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Group II chaperonin (CCT, TRIC), ATPase domain family domain assignments
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PDB chains (SCOP 1.75)

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PDB chains (SCOP 1.75) (PDB) has 5 significant domains in 5 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1a6dA   3.88e-93   0.000000038   16-145,402-522   1a6d A:17-145,A:404-519  
1a6dB   1.03e-90   0.0000000472   15-144,403-522   1a6d B:20-144,B:404-521  
1q3qA   1.03e-90   0.0000000205   17-146,405-524   1q3q A:9-145,A:406-526  
1q3rA   2.05e-91   0.000000026   17-146,405-524   1q3q A:9-145,A:406-526  
1q3sA   4.91e-91   0.0000000214   17-146,405-524   1q3q A:9-145,A:406-526  

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View all assignments containing a Group II chaperonin (CCT, TRIC), ATPase domain domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   6039 6039
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 2 2
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 1 1
No Yes Takifugu rubripes 76_4 Torafugu 1 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Sarcoptes scabiei   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Entamoeba histolytica 1   2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Chlorella vulgaris   1 1
No Yes Cyanophora paradoxa   2 2
No Yes Albugo laibachii 22   2 2
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora capsici   1 1
No Yes Paramecium tetraurelia   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Naegleria gruberi   1 1
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Oligotropha carboxidovorans OM4   1 1
No Yes Nanoarchaeum equitans Kin4-M   1 1
No Yes Candidatus Caldiarchaeum subterraneum   2 2
No Yes Cenarchaeum symbiosum A   2 2
No Yes Candidatus Nitrosopumilus sp. AR2   2 2
No Yes Nitrosopumilus maritimus SCM1   2 2
No Yes Candidatus Korarchaeum cryptofilum OPF8   2 2
No Yes Acidilobus saccharovorans 345-15   2 2
No Yes Fervidicoccus fontis Kam940   2 2
No Yes Pyrolobus fumarii 1A   2 2
No Yes Hyperthermus butylicus DSM 5456   2 2
No Yes Thermogladius cellulolyticus 1633   2 2
No Yes Ignisphaera aggregans DSM 17230   2 2
No Yes Aeropyrum pernix K1   2 2
No Yes Ignicoccus hospitalis KIN4/I   2 2
No Yes Thermosphaera aggregans DSM 11486   2 2
No Yes Staphylothermus hellenicus DSM 12710   2 2
No Yes Staphylothermus marinus F1   2 2
No Yes Desulfurococcus fermentans DSM 16532   2 2
No Yes Desulfurococcus kamchatkensis 1221n   2 2
No Yes Desulfurococcus mucosus DSM 2162   2 2
No Yes Metallosphaera cuprina Ar-4   2 2
No Yes Metallosphaera sedula DSM 5348   2 2
No Yes Acidianus hospitalis W1   2 2
No Yes Sulfolobus tokodaii str. 7   3 3
No Yes Sulfolobus islandicus Y.N.15.51   2 2
No Yes Sulfolobus solfataricus P2   2 2
No Yes Sulfolobus acidocaldarius DSM 639   2 2
No Yes Thermofilum sp. 1910b   2 2
No Yes Thermofilum pendens Hrk 5   2 2
No Yes Vulcanisaeta moutnovskia 768-28   2 2
No Yes Vulcanisaeta distributa DSM 14429   2 2
No Yes Caldivirga maquilingensis IC-167   2 2
No Yes Pyrobaculum sp. 1860   2 2
No Yes Pyrobaculum calidifontis JCM 11548   2 2
No Yes Pyrobaculum arsenaticum DSM 13514   2 2
No Yes Pyrobaculum oguniense TE7   2 2
No Yes Thermoproteus neutrophilus V24Sta   2 2
No Yes Pyrobaculum aerophilum str. IM2   2 2
No Yes Pyrobaculum islandicum DSM 4184   2 2
No Yes Thermoproteus uzoniensis 768-20   2 2
No Yes Thermoproteus tenax Kra 1   2 2
No Yes halophilic archaeon DL31   2 2
No Yes Methanocella arvoryzae MRE50   4 4
No Yes Methanocella conradii HZ254   3 3
No Yes Methanocella paludicola SANAE   3 3
No Yes Methanosaeta harundinacea 6Ac   4 4
No Yes Methanosaeta thermophila PT   3 3
No Yes Methanosaeta concilii GP6   4 4
No Yes Methanosalsum zhilinae DSM 4017   3 3
No Yes Methanohalobium evestigatum Z-7303   3 3
No Yes Methanococcoides burtonii DSM 6242   3 3
No Yes Methanosarcina acetivorans C2A   3 3
No Yes Methanosarcina mazei Go1   3 3
No Yes Methanosarcina barkeri str. Fusaro   3 3
No Yes Methanohalophilus mahii DSM 5219   3 3
No Yes Methanosphaerula palustris E1-9c   2 2
No Yes Methanoregula boonei 6A8   4 4
No Yes Methanospirillum hungatei JF-1   2 2
No Yes Methanocorpusculum labreanum Z   2 2
No Yes Methanoplanus petrolearius DSM 11571   2 2
No Yes Methanoculleus bourgensis MS2   2 2
No Yes Methanoculleus marisnigri JR1   2 2
No Yes Methanopyrus kandleri AV19   1 1
No Yes Ferroglobus placidus DSM 10642   2 2
No Yes Archaeoglobus profundus DSM 5631   2 2
No Yes Archaeoglobus veneficus SNP6   2 2
No Yes Archaeoglobus fulgidus DSM 4304   2 2
No Yes Thermococcus sp. 4557   2 2
No Yes Thermococcus onnurineus NA1   2 2
No Yes Thermococcus kodakarensis KOD1   2 2
No Yes Thermococcus gammatolerans EJ3   2 2
No Yes Thermococcus sibiricus MM 739   2 2
No Yes Thermococcus barophilus MP   2 2
No Yes Pyrococcus sp. ST04   1 1
No Yes Pyrococcus yayanosii CH1   1 1
No Yes Pyrococcus horikoshii OT3   1 1
No Yes Pyrococcus abyssi GE5   1 1
No Yes Pyrococcus furiosus COM1   1 1
No Yes Thermoplasmatales archaeon BRNA1   2 2
No Yes Thermoplasma volcanium GSS1   2 2
No Yes Thermoplasma acidophilum DSM 1728   2 2
No Yes Picrophilus torridus DSM 9790   2 2
No Yes Salinarchaeum sp. Harcht-Bsk1   3 3
No Yes Halopiger xanaduensis SH-6   3 3
No Yes Haloterrigena turkmenica DSM 5511   3 3
No Yes Natrinema sp. J7-2   2 2
No Yes Natrialba magadii ATCC 43099   3 3
No Yes Halorubrum lacusprofundi ATCC 49239   2 2
No Yes Haloquadratum walsbyi DSM 16790   2 2
No Yes Halogeometricum borinquense DSM 11551   3 3
No Yes Haloferax mediterranei ATCC 33500   3 3
No Yes Haloferax volcanii DS2   3 3
No Yes Halomicrobium mukohataei DSM 12286   3 3
No Yes Halorhabdus utahensis DSM 12940   4 4
No Yes Natronomonas pharaonis DSM 2160   3 3
No Yes Haloarcula hispanica ATCC 33960   3 3
No Yes Haloarcula marismortui ATCC 43049   3 3
No Yes Halalkalicoccus jeotgali B3   3 3
No Yes Halobacterium salinarum R1   2 2
No Yes Halobacterium sp. NRC-1   2 2
No Yes Methanotorris igneus Kol 5   1 1
No Yes Methanocaldococcus sp. FS406-22   1 1
No Yes Methanocaldococcus fervens AG86   1 1
No Yes Methanocaldococcus vulcanius M7   1 1
No Yes methanocaldococcus infernus ME   2 2
No Yes Methanocaldococcus jannaschii DSM 2661   1 1
No Yes Methanothermococcus okinawensis IH1   1 1
No Yes Methanococcus aeolicus Nankai-3   1 1
No Yes Methanococcus maripaludis C5   1 1
No Yes Methanococcus voltae A3   1 1
No Yes Methanococcus vannielii SB   1 1
No Yes Methanothermus fervidus DSM 2088   2 2
No Yes Methanothermobacter marburgensis str. Marburg   2 2
No Yes Methanothermobacter thermautotrophicus str. Delta H   2 2
No Yes Methanosphaera stadtmanae DSM 3091   1 1
No Yes Methanobrevibacter sp. AbM4   2 2
No Yes Methanobrevibacter ruminantium M1   2 2
No Yes Methanobrevibacter smithii ATCC 35061   2 2
No Yes Complete genome sequence of Methanobacterium sp. Mb1   2 2
No Yes Aciduliprofundum sp. MAR08-339   2 2
No Yes Aciduliprofundum boonei T469   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Plasmodium falciparum Dd2   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Candidatus Nitrososphaera gargensis Ga9.2   6 6
No Yes Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1   2 2
No Yes Caldisphaera lagunensis DSM 15908   2 2
No Yes Aeropyrum camini SY1 = JCM 12091   2 2
No Yes Sulfolobus islandicus LAL14/1   2 2
No Yes Sulfolobus islandicus REY15A   2 2
No Yes Sulfolobus islandicus HVE10/4   2 2
No Yes Sulfolobus islandicus Y.G.57.14   2 2
No Yes Sulfolobus islandicus L.S.2.15   2 2
No Yes Sulfolobus islandicus M.16.27   2 2
No Yes Sulfolobus islandicus M.14.25   2 2
No Yes Sulfolobus islandicus M.16.4   2 2
No Yes Sulfolobus islandicus L.D.8.5   2 2
No Yes Sulfolobus solfataricus 98/2   2 2
No Yes Sulfolobus acidocaldarius SUSAZ   2 2
No Yes Sulfolobus acidocaldarius Ron12/I   2 2
No Yes Sulfolobus acidocaldarius N8   2 2
No Yes Methanomethylovorans hollandica DSM 15978   3 3
No Yes Methanolobus psychrophilus R15   3 3
No Yes Methanosarcina mazei Tuc01   3 3
No Yes Methanoregula formicica Methanoregula formicicum SMSP   3 3
No Yes Archaeoglobus sulfaticallidus PM70-1   2 2
No Yes Thermococcus sp. AM4   2 2
No Yes Thermococcus sp. CL1   2 2
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Pyrococcus sp. NA2   1 1
No Yes Pyrococcus furiosus DSM 3638   1 1
No Yes Candidatus Methanomethylophilus alvus Mx1201   2 2
No Yes Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1   2 2
No Yes Ferroplasma acidarmanus fer1   2 2
No Yes Halovivax ruber XH-70   3 3
No Yes Natrinema pellirubrum DSM 15624   3 3
No Yes Natronococcus occultus SP4   3 3
No Yes Natronobacterium gregoryi SP2   3 3
No Yes Haloquadratum walsbyi C23   2 2
No Yes Halorhabdus tiamatea SARL4B   4 4
No Yes Natronomonas moolapensis 8.8.11   3 3
No Yes Haloarcula hispanica N601   3 3
No Yes Methanococcus maripaludis X1   1 1
No Yes Methanococcus maripaludis C6   1 1
No Yes Methanococcus maripaludis C7   1 1
No Yes Methanococcus maripaludis S2   1 1
No Yes Methanobacterium sp. SWAN-1   2 2
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 1 1
No Yes 1_050719N (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   5 5
No Yes 3_050719R (meta-genome)   1 1
No Yes Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome)   2 2
No Yes Bath Hot Springs, filamentous community (meta-genome)   3 3
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   12 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   10 10
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   11 11
No Yes Human Gut Community Subject 7 (meta-genome)   2 2
No Yes Human Gut Community Subject 8 (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   1620 1620
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes Protozoadb 2010_08 (Protozoadb)   6 6
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   3 3
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   144 144
No Yes Uniprot 2018_03 genome   2333 2333
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   16 16
No Yes Global Ocean Sampling Expedition (GOS)   73 73
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   358 358
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   698 698
No Yes TargetDB (Targets)   7 7

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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