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  Home > Genomes > NCBI plasmid sequences > gi|208702177|ref|YP_002267487.1|NC_011339

Domain assignment for gi|208702177|ref|YP_002267487.1|NC_011339 from NCBI plasmid sequences

Domain architecture

Domain assignment details

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Strong hits

Sequence:  gi|208702177|ref|YP_002267487.1|NC_011339
Domain Number 1 Region: 1739-2300
Classification Level Classification E-value
Superfamily Acetyl-CoA synthetase-like 2.49e-153
Family Acetyl-CoA synthetase-like 0.0000000067
Further Details:      
 
Domain Number 2 Region: 90-433,462-649
Classification Level Classification E-value
Superfamily Acetyl-CoA synthetase-like 1.44e-82
Family Acetyl-CoA synthetase-like 0.0002
Further Details:      
 
Domain Number 3 Region: 1501-1747
Classification Level Classification E-value
Superfamily CoA-dependent acyltransferases 5.56e-65
Family NRPS condensation domain (amide synthase) 0.028
Further Details:      
 
Domain Number 4 Region: 2831-3008
Classification Level Classification E-value
Superfamily CoA-dependent acyltransferases 2.22e-43
Family NRPS condensation domain (amide synthase) 0.009
Further Details:      
 
Domain Number 5 Region: 3009-3256
Classification Level Classification E-value
Superfamily CoA-dependent acyltransferases 2.45e-40
Family NRPS condensation domain (amide synthase) 0.023
Further Details:      
 
Domain Number 6 Region: 1319-1495
Classification Level Classification E-value
Superfamily CoA-dependent acyltransferases 2.74e-39
Family NRPS condensation domain (amide synthase) 0.039
Further Details:      
 
Domain Number 7 Region: 2372-2542
Classification Level Classification E-value
Superfamily CoA-dependent acyltransferases 5.78e-34
Family NRPS condensation domain (amide synthase) 0.021
Further Details:      
 
Domain Number 8 Region: 2552-2797
Classification Level Classification E-value
Superfamily CoA-dependent acyltransferases 6.56e-30
Family NRPS condensation domain (amide synthase) 0.042
Further Details:      
 
Domain Number 9 Region: 903-1102
Classification Level Classification E-value
Superfamily NAD(P)-binding Rossmann-fold domains 7.41e-29
Family Tyrosine-dependent oxidoreductases 0.0014
Further Details:      
 
Domain Number 10 Region: 2281-2351
Classification Level Classification E-value
Superfamily ACP-like 1.44e-16
Family Peptidyl carrier domain 0.0061
Further Details:      
 
Domain Number 11 Region: 1222-1329
Classification Level Classification E-value
Superfamily ACP-like 0.00000000000000183
Family Peptidyl carrier domain 0.0069
Further Details:      
 
Domain Number 12 Region: 3285-3370
Classification Level Classification E-value
Superfamily Acetyl-CoA synthetase-like 0.0000013
Family Acetyl-CoA synthetase-like 0.013
Further Details:      
 
Weak hits

Sequence:  gi|208702177|ref|YP_002267487.1|NC_011339
Domain Number - Region: 738-891
Classification Level Classification E-value
Superfamily NAD(P)-binding Rossmann-fold domains 0.00283
Family Tyrosine-dependent oxidoreductases 0.082
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|208702177|ref|YP_002267487.1|NC_011339
Sequence length 3374
Comment linear gramicidin synthetase subunit D [Bacillus cereus H3081.97 plasmid pH308197_258]
Sequence 
MKRVEEHDHIHVLNEIENECERRYGRSNIAIMLEKHGVHEQPLHIEDLFHEVEMQEHSRV
SRHETVLMTDKQCIDESGKPLALRFGEPLHLDDCTPKTLQEILKRAAKQAKDKGMTFVYE
DGHEEYLSYQEMLADAERLLKGLRNLGIQPGESILFQFKDNKHFVTAFWACILGGFLPTP
LGTAPIYSEQNAQVLKLYNTWQLLEQPIILTEFELKEEIAAIRTTLQRQEIVIHSIENVM
DTARDTNWFPCTEDTIVLNLLTSGSTGVPKCVQHKSKSIIARTVSNCIDRQLDEKEVSLN
WMPLDHVGGIVMCHIRDTYLMCQQVNCLISAFIENPLNWLHWIDAYSATFTWAPNFAFSL
INQYEEEIKSSSWNLSSMRYIVNGGEAVISSVGMKFLQLLQQHQLPSNCLIPTFGMSEVS
SGIIECHSFYTQTTNTGMLYVDKNSLDGNLQFTYEGHQNAIVFTEVGRPMPGIGIRIVDE
DNQCLSEDRIGRFQIHGPTVMNGYFKNDEANAESFTEDGWFDSGDLGFIHNGNLVITGRK
KDMIVVHGANYYNYEIEALVEQVPGVETTFVCATSVKSAEGAEELAIFFVPVINHVSVMF
ATMQQIKQIVARKMGITPKVIIPIQKEAFFKTDSGKITRNAFQKQFENGAYREITQKIDC
HLQNEKTLSQWFYREKLVESKLGKSVSSQKETYVFFRQGKSFHHVLKEKLTQHSVVIVDV
GETFGEIHPNHYQINPKNKMDYVRLFEELAKRNVEDQVFHLLHAWNYCDTVPTFRSVEDL
ANAQYLGVFSVMFALQAIMHAKLPLRRVTVIATNSVGLEAKEMNYSCSTLEGYVKTLPAE
FENLQVKYIDIEGKDIQFDTETVWKELQQQETIPVVLYRDEKRYKIGLEKVPMLEQKEKN
IPFQQQGFYIITGGLGGLGTLVAKLLLERYSANVLLLGRTEIETNAEKMRLLDSLKEYEQ
YGGTVQYKMCNVMDLDAMRKVVHSQEERLQQKVNGIIHLAGIIQEILIEKQTEKELHAMF
EAKVYASWVLHEIVKERQDCLYITTSSARTLLPGMTISAYCSANRFVENFAYYQRSQNVN
SYCFSWSFWNEIGMGTNLLIKNALIAKGFQLIDDQKGIYSLLAGLKGNEPNVFVGINHEK
EEMAHLIGTEEQETQQLTIYITPEYLHILEEVFSILNREEFGGLEKEIVILPKLPLDEYG
KVDQTRLAHTSDSRFGKKQHIVPRNDIEEKIAFIWEGLLNKKDISVLDHFFELGGDSLKA
TQMISALKKNFAVTITQQEFFQSSTVEELASLVEKKLSRTRTHEMDIVTFSDRGNVVEMS
SAQKRQWFLYEMDRENPYYNNTLVIRLTGEIHLPILRSSIIELVNKHETLRTTFVMVDGI
PSQIIADEELVEIEEIDLKHLSAEETLQKLEGLRQREANTAFKIENSAFRAKVILIDEKR
VEILLSVHHIVSDGWSMGILVKDIAEIYEDIRQWGESKQEPLPIQYADYTLWQNEFMKGE
EFSKQLSYWKEKLAEDIPVLDLPLDKPRPPIQTYRGKVKTFTLHENMTRMLKEICQEEEC
TLFMLLLSAFSSLLHRYTGQEDLVVGSLVANRNREQIEKLIGFFVNTLPLRINLHREMQF
TELLSQVKKTTIDAYDHQDVPFELLVDELQIERDSSRNALFQVLFVLQNAQLQAVDLEKA
TMELEILDSDTAKFDMSVQIFELEDTLSIKLEYNTDLFFDDTIERFLAHYETILASVIHN
QKAKIGELSILPQSEYTKLVSEWNEKSATYNGNQCIHELFEAAVHKTPSATALIYRNKEM
TYEDVNAQANALAHKLRDAGVGPNQVVGVLCDRSFEMVVGILAVLKAGGAYLPIDTAYPM
QRTEYVLQNSEATILLTKECYLKESLDFEGEVFYLDDARLFEGDRRDLQNINNPTNLAYI
IYTSGSTGNPKGVMVAHQSVVNLLLDLQEKYPVLAEDKHLLKTTYTFDVSVAEIFGWFHA
GGTLVIAGHGDEKDPEKLIQLIQCHKVTHINFVPSMLHAMLQALDEKDFAIMNRLKYIIV
AGEAVSPELCNRLYAHCPNVKLENLYGPTEGTIYATGFSIHKEMNVANVPIGKPLSHVET
YILDQNNQIVPIGVPGELCLGGICVAKGYMKEPVLTEEKFVVNPMKQSERMYRTGDLVRW
LADGNIEYLGRIDNQVKIRGFRIELGEIEAAIAALEDVVQTIVTTMTDHKGANKIVAYVV
SEKYDEERIREHVKKTLPQYMVPSYFVSMKALPLNKNGKVDRKQLHSVDLYETSMDTVIV
GPRNEKEAMLSVIWQELLGLENISVHDNFFKLGGDSILAIQMIRRVKQQNYYLNPKQIFQ
YQTIAELASKLQVQQVGILPEEGLVTGEIGVTPIQQWYFEQDFVNPHHWNLPALIQFETP
HEASVVSKALAALLTHHDALRLIYRRKDGKWVQRFDETLSTVSLDVFDAFPTGEEALYEV
CEQLQRQLNITEGPVLKAALFNFEDSRQALFIAVHHLVVDGVSWRILFEDIMNGIATLER
GEEIVLPKKTNSFKQWTTTLSQYANTEVALQEYDYWMKVDQHVTQPTALKSVATNTEEQA
TILTAQLDSVYTEKLMKEAHNAFHTEINDLLLTALYRTIVPWDNSNTMAIYLEGHGREEI
IPGMDLSRTVGWFTTLFPVCLASNGTTIAAQLMDVKETLRKIPNKGIGYGILKYMTNQVM
VGKEIKLQRNPGILFNYLGELQKDGANTIALASKETGIYHCPKATRETLLDFNLILQDGR
LNIYVTIHQQLLEDEQMKRLADVYVSKLKEVIDCCLAITESVYTPSDFPLASLTQQQLDA
LPVKVKDIYPLSPVQKGMLFHSVLHPESTTYFGQVHGTVTGTIDVEKLEEAWNIVVERHP
ILSTIYMWEGLEEPIQIVINHGQLKIHQVDISQYDESEQIKVLEKILREDRQRPFQLDEY
PLIRVALVKKNEYEYELIWSFHHISIDGWSIFLVLSEVVAAYKQLIQQRKVALPDAGKYK
SFIEWTNEQDQAKAKAFWKEYMKGFTAPTSLLGKTDKEEEQDEISQISLSLTKEETEKIN
HFVRQKGYTLNTIVQGALALLVRSDADVDDIVFGVTVSGRNAEIERVNKMAGLFINTLPL
RVQLHDGQTLQDVLTNVQQASLDLREYEYSLLTDIKEVSEIKNTNELFQCILVFENYPID
AQMKEEHEVITLGELHSYEKTNYDLTFIVIPGEELIMRVSYEKGRWDERILYHKLQNLKQ
TILKILDDCDVTLSEFTPISAEQESVILQGWSKEAQVLNLVDEQEEIYRTVNENVDGVEI
FILDAHAKPVPVGVPGEIYIATRNLYDDCGEWADWMEENAILNTFTSSENPFLYKTGDIG
IWTEAATIKILELI
Download sequence
Identical sequences gi|208702177|ref|YP_002267487.1|NC_011339 WP_012552712.1.91615

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.