SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > PDB chains (SCOP 1.75) > Immunodeficiency virus matrix proteins domains


Immunodeficiency virus matrix proteins family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

(show help)


PDB chains (SCOP 1.75) (PDB) has 6 significant domains in 6 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1ecwA   1.91e-54   0.00000494   21-100   1ed1 A:  
1l6nA   5.44e-115   0.000000728   21-132   1l6n A:2-130  
1tamA   1.11e-115   0.000001   21-132   1l6n A:2-130  
2golA   6.44e-116   0.000000728   22-133   1l6n A:2-130  
2h3iA   6.24e-116   0.000000728   20-131   1l6n A:2-130  
2jmgA   6.24e-116   0.000000728   20-131   1l6n A:2-130  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a Immunodeficiency virus matrix proteins domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   80943 80943
No Yes NCBI 2017_08 genome   8 8
No Yes Uniprot 2018_03 genome   55296 55292
No Yes NCBI viral sequences (Viral)   7 7
No Yes PDB chains (SCOP 1.75) (PDB)   6 6
No Yes Protein Data Bank (all PDB sequenc)   28 28
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   79 79
No Yes UniProt viral sequences (Viral)   25503 25499

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.