SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A1Y2J521 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A1Y2J521
Domain Number 1 Region: 94-431
Classification Level Classification E-value
Superfamily WD40 repeat-like 8.06e-96
Family WD40-repeat 0.0000000177
Further Details:      
 
Domain Number 2 Region: 3-76
Classification Level Classification E-value
Superfamily Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain 9.29e-24
Family Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain 0.00019
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) A0A1Y2J521
Sequence length 433
Comment (tr|A0A1Y2J521|A0A1Y2J521_PYCCO) nudF homolog {ECO:0000256|HAMAP-Rule:MF_03141} OX=1353009 OS=Trametes coccinea BRFM310. GN=PYCCODRAFT_1448710 OC=Agaricomycetes; Polyporales; Polyporaceae; Trametes.
Sequence
MSLLSERQKEELQKSILEYLHANNFTDAFNALKSETGIDYTPDPKAKYAGLLEKKWTSVI
RLQKKIMDLENRNAALHEELSLSPAKRAALQTDWVPRAPAAYVLKGHRGQVLKVAFHPTF
NLIASASEDATVKIWDWETGEFERTLKGHTRVVNDVAFDSKGNLLVTCSSDLFIKIWDVQ
NEWKNTKTFPGHEHTISSVRFMPGDQQIVSASRDQTIRIFDVASTHLVRTITGHTDWVRC
VDPCEDGRLIATCSNDQTARIIDPLTGETKMELRDHQHTVEVVVFAPISSYAAIRELAGL
PSTDRSNRPGAYVATGARDKTIKIWDTQTGQLLRTLQGHDNWVRSLVFHPSGKFLLSASD
DKTIRVWELATGRCVKTVEAHSHFINCMAWGPQAPTDPTKANGAPGSGKAEPDKFVNVVA
TGSVDQTIKIWLP
Download sequence
Identical sequences A0A1Y2J521

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]