SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for R9P1P7 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  R9P1P7
Domain Number 1 Region: 113-450
Classification Level Classification E-value
Superfamily WD40 repeat-like 1.37e-87
Family WD40-repeat 0.0000000125
Further Details:      
 
Domain Number 2 Region: 14-89
Classification Level Classification E-value
Superfamily Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain 6.02e-24
Family Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain 0.0002
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) R9P1P7
Sequence length 452
Comment (tr|R9P1P7|R9P1P7_PSEHS) nudF homolog {ECO:0000256|HAMAP-Rule:MF_03141} KW=Complete proteome; Reference proteome OX=1305764 OS=Pseudozyma hubeiensis (strain SY62) (Yeast). GN=PHSY_002803 OC=Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Pseudozyma.
Sequence
MSSLNGASSTSTSILSERQKDELHKSILDYFKTNNLHDSYATLLREANQEGFVPDPRAKY
AGLLEKKWTSVIRLQKKIMEMESRITQLTEELSAAPSAKRSASLSDWLPSTSSARHNMQG
HRLPVVKVTFHPVFSQIASASEDTTVKLWDWETGDFERTLKGHTKAVQDVDFDSKGNYVV
SCSSDLSIKVWDANNDYKNTKTLHGHDHSVSSVRFLPGDDYLVSASRDKTIKVWEFATGF
CTRTLHGHGEWVRSAIPSDDGKLLVSCSTDQTARVWDLATGETKQELRGHEHVVEAAIFA
PVSSYVAIRQLAGLTTPATKDTTANAPGAFVATGSRDKSIRIWDSSSGQCLKTLVGHDNW
VRGLAFSPNGKHLLSVSDDKTMRIWELTSGRCTRTIEAHQHFATSIAWGKAKIEAPIPPA
QDGEVEKKQPEARTVNVVATSSVDLSVKIWTP
Download sequence
Identical sequences R9P1P7
XP_012188815.1.99038

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]