECT |
53300,81995,81811 53300 - vWA-like 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24 | 0 | DIRECT |
48592,54849,52029 48592 - GroEL equatorial domain-like 54849 - GroEL-intermediate domain like 52029 - GroEL apical domain-like | 0.0000007196 | DIRECT |
54791,54791,54791 54791 - Eukaryotic type KH-domain (KH-domain type I) 54791 - Eukaryotic type KH-domain (KH-domain type I) 54791 - Eukaryotic type KH-domain (KH-domain type I) | 0.000001275 | DIRECT |
48371,48371,48371 48371 - ARM repeat 48371 - ARM repeat 48371 - ARM repeat | 0.00003462 | DIRECT |
53067,53067,100920 53067 - Actin-like ATPase domain 53067 - Actin-like ATPase domain 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain | 0.0001001 | DIRECT |
47090,55486,50923 47090 - PGBD-like 55486 - Metalloproteases ("zincins"), catalytic domain 50923 - Hemopexin-like domain | 0.1894 | INHERITED FROM: Protease Inhibitors || Matrix Metalloproteinase Inhibitors |
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
81995,81811,82754 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24 82754 - C-terminal, gelsolin-like domain of Sec23/24 | 0 | Direct |
53300,81995,81811 53300 - vWA-like 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24 | 0 | Direct |
48592,54849,52029 48592 - GroEL equatorial domain-like 54849 - GroEL-intermediate domain like 52029 - GroEL apical domain-like | 0.0000007196 | Direct |
54791,54791,54791 54791 - Eukaryotic type KH-domain (KH-domain type I) 54791 - Eukaryotic type KH-domain (KH-domain type I) 54791 - Eukaryotic type KH-domain (KH-domain type I) | 0.000001275 | Direct |
48371,48371,48371 48371 - ARM repeat 48371 - ARM repeat 48371 - ARM repeat | 0.00003462 | Direct |
53067,53067,100920 53067 - Actin-like ATPase domain 53067 - Actin-like ATPase domain 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain | 0.0001001 | Direct |
47090,55486,50923 47090 - PGBD-like 55486 - Metalloproteases ("zincins"), catalytic domain 50923 - Hemopexin-like domain | 0.1894 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Plot distribution on species Tree Of Life (sTOL) for Superfamily and/or Family domains annotated by this CC term
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Plot tree as:
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Download Newick format tree:
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( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domain
architecture data for all genomes in SUPERFAMILY. The PAUP
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Plot distribution on species Tree Of Life (sTOL) for single supra-domains annotated by this CC term
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Plot tree as:
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Download Newick format tree:
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Browsing in TREE OF LIFE:
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( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
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