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Domain assignment for gi|338729789|ref|YP_004661172.1|NC_015708 from NCBI plasmid sequences

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|338729789|ref|YP_004661172.1|NC_015708
Domain Number 1 Region: 1778-1900,1929-2149,2186-2207
Classification Level Classification E-value
Superfamily Thiolase-like 2.4e-85
Family Thiolase-related 0.0028
Further Details:      
 
Domain Number 2 Region: 3-367,402-424
Classification Level Classification E-value
Superfamily Thiolase-like 1.3e-78
Family Thiolase-related 0.0034
Further Details:      
 
Domain Number 3 Region: 2473-2736
Classification Level Classification E-value
Superfamily alpha/beta-Hydrolases 5.19e-41
Family Thioesterase domain of polypeptide, polyketide and fatty acid synthases 0.026
Further Details:      
 
Domain Number 4 Region: 1102-1341
Classification Level Classification E-value
Superfamily NAD(P)-binding Rossmann-fold domains 5.22e-35
Family Tyrosine-dependent oxidoreductases 0.00064
Further Details:      
 
Domain Number 5 Region: 1473-1551
Classification Level Classification E-value
Superfamily ACP-like 1.7e-16
Family Acyl-carrier protein (ACP) 0.013
Further Details:      
 
Domain Number 6 Region: 1575-1658
Classification Level Classification E-value
Superfamily ACP-like 2.22e-16
Family Acyl-carrier protein (ACP) 0.029
Further Details:      
 
Domain Number 7 Region: 1674-1795
Classification Level Classification E-value
Superfamily ACP-like 0.000000000000012
Family Acyl-carrier protein (ACP) 0.04
Further Details:      
 
Domain Number 8 Region: 1378-1449
Classification Level Classification E-value
Superfamily ACP-like 0.00000000000119
Family Acyl-carrier protein (ACP) 0.029
Further Details:      
 
Weak hits

Sequence:  gi|338729789|ref|YP_004661172.1|NC_015708
Domain Number - Region: 2397-2470
Classification Level Classification E-value
Superfamily ACP-like 0.00955
Family Acyl-carrier protein (ACP) 0.056
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|338729789|ref|YP_004661172.1|NC_015708
Sequence length 2750
Comment tmpB [Pseudoalteromonas sp. SANK 73390 plasmid pTML1]
Sequence
MSNQKIAIIGISGKYPGADNVDELWENLKQGKDTITEVPKSRWDHTLYYQAGSRVYGKSY
SKWGGFINGMDQFDSLFFNIAPKVAELTDPQERQFLQCAYHTIEDAGYSCEGLSERGPVG
VFCAVEYNEYLMYSQANTPVSALNASITNRVSYYCNFTGPSITIDTMCSGSISSVHLACQ
SIQNGECSAAIAGGVNLTLHPNKFILHGAGRFSSKTGRCHSFGDKASGYVASEGVGAVLL
KPLADAVADGDHIYGEILATAINHGGTSRTYTVPKASSQAAVISKALEQTALDPISYIEA
HGSGTALGDVIEVDGLQRAYSDAYLAKDEQGSPACLIGSIKSNIGHCESAAGIAGLTKVL
LQMRYKTIVPSIHSQIRNPYIDFENSPFEVPCDTQPWRVASGQKRVAGISAFGAGGSNAH
MVVQEYVAAQPLQYEDVNGPSYILLSAKAAEQLQTSVKQLYRALERETHSIHDVQNLPCI
AFTLQVGRTHHEHRLALSVNSIDDLKEQLAYILDNRLEDIAKPMQTWLGEIAKGKALEAF
VTANNLLYADLLSAADWPALIELWVQGYPVDWQALYHHGVPNKVSLPGYPFAKQRFWVPN
TDVQRTYPPLETLEQLADGVQSQVEHKVSYLQPLQSIIRLTGNESFIAQHVVNGMKILPG
MAYLELIREAIGRLFTPEQHYSINNITWRRPMIFHDECKQVVIELSSVPEGTQPVRFRIY
DMGDQQSGDYCRGYVQLCSNEPPANMANLQQLLATGTPIEVDKKALYSLFSQAGLEYGPA
FRAVESLQRSEQYVIGQLCVQQPLMKPFQSMAWPPELLDAALHCILGFYFDEQPSDNARD
SNKEPMVPFALASVREYTPLPESVWVILEAQKRTDSMQNIDLSLCDEQGNVCLQMIGYTA
RVMKKPEHNLQAPKHSVPPAPEGDMKLLAPTWHPQPLPIDNMATSLDMSSVWIVLLGDMT
QWHTQLSKRFVDTQIHCLNAPKEDNKLSIYCAQSYQYYAQALLEILQQALQSKENKPKRI
QLVVSSHSTQRVYAGLLSMLETGTHEHVIKLADMIMADSYTHLEAQLMRLGQANKSSCVD
LGTQQSYVRRWQLLPTIEQSSPWKEEGVYLITGGLGGLGKLFTQEILSHTQASTVILWGR
GELNSQRQQWITQCNAAGERVFYQAVDITQLTEVEGAIAKVLDMHSDITGILHAAGVLQD
GMIVRKSAEHMHQVLVPKVQGLLHLDHATRKCALDFFTMFSSISSALGAPGQADYAAANG
FMDWFAHDRAQRVAVGECAGHTLSINWPLWQDGGMRMPRHAMRELKETSGLLPLPSNIGF
EAFYYALAANVPQVLVLYGTGEQYKKLYNGLQVLDETYMEEPQHESISAHASINDNDVIS
AVSTLLKVPQSSIDATTAFFDIGFDSVSISELAIILTQKTGVELSPTVFYECTQINELTH
YLQTHMHNKIVAAVEARTEPVRTRAVSSPVNAQLIIGMVSELLKVPESSIDPSTAFADIG
FDSVSLGELAATLSDAFGIEISATLFYECTVVAELVDYLLAQLDSDNIEQRPQFILSAPV
EVKQTTTQSMSLNDAHIITVISSLLKVPESSIDADTTFEQIGFDSVSLSELAGTLAKRYD
IEISTTVFYECTTVGALTQHINAQLGGKEPSTYEVLPTSSLPPVHIKERAGLELSAEITS
IICEMLKIGRHDFDDHTPLGQLGFDSVSFAELSQKLSHRYGKDITPTIFYAHETISALVD
YLSSSDSDDPTSEPSSVGTTPTNVKTSVSSAHARAESQDQDSIAIIGMDGQFPGAADISQ
FWDNLERGKDCVTEIPSDRWDWRDVYGDTREDAQATLSKWGGFLSHIDQFDAAFFGISSY
EARQMDPQQRLLLQSAWHAIENAGYAPESLSGSNTGVYIGIAHTSGYSSVKKERELDGVS
SVEFSGPINAPSLGPNRISYFLNLKGPSEPVETACSSSLVALHRAVTALRSNDCELCLVG
GINVIVTAQGHINLSRAGLLSEAGQCRSFAANADGYVRSEGVATVLLKRLSAAERDGDNI
LAVIRNSKVGYTGKGSGFAAPNTNSQAALIKTCYEEKNIDPAQLSYIEAQGTGTEIGDAV
EFQALRKAFKGTQLNRCALASVKTHVGHMEMASGMASLLKVILQMQHNRVVANLHCDELN
PHIDIADSPFYIPPSTEQWEPTLDNRPRMAGINAFGFGGVNAHVILEQYQPNDRPSVVAP
EQPYAMLLSAKTLAQVETQASNLLALLAREPQLDLYRIAYTLQVGRSAMEERVAMVVHSK
AEFVERLTQISHGDYKAARLYKGSCSNNAPIITLLHSDASLQSVVNGWLRDRNLPMLASL
WCNGLSVAWQNMYQGETVVRVSLPGYPFEPTRYWIGESGKSQNILKEQPKDSSQYSKMEQ
QLLTLAQDVLADHEQLSITGELKLAGFSSLELLLWQQRIQDTLNIQVSTELLATSSSIRV
ITERLIEAPQQNSDKNEQGLVALSDEDAPGPSLICVPAAGAMLTSFYPLAKQLKDCMRLY
GFSHRGLNKSDIPHDSIQAMAQDYVSQLPPLSQQQTIYLLGHSLGASVVYEMACLLRNFG
HKVHIFMLDSQLYAQGDMSLSDFFQFFIQDTEIAKSLAHKQAHGEDVIEPLTQALLAEVS
ASAQYSHDYLQQLMRVYAQQILMGLEYIPSQKYDGDITLLLAQQGHMDGEHRQQTLAKYR
RYCLQDINIVSVSGGHYSVLANANVSDLAHHLRQTIPSSVPRHSDEVTYE
Download sequence
Identical sequences F8J3D4
gi|338729789|ref|YP_004661172.1|NC_015708

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