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Xenopus ANatomical entity (XAN): multi-tissue structure  
(show info)
Biomedical Ontology
Like Gene Ontology (GO), biomedical ontology such as phenotype ontology classifies and organizes gene-mutant/null phenotypic information from the very general at the top to more specific terms in the directed acyclic graph (DAG) by viewing an individual term as a node and its relations to parental terms (allowing for multiple parents) as directed edges. To navigate this hierarchy, we display all parental phenotypic terms to the current phenotypic term of interest ordered by their shortest distances to the current term. Also, only direct children phenotypic terms of the current phenotypic term are listed. Biomedical ontologies we have incorporated are as follows:
- Disease Ontology (DO) Ontology DO semantically integrates disease and medical vocabularies through extensive cross mapping of DO terms to MeSH, ICD, NCI’s thesaurus, SNOMED and OMIM.
- Human Phenotype (HP) Ontology HP captures phenotypic abnormalities that are described in OMIM, along with the corresponding disease-causing genes. It includes three complementary biological concepts: Mode_of_Inheritance (MI), ONset_and_clinical_course (ON), and Phenotypic_Abnormality (PA).
- Mouse Phenotype (MP) Ontology MP describes phenotypes of the mouse after a specific gene is genetically disrupted. Using it, Mouse Genome Informatics (MGI) provides high-coverate gene-level phenotypes for the mouse.
- Worm Phenotype (WP) Ontology WP classifies and organizes phenotype descriptions for C. elegans and other nematodes. Using it, WormBase provides primary resource for phenotype annotations for C. elegans.
- Yeast Phenotype (YP) Ontology Based on YP which is the major contributor to the ‘Ascomycete phenotype ontology’, Saccharomyces Genome Database (SGD) provides single mutant phenotypes for every gene in the yeast genome.
- Fly Phenotype (FP) Ontology FP refers to FlyBase controlled vocabulary. Specifically, a structured controlled vocabulary is used for the annotation of alleles (for their mutagen etc) in FlyBase.
- Fly Anatomy (FA) Ontology FA is a structured controlled vocabulary of the anatomy of Drosophila melanogaster, used for the description of phenotypes and where a gene is expressed.
- Zebrafish Anatomy (ZA) Ontology ZA displays anatomical terms of the zebrafish using standard anatomical nomenclature, together with affected genes.
- Xenopus Anatomy (XA) Ontology XA represents the lineage of tissues and the timing of development for frogs (Xenopus laevis and Xenopus tropicalis). It is used to annotate Xenopus gene expression patterns and mutant and morphant phenotypes.
- Arabidopsis Plant Ontology (AP) Ontology As a major contributor to Plant Ontology which describes plant anatomical and morphological structures (AN) and growth and developmental stages (DE), the Arabidopsis Information Resource (TAIR) provides arabidopsis plant ontology annotations for the model higher plant Arabidopsis thaliana.
- Enzyme Commission (EC) Ontology Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed.
- UniProtKB KeyWords (KW) Ontology Keywords in UniProtKB are controlled vocabulary, providing a summary of the entry content and are used to index UniProtKB/Swiss-Prot entries based on 10 categories (the category "Technical term" being excluded here). Each keyword is attributed manually to UniProtKB/Swiss-Prot entries and automatically to UniProtKB/TrEMBL entries (according to specific annotation rules).
- CTD Diseases (CD) Ontology CD is MEDIC disease vocabulary that is modified by CTD from the "Diseases" [C] branch of Medical Subject Headings (MeSH), combined with genetic disorders from the Online Mendelian Inheritance in OMIM database.
- CTD Chemicals (CC) Ontology CC is chemical vocabulary that is adapted by CTD from the "Chemicals and Drugs" category and Supplementary Concept Records of Medical Subject Headings (MeSH, a hierarchical vocabulary used to index articles for MEDLINE/PubMed).
Jump to [ Top · Hierarchy · Annotations ]
Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)
Jump to [ Top · Hierarchy ]
Family( show details)
Highlighted in gray are those with FDR_all>0.001
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Hedgehog (development protein), N-terminal signaling domain | 0 | DIRECT |
| PAS domain of steroid receptor coactivator 1A, NCo-A1 | 0 | DIRECT |
| Homeodomain | 0 | DIRECT |
| SMAD MH1 domain | 0 | DIRECT |
| 14-3-3 protein | 0 | DIRECT |
| RUNT domain | 0 | DIRECT |
| Guanido kinase catalytic domain | 0 | DIRECT |
| Transducin (alpha subunit), insertion domain | 0 | DIRECT |
| Paired domain | 0 | DIRECT |
| Pointed domain | 0 | DIRECT |
| Extracellular domain of cell surface receptors | 0 | DIRECT |
| Guanido kinase N-terminal domain | 0 | DIRECT |
| Alanine racemase-like, N-terminal domain | 0 | DIRECT |
| SMAD domain | 0 | DIRECT |
| Arrestin/Vps26-like | 0 | DIRECT |
| HLH, helix-loop-helix DNA-binding domain | 0 | DIRECT |
| Moesin tail domain | 0 | DIRECT |
| Noggin | 0 | DIRECT |
| Eukaryotic ODC-like | 0 | DIRECT |
| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain | 0 | DIRECT |
| Cyclin A/CDK2-associated p19, Skp2 | 0 | DIRECT |
| L domain | 0 | DIRECT |
| Nop domain | 0 | DIRECT |
| Synuclein | 0 | DIRECT |
| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain | 0 | DIRECT |
| Forkhead DNA-binding domain | 0.000000000006004 | DIRECT |
| ets domain | 0.000000004055 | DIRECT |
| Frizzled cysteine-rich domain | 0.000001702 | DIRECT |
| Fibroblast growth factors (FGF) | 0.000005435 | DIRECT |
| Intermediate filament protein, coiled coil region | 0.00001702 | DIRECT |
| Tubulin, GTPase domain | 0.00002749 | DIRECT |
| Tubulin, C-terminal domain | 0.00002749 | DIRECT |
| Growth factor receptor domain | 0.00003182 | DIRECT |
| Canonical RBD | 0.00003505 | DIRECT |
| HMG-box | 0.000187 | DIRECT |
| Sema domain | 0.0003376 | DIRECT |
| T-box | 0.0008034 | DIRECT |
| Hairy Orange domain | 0.001462 | INHERITED FROM: floor plate || chordoneural hinge || midbrain |
| POU-specific domain | 0.0021 | INHERITED FROM: pronephric tubule || distal tubule || retinal ganglion cell layer || proximal tubule || late distal tubule || early distal tubule || pronephric duct |
| Transforming growth factor (TGF)-beta | 0.003022 | INHERITED FROM: branchial arch 3 || branchial arch 1 || branchial arch 2 || dorsal aorta || aorta || mouth primordium || early distal tubule || branchial arch 4 || trunk vasculature |
| I set domains | 0.00316 | INHERITED FROM: retinal ganglion cell layer || retinal inner nuclear layer |
| LIM domain | 0.00364 | INHERITED FROM: ventrolateral thalamic nucleus || prosomere || amygdala || septum || medial amygdala || ventral septum || bed nucleus of the stria terminalis || basal forebrain || thalamus || central nucleus of the thalamus || prosomere 4 || anterior thalamic nucleus || pretectum |
| Hypoxia-inducible factor Hif2a, C-terminal domain | 0.005232 | INHERITED FROM: pronephric tubule || pronephric nephron |
| Plexin repeat | 0.005826 | INHERITED FROM: branchial arch |
| BRK domain-like | 0.007887 | INHERITED FROM: forebrain || hindbrain || midbrain |
| ARID domain | 0.01267 | INHERITED FROM: pronephric tubule |
| Histone lysine methyltransferases | 0.01955 | INHERITED FROM: hindbrain |
| Ovomucoid domain III-like | 0.04445 | INHERITED FROM: floor plate |
| Classic zinc finger, C2H2 | 0.0616 | INHERITED FROM: hindbrain || midbrain |
| AAT-like | 0.06297 | INHERITED FROM: pronephric duct |
| Class I aldolase | 0.07145 | INHERITED FROM: pronephric kidney |
| Glutathione peroxidase-like | 0.07424 | INHERITED FROM: pronephric tubule || pronephric nephron || distal tubule || proximal tubule || early distal tubule || early proximal tubule |
| Tropomyosin | 0.09126 | INHERITED FROM: outflow tract |
| Crystallins/Ca-binding development proteins | 0.1072 | INHERITED FROM: lens |
| Tandem AAA-ATPase domain | 0.1229 | INHERITED FROM: forebrain || hindbrain || midbrain |
| Multidrug efflux transporter AcrB transmembrane domain | 0.1515 | INHERITED FROM: epidermis |
| Fibronectin type III | 0.1847 | INHERITED FROM: retinal ganglion cell layer || retinal neural layer |
| Higher-molecular-weight phosphotyrosine protein phosphatases | 0.3656 | INHERITED FROM: retinal ganglion cell layer || retinal inner nuclear layer |
| Voltage-gated potassium channels | 0.5236 | INHERITED FROM: retinal inner plexiform layer |
| Tetramerization domain of potassium channels | 0.6007 | INHERITED FROM: retinal ganglion cell layer || retinal outer plexiform layer || retinal inner plexiform layer |
| TSP-1 type 1 repeat | 0.7201 | INHERITED FROM: rectal diverticulum |
| Calmodulin-like | 0.8231 | INHERITED FROM: ciliated epidermal cell |
| Rhodopsin-like | 0.9337 | INHERITED FROM: amygdala || septum || granule cell layer of the olfactory bulb || basal forebrain || medial pallium || pallium || anterior hypothalamus || preoptic area || diencephalon || eye photoreceptor cell || striatum || basal ganglion || hypothalamus |
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Hedgehog (development protein), N-terminal signaling domain | 0 | Direct |
| PAS domain of steroid receptor coactivator 1A, NCo-A1 | 0 | Direct |
| Homeodomain | 0 | Direct |
| SMAD MH1 domain | 0 | Direct |
| 14-3-3 protein | 0 | Direct |
| RUNT domain | 0 | Direct |
| Guanido kinase catalytic domain | 0 | Direct |
| Transducin (alpha subunit), insertion domain | 0 | Direct |
| Paired domain | 0 | Direct |
| Pointed domain | 0 | Direct |
| Extracellular domain of cell surface receptors | 0 | Direct |
| Guanido kinase N-terminal domain | 0 | Direct |
| Alanine racemase-like, N-terminal domain | 0 | Direct |
| SMAD domain | 0 | Direct |
| Arrestin/Vps26-like | 0 | Direct |
| HLH, helix-loop-helix DNA-binding domain | 0 | Direct |
| Moesin tail domain | 0 | Direct |
| Noggin | 0 | Direct |
| Eukaryotic ODC-like | 0 | Direct |
| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain | 0 | Direct |
| Cyclin A/CDK2-associated p19, Skp2 | 0 | Direct |
| L domain | 0 | Direct |
| Nop domain | 0 | Direct |
| Synuclein | 0 | Direct |
| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain | 0 | Direct |
| Forkhead DNA-binding domain | 0.000000000006004 | Direct |
| ets domain | 0.000000004055 | Direct |
| Frizzled cysteine-rich domain | 0.000001702 | Direct |
| Fibroblast growth factors (FGF) | 0.000005435 | Direct |
| Intermediate filament protein, coiled coil region | 0.00001702 | Direct |
| Tubulin, GTPase domain | 0.00002749 | Direct |
| Tubulin, C-terminal domain | 0.00002749 | Direct |
| Growth factor receptor domain | 0.00003182 | Direct |
| Canonical RBD | 0.00003505 | Direct |
| HMG-box | 0.000187 | Direct |
| Sema domain | 0.0003376 | Direct |
| T-box | 0.0008034 | Direct |
| Hairy Orange domain | 0.001462 | Inherited |
| POU-specific domain | 0.0021 | Inherited |
| Transforming growth factor (TGF)-beta | 0.003022 | Inherited |
| I set domains | 0.00316 | Inherited |
| LIM domain | 0.00364 | Inherited |
| Hypoxia-inducible factor Hif2a, C-terminal domain | 0.005232 | Inherited |
| Plexin repeat | 0.005826 | Inherited |
| BRK domain-like | 0.007887 | Inherited |
| ARID domain | 0.01267 | Inherited |
| Histone lysine methyltransferases | 0.01955 | Inherited |
| Ovomucoid domain III-like | 0.04445 | Inherited |
| Classic zinc finger, C2H2 | 0.0616 | Inherited |
| AAT-like | 0.06297 | Inherited |
| Class I aldolase | 0.07145 | Inherited |
| Glutathione peroxidase-like | 0.07424 | Inherited |
| Tropomyosin | 0.09126 | Inherited |
| Crystallins/Ca-binding development proteins | 0.1072 | Inherited |
| Tandem AAA-ATPase domain | 0.1229 | Inherited |
| Multidrug efflux transporter AcrB transmembrane domain | 0.1515 | Inherited |
| Fibronectin type III | 0.1847 | Inherited |
| Higher-molecular-weight phosphotyrosine protein phosphatases | 0.3656 | Inherited |
| Voltage-gated potassium channels | 0.5236 | Inherited |
| Tetramerization domain of potassium channels | 0.6007 | Inherited |
| TSP-1 type 1 repeat | 0.7201 | Inherited |
| Calmodulin-like | 0.8231 | Inherited |
| Rhodopsin-like | 0.9337 | Inherited |
LINKTO: Domain2BO Download and Domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Single)( show details)
Highlighted in gray are those with FDR>0.001
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Duplex) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
48034,55931 48034 - Guanido kinase N-terminal domain 55931 - Glutamine synthetase/guanido kinase | 0 | DIRECT |
48726,56436 48726 - Immunoglobulin 56436 - C-type lectin-like | 0 | DIRECT |
50044,50156 50044 - SH3-domain 50156 - PDZ domain-like | 0 | DIRECT |
57184,100895 57184 - Growth factor receptor domain 100895 - Kazal-type serine protease inhibitors | 0 | DIRECT |
56436,57535 56436 - C-type lectin-like 57535 - Complement control module/SCR domain | 0 | DIRECT |
52058,49265 52058 - L domain-like 49265 - Fibronectin type III | 0 | DIRECT |
57184,52058 57184 - Growth factor receptor domain 52058 - L domain-like | 0 | DIRECT |
51419,50621 51419 - PLP-binding barrel 50621 - Alanine racemase C-terminal domain-like | 0 | DIRECT |
47895,52540 47895 - Transducin (alpha subunit), insertion domain 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
52540,53254 52540 - P-loop containing nucleoside triphosphate hydrolases 53254 - Phosphoglycerate mutase-like | 0 | DIRECT |
57184,49265 57184 - Growth factor receptor domain 49265 - Fibronectin type III | 0 | DIRECT |
52058,57184 52058 - L domain-like 57184 - Growth factor receptor domain | 0 | DIRECT |
57716,57716 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) | 0.000004865 | DIRECT |
52490,55307 52490 - Tubulin nucleotide-binding domain-like 55307 - Tubulin C-terminal domain-like | 0.0000114 | DIRECT |
55785,55785 55785 - PYP-like sensor domain (PAS domain) 55785 - PYP-like sensor domain (PAS domain) | 0.0002879 | DIRECT |
101912,103575 101912 - Sema domain 103575 - Plexin repeat | 0.0003043 | DIRECT |
47459,55785 47459 - HLH, helix-loop-helix DNA-binding domain 55785 - PYP-like sensor domain (PAS domain) | 0.0004349 | DIRECT |
57440,57440 57440 - Kringle-like 57440 - Kringle-like | 0.0004997 | DIRECT |
47459,158457 47459 - HLH, helix-loop-helix DNA-binding domain 158457 - Orange domain-like | 0.0009139 | DIRECT |
54928,54928 54928 - RNA-binding domain, RBD 54928 - RNA-binding domain, RBD | 0.0032 | INHERITED FROM: pharyngeal arch |
64593,64593 64593 - Intermediate filament protein, coiled coil region 64593 - Intermediate filament protein, coiled coil region | 0.01904 | INHERITED FROM: epidermis |
49899,63887 49899 - Concanavalin A-like lectins/glucanases 63887 - P-domain of calnexin/calreticulin | 0.01904 | INHERITED FROM: pharyngeal arch |
47413,46689 47413 - lambda repressor-like DNA-binding domains 46689 - Homeodomain-like | 0.02015 | INHERITED FROM: retinal ganglion cell layer || pronephric tubule |
57716,48508 57716 - Glucocorticoid receptor-like (DNA-binding domain) 48508 - Nuclear receptor ligand-binding domain | 0.02576 | INHERITED FROM: hypothalamus |
48726,49265 48726 - Immunoglobulin 49265 - Fibronectin type III | 0.03096 | INHERITED FROM: retinal neural layer || retinal inner nuclear layer || retinal ganglion cell layer |
57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 0.04497 | INHERITED FROM: hindbrain |
52799,52799 52799 - (Phosphotyrosine protein) phosphatases II 52799 - (Phosphotyrosine protein) phosphatases II | 0.05458 | INHERITED FROM: retinal neural layer || retinal inner nuclear layer || retinal ganglion cell layer |
53300,53300 53300 - vWA-like 53300 - vWA-like | 0.05598 | INHERITED FROM: blood vessel |
57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.06445 | INHERITED FROM: head vasculature |
49265,49265 49265 - Fibronectin type III 49265 - Fibronectin type III | 0.1399 | INHERITED FROM: retinal inner nuclear layer |
82895,82895 82895 - TSP-1 type 1 repeat 82895 - TSP-1 type 1 repeat | 0.8577 | INHERITED FROM: rectal diverticulum |
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
48034,55931 48034 - Guanido kinase N-terminal domain 55931 - Glutamine synthetase/guanido kinase | 0 | Direct |
48726,56436 48726 - Immunoglobulin 56436 - C-type lectin-like | 0 | Direct |
50044,50156 50044 - SH3-domain 50156 - PDZ domain-like | 0 | Direct |
57184,100895 57184 - Growth factor receptor domain 100895 - Kazal-type serine protease inhibitors | 0 | Direct |
56436,57535 56436 - C-type lectin-like 57535 - Complement control module/SCR domain | 0 | Direct |
52058,49265 52058 - L domain-like 49265 - Fibronectin type III | 0 | Direct |
57184,52058 57184 - Growth factor receptor domain 52058 - L domain-like | 0 | Direct |
51419,50621 51419 - PLP-binding barrel 50621 - Alanine racemase C-terminal domain-like | 0 | Direct |
47895,52540 47895 - Transducin (alpha subunit), insertion domain 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
52540,53254 52540 - P-loop containing nucleoside triphosphate hydrolases 53254 - Phosphoglycerate mutase-like | 0 | Direct |
57184,49265 57184 - Growth factor receptor domain 49265 - Fibronectin type III | 0 | Direct |
52058,57184 52058 - L domain-like 57184 - Growth factor receptor domain | 0 | Direct |
57716,57716 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) | 0.000004865 | Direct |
52490,55307 52490 - Tubulin nucleotide-binding domain-like 55307 - Tubulin C-terminal domain-like | 0.0000114 | Direct |
55785,55785 55785 - PYP-like sensor domain (PAS domain) 55785 - PYP-like sensor domain (PAS domain) | 0.0002879 | Direct |
101912,103575 101912 - Sema domain 103575 - Plexin repeat | 0.0003043 | Direct |
47459,55785 47459 - HLH, helix-loop-helix DNA-binding domain 55785 - PYP-like sensor domain (PAS domain) | 0.0004349 | Direct |
57440,57440 57440 - Kringle-like 57440 - Kringle-like | 0.0004997 | Direct |
47459,158457 47459 - HLH, helix-loop-helix DNA-binding domain 158457 - Orange domain-like | 0.0009139 | Direct |
54928,54928 54928 - RNA-binding domain, RBD 54928 - RNA-binding domain, RBD | 0.0032 | Inherited |
64593,64593 64593 - Intermediate filament protein, coiled coil region 64593 - Intermediate filament protein, coiled coil region | 0.01904 | Inherited |
49899,63887 49899 - Concanavalin A-like lectins/glucanases 63887 - P-domain of calnexin/calreticulin | 0.01904 | Inherited |
47413,46689 47413 - lambda repressor-like DNA-binding domains 46689 - Homeodomain-like | 0.02015 | Inherited |
57716,48508 57716 - Glucocorticoid receptor-like (DNA-binding domain) 48508 - Nuclear receptor ligand-binding domain | 0.02576 | Inherited |
48726,49265 48726 - Immunoglobulin 49265 - Fibronectin type III | 0.03096 | Inherited |
57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 0.04497 | Inherited |
52799,52799 52799 - (Phosphotyrosine protein) phosphatases II 52799 - (Phosphotyrosine protein) phosphatases II | 0.05458 | Inherited |
53300,53300 53300 - vWA-like 53300 - vWA-like | 0.05598 | Inherited |
57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.06445 | Inherited |
49265,49265 49265 - Fibronectin type III 49265 - Fibronectin type III | 0.1399 | Inherited |
82895,82895 82895 - TSP-1 type 1 repeat 82895 - TSP-1 type 1 repeat | 0.8577 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Triple) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
57440,57440,57440 57440 - Kringle-like 57440 - Kringle-like 57440 - Kringle-like | 0 | DIRECT |
52058,57184,52058 52058 - L domain-like 57184 - Growth factor receptor domain 52058 - L domain-like | 0 | DIRECT |
48726,56436,56436 48726 - Immunoglobulin 56436 - C-type lectin-like 56436 - C-type lectin-like | 0 | DIRECT |
52058,49265,49265 52058 - L domain-like 49265 - Fibronectin type III 49265 - Fibronectin type III | 0 | DIRECT |
57184,52058,57184 57184 - Growth factor receptor domain 52058 - L domain-like 57184 - Growth factor receptor domain | 0 | DIRECT |
57184,52058,49265 57184 - Growth factor receptor domain 52058 - L domain-like 49265 - Fibronectin type III | 0 | DIRECT |
47459,55785,55785 47459 - HLH, helix-loop-helix DNA-binding domain 55785 - PYP-like sensor domain (PAS domain) 55785 - PYP-like sensor domain (PAS domain) | 0.00003972 | DIRECT |
49313,49313,49313 49313 - Cadherin-like 49313 - Cadherin-like 49313 - Cadherin-like | 0.000694 | DIRECT |
48371,48371,48371 48371 - ARM repeat 48371 - ARM repeat 48371 - ARM repeat | 0.002159 | INHERITED FROM: chordoneural hinge |
48726,48726,49265 48726 - Immunoglobulin 48726 - Immunoglobulin 49265 - Fibronectin type III | 0.002706 | INHERITED FROM: retinal inner nuclear layer || hindbrain || retinal ganglion cell layer |
50044,55550,56112 50044 - SH3-domain 55550 - SH2 domain 56112 - Protein kinase-like (PK-like) | 0.003228 | INHERITED FROM: branchial arch || forebrain |
57196,57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.01409 | INHERITED FROM: floor plate |
49899,57196,57196 49899 - Concanavalin A-like lectins/glucanases 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.02356 | INHERITED FROM: diencephalon |
90257,90257,90257 90257 - Myosin rod fragments 90257 - Myosin rod fragments 90257 - Myosin rod fragments | 0.02356 | INHERITED FROM: branchial arch |
57196,57196,49899 57196 - EGF/Laminin 57196 - EGF/Laminin 49899 - Concanavalin A-like lectins/glucanases | 0.06244 | INHERITED FROM: diencephalon || retinal neural layer || retina |
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
57440,57440,57440 57440 - Kringle-like 57440 - Kringle-like 57440 - Kringle-like | 0 | Direct |
52058,57184,52058 52058 - L domain-like 57184 - Growth factor receptor domain 52058 - L domain-like | 0 | Direct |
48726,56436,56436 48726 - Immunoglobulin 56436 - C-type lectin-like 56436 - C-type lectin-like | 0 | Direct |
52058,49265,49265 52058 - L domain-like 49265 - Fibronectin type III 49265 - Fibronectin type III | 0 | Direct |
57184,52058,57184 57184 - Growth factor receptor domain 52058 - L domain-like 57184 - Growth factor receptor domain | 0 | Direct |
57184,52058,49265 57184 - Growth factor receptor domain 52058 - L domain-like 49265 - Fibronectin type III | 0 | Direct |
47459,55785,55785 47459 - HLH, helix-loop-helix DNA-binding domain 55785 - PYP-like sensor domain (PAS domain) 55785 - PYP-like sensor domain (PAS domain) | 0.00003972 | Direct |
49313,49313,49313 49313 - Cadherin-like 49313 - Cadherin-like 49313 - Cadherin-like | 0.000694 | Direct |
48371,48371,48371 48371 - ARM repeat 48371 - ARM repeat 48371 - ARM repeat | 0.002159 | Inherited |
48726,48726,49265 48726 - Immunoglobulin 48726 - Immunoglobulin 49265 - Fibronectin type III | 0.002706 | Inherited |
50044,55550,56112 50044 - SH3-domain 55550 - SH2 domain 56112 - Protein kinase-like (PK-like) | 0.003228 | Inherited |
57196,57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.01409 | Inherited |
49899,57196,57196 49899 - Concanavalin A-like lectins/glucanases 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.02356 | Inherited |
90257,90257,90257 90257 - Myosin rod fragments 90257 - Myosin rod fragments 90257 - Myosin rod fragments | 0.02356 | Inherited |
57196,57196,49899 57196 - EGF/Laminin 57196 - EGF/Laminin 49899 - Concanavalin A-like lectins/glucanases | 0.06244 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Plot distribution on species Tree Of Life (sTOL) for Superfamily and/or Family domains annotated by this XA term
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Plot tree as:
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Download Newick format tree:
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( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domain
architecture data for all genomes in SUPERFAMILY. The PAUP
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Plot distribution on species Tree Of Life (sTOL) for single supra-domains annotated by this XA term
 |
Plot tree as:
| |
Download Newick format tree:
| |
Browsing in TREE OF LIFE:
|
( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
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