SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for B3NPW0 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  B3NPW0
Domain Number 1 Region: 94-408
Classification Level Classification E-value
Superfamily WD40 repeat-like 9.16e-97
Family WD40-repeat 0.000000000278
Further Details:      
 
Domain Number 2 Region: 4-76
Classification Level Classification E-value
Superfamily Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain 4.71e-23
Family Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain 0.0000553
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) B3NPW0
Sequence length 411
Comment (sp|B3NPW0|LIS1_DROER) Lissencephaly-1 homolog {ECO:0000255|HAMAP-Rule:MF_03141} KW=Complete proteome OX=7220 OS=Drosophila erecta (Fruit fly). GN=Lis-1 OC=Ephydroidea; Drosophilidae; Drosophila; Sophophora.
Sequence
MKMVLSQRQREELNQAIADYLGSNGYADSLETFRKEADLSTEVEKKFGGLLEKKWTSVIR
LQKKVMELEAKLTEAEKEVIEGAPTKNKRTPGEWIPRPPEKFSLTGHRASITRVIFHPIF
GLMVSASEDATIRIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQ
QSYECIKTMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRM
VRVHIEGSIFATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGA
DNKKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFHPGGKYLVSASDD
KTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGSVDQTVKVWECR
Download sequence
Identical sequences B3NPW0 B4P6P9
FBpp0256772 XP_001975407.1.56816 XP_002092264.1.41174 FBpp0139123 7245.FBpp0256772

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]