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Xenopus ANatomical entity (XAN): embryonic structure 
(show info)
Biomedical Ontology
Like Gene Ontology (GO), biomedical ontology such as phenotype ontology classifies and organizes gene-mutant/null phenotypic information from the very general at the top to more specific terms in the directed acyclic graph (DAG) by viewing an individual term as a node and its relations to parental terms (allowing for multiple parents) as directed edges. To navigate this hierarchy, we display all parental phenotypic terms to the current phenotypic term of interest ordered by their shortest distances to the current term. Also, only direct children phenotypic terms of the current phenotypic term are listed. Biomedical ontologies we have incorporated are as follows:
- Disease Ontology (DO) Ontology DO semantically integrates disease and medical vocabularies through extensive cross mapping of DO terms to MeSH, ICD, NCI’s thesaurus, SNOMED and OMIM.
- Human Phenotype (HP) Ontology HP captures phenotypic abnormalities that are described in OMIM, along with the corresponding disease-causing genes. It includes three complementary biological concepts: Mode_of_Inheritance (MI), ONset_and_clinical_course (ON), and Phenotypic_Abnormality (PA).
- Mouse Phenotype (MP) Ontology MP describes phenotypes of the mouse after a specific gene is genetically disrupted. Using it, Mouse Genome Informatics (MGI) provides high-coverate gene-level phenotypes for the mouse.
- Worm Phenotype (WP) Ontology WP classifies and organizes phenotype descriptions for C. elegans and other nematodes. Using it, WormBase provides primary resource for phenotype annotations for C. elegans.
- Yeast Phenotype (YP) Ontology Based on YP which is the major contributor to the ‘Ascomycete phenotype ontology’, Saccharomyces Genome Database (SGD) provides single mutant phenotypes for every gene in the yeast genome.
- Fly Phenotype (FP) Ontology FP refers to FlyBase controlled vocabulary. Specifically, a structured controlled vocabulary is used for the annotation of alleles (for their mutagen etc) in FlyBase.
- Fly Anatomy (FA) Ontology FA is a structured controlled vocabulary of the anatomy of Drosophila melanogaster, used for the description of phenotypes and where a gene is expressed.
- Zebrafish Anatomy (ZA) Ontology ZA displays anatomical terms of the zebrafish using standard anatomical nomenclature, together with affected genes.
- Xenopus Anatomy (XA) Ontology XA represents the lineage of tissues and the timing of development for frogs (Xenopus laevis and Xenopus tropicalis). It is used to annotate Xenopus gene expression patterns and mutant and morphant phenotypes.
- Arabidopsis Plant Ontology (AP) Ontology As a major contributor to Plant Ontology which describes plant anatomical and morphological structures (AN) and growth and developmental stages (DE), the Arabidopsis Information Resource (TAIR) provides arabidopsis plant ontology annotations for the model higher plant Arabidopsis thaliana.
- Enzyme Commission (EC) Ontology Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed.
- UniProtKB KeyWords (KW) Ontology Keywords in UniProtKB are controlled vocabulary, providing a summary of the entry content and are used to index UniProtKB/Swiss-Prot entries based on 10 categories (the category "Technical term" being excluded here). Each keyword is attributed manually to UniProtKB/Swiss-Prot entries and automatically to UniProtKB/TrEMBL entries (according to specific annotation rules).
- CTD Diseases (CD) Ontology CD is MEDIC disease vocabulary that is modified by CTD from the "Diseases" [C] branch of Medical Subject Headings (MeSH), combined with genetic disorders from the Online Mendelian Inheritance in OMIM database.
- CTD Chemicals (CC) Ontology CC is chemical vocabulary that is adapted by CTD from the "Chemicals and Drugs" category and Supplementary Concept Records of Medical Subject Headings (MeSH, a hierarchical vocabulary used to index articles for MEDLINE/PubMed).
Jump to [ Top · Hierarchy · Annotations ]
Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)
Jump to [ Top · Hierarchy ]
Family( show details)
Highlighted in gray are those with FDR_all>0.001
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Hedgehog (development protein), N-terminal signaling domain | 0 | DIRECT |
| Homeodomain | 0 | DIRECT |
| 14-3-3 protein | 0 | DIRECT |
| Guanido kinase catalytic domain | 0 | DIRECT |
| Pointed domain | 0 | DIRECT |
| Extracellular domain of cell surface receptors | 0 | DIRECT |
| SRF-like | 0 | DIRECT |
| Guanido kinase N-terminal domain | 0 | DIRECT |
| Alanine racemase-like, N-terminal domain | 0 | DIRECT |
| Cysteine-rich DNA binding domain, (DM domain) | 0 | DIRECT |
| Noggin | 0 | DIRECT |
| Eukaryotic ODC-like | 0 | DIRECT |
| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain | 0 | DIRECT |
| Ran-binding domain | 0 | DIRECT |
| LysM domain | 0 | DIRECT |
| Fibroblast growth factors (FGF) | 0 | DIRECT |
| SH3BGR (SH3-binding, glutamic acid-rich protein-like) | 0 | DIRECT |
| Synuclein | 0 | DIRECT |
| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain | 0 | DIRECT |
| Canonical RBD | 0.0000000000009336 | DIRECT |
| Forkhead DNA-binding domain | 0.000000000001068 | DIRECT |
| HLH, helix-loop-helix DNA-binding domain | 0.000000000001192 | DIRECT |
| ets domain | 0.00000004918 | DIRECT |
| Transforming growth factor (TGF)-beta | 0.0000005824 | DIRECT |
| Frizzled cysteine-rich domain | 0.000001428 | DIRECT |
| HMG-box | 0.00006502 | DIRECT |
| Sema domain | 0.0003888 | DIRECT |
| T-box | 0.0004228 | DIRECT |
| POU-specific domain | 0.001041 | INHERITED FROM: neural tube || presumptive midbrain-hindbrain boundary || neurogenic placode |
| LIM domain | 0.003577 | INHERITED FROM: cranial placode |
| Hairy Orange domain | 0.004202 | INHERITED FROM: paraxial mesoderm || neural tube || presomitic mesoderm || chordoneural hinge || lateral plate mesoderm || cranial placode |
| P4 origin-binding domain-like | 0.0057 | INHERITED FROM: neural tube || otic placode || optic vesicle || cranial placode || neurogenic placode |
| Group II chaperonin (CCT, TRIC), apical domain | 0.01038 | INHERITED FROM: anterior dorsal lateral plate region |
| Group II chaperonin (CCT, TRIC), intermediate domain | 0.01543 | INHERITED FROM: anterior dorsal lateral plate region |
| Plexin repeat | 0.01673 | INHERITED FROM: liver primordium || otic placode || cranial placode || presumptive midbrain-hindbrain boundary |
| Erythroid transcription factor GATA-1 | 0.02452 | INHERITED FROM: primordium || liver diverticulum || cardiac mesoderm || anterior dorsal lateral plate region || hematopoietic stem cell || lateral plate mesoderm || cardiac progenitor cell |
| VWC domain | 0.03109 | INHERITED FROM: neural tube || prechordal plate |
| Eukaryotic type KH-domain (KH-domain type I) | 0.03602 | INHERITED FROM: upper blastopore lip |
| Glutathione peroxidase-like | 0.05943 | INHERITED FROM: paraxial mesoderm || presomitic mesoderm || foregut || eye primordium || presumptive paraxial mesoderm |
| Paired domain | 0.06086 | INHERITED FROM: neural tube || primordium || cranial placode || anterior neural tube || posterior neural tube || neurogenic placode |
| Tandem AAA-ATPase domain | 0.07858 | INHERITED FROM: upper blastopore lip || vegetal yolk mass || blastopore || marginal zone || blastopore lip |
| Transducin (alpha subunit), insertion domain | 0.09902 | INHERITED FROM: dorsal marginal zone |
| Classic zinc finger, C2H2 | 0.1137 | INHERITED FROM: splanchnic layer of lateral plate mesoderm || presumptive rhombomere |
| Class I aldolase | 0.1206 | INHERITED FROM: primordium |
| Mannose 6-phosphate receptor domain | 0.2044 | INHERITED FROM: cement gland primordium |
| Alpha-macroglobulin receptor domain | 0.2253 | INHERITED FROM: foregut || midgut || hindgut |
| Arginine methyltransferase | 0.2253 | INHERITED FROM: optic vesicle |
| Tropomyosin | 0.2426 | INHERITED FROM: cardiac mesoderm |
| Globins | 0.2623 | INHERITED FROM: anterior dorsal lateral plate region || hematopoietic stem cell |
| Complement components | 0.3372 | INHERITED FROM: midgut || hindgut |
| LDL receptor-like module | 0.5839 | INHERITED FROM: hindgut |
| I set domains | 0.7438 | INHERITED FROM: optic vesicle |
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Hedgehog (development protein), N-terminal signaling domain | 0 | Direct |
| Homeodomain | 0 | Direct |
| 14-3-3 protein | 0 | Direct |
| Guanido kinase catalytic domain | 0 | Direct |
| Pointed domain | 0 | Direct |
| Extracellular domain of cell surface receptors | 0 | Direct |
| SRF-like | 0 | Direct |
| Guanido kinase N-terminal domain | 0 | Direct |
| Alanine racemase-like, N-terminal domain | 0 | Direct |
| Cysteine-rich DNA binding domain, (DM domain) | 0 | Direct |
| Noggin | 0 | Direct |
| Eukaryotic ODC-like | 0 | Direct |
| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain | 0 | Direct |
| Ran-binding domain | 0 | Direct |
| LysM domain | 0 | Direct |
| Fibroblast growth factors (FGF) | 0 | Direct |
| SH3BGR (SH3-binding, glutamic acid-rich protein-like) | 0 | Direct |
| Synuclein | 0 | Direct |
| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain | 0 | Direct |
| Canonical RBD | 0.0000000000009336 | Direct |
| Forkhead DNA-binding domain | 0.000000000001068 | Direct |
| HLH, helix-loop-helix DNA-binding domain | 0.000000000001192 | Direct |
| ets domain | 0.00000004918 | Direct |
| Transforming growth factor (TGF)-beta | 0.0000005824 | Direct |
| Frizzled cysteine-rich domain | 0.000001428 | Direct |
| HMG-box | 0.00006502 | Direct |
| Sema domain | 0.0003888 | Direct |
| T-box | 0.0004228 | Direct |
| POU-specific domain | 0.001041 | Inherited |
| LIM domain | 0.003577 | Inherited |
| Hairy Orange domain | 0.004202 | Inherited |
| P4 origin-binding domain-like | 0.0057 | Inherited |
| Group II chaperonin (CCT, TRIC), apical domain | 0.01038 | Inherited |
| Group II chaperonin (CCT, TRIC), intermediate domain | 0.01543 | Inherited |
| Plexin repeat | 0.01673 | Inherited |
| Erythroid transcription factor GATA-1 | 0.02452 | Inherited |
| VWC domain | 0.03109 | Inherited |
| Eukaryotic type KH-domain (KH-domain type I) | 0.03602 | Inherited |
| Glutathione peroxidase-like | 0.05943 | Inherited |
| Paired domain | 0.06086 | Inherited |
| Tandem AAA-ATPase domain | 0.07858 | Inherited |
| Transducin (alpha subunit), insertion domain | 0.09902 | Inherited |
| Classic zinc finger, C2H2 | 0.1137 | Inherited |
| Class I aldolase | 0.1206 | Inherited |
| Mannose 6-phosphate receptor domain | 0.2044 | Inherited |
| Alpha-macroglobulin receptor domain | 0.2253 | Inherited |
| Arginine methyltransferase | 0.2253 | Inherited |
| Tropomyosin | 0.2426 | Inherited |
| Globins | 0.2623 | Inherited |
| Complement components | 0.3372 | Inherited |
| LDL receptor-like module | 0.5839 | Inherited |
| I set domains | 0.7438 | Inherited |
LINKTO: Domain2BO Download and Domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Single)( show details)
Highlighted in gray are those with FDR>0.001
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Duplex) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
63501,50242
63501 - Frizzled cysteine-rich domain
50242 - TIMP-like | 0 | DIRECT |
47095,47095
47095 - HMG-box
47095 - HMG-box | 0 | DIRECT |
103647,103647
103647 - TSP type-3 repeat
103647 - TSP type-3 repeat | 0 | DIRECT |
48034,55931
48034 - Guanido kinase N-terminal domain
55931 - Glutamine synthetase/guanido kinase | 0 | DIRECT |
53223,51735
53223 - Aminoacid dehydrogenase-like, N-terminal domain
51735 - NAD(P)-binding Rossmann-fold domains | 0 | DIRECT |
49899,48726
49899 - Concanavalin A-like lectins/glucanases
48726 - Immunoglobulin | 0 | DIRECT |
52540,53254
52540 - P-loop containing nucleoside triphosphate hydrolases
53254 - Phosphoglycerate mutase-like | 0 | DIRECT |
54534,54534
54534 - FKBP-like
54534 - FKBP-like | 0 | DIRECT |
51419,50621
51419 - PLP-binding barrel
50621 - Alanine racemase C-terminal domain-like | 0 | DIRECT |
57716,57716
57716 - Glucocorticoid receptor-like (DNA-binding domain)
57716 - Glucocorticoid receptor-like (DNA-binding domain) | 0.0000002828 | DIRECT |
54928,54928
54928 - RNA-binding domain, RBD
54928 - RNA-binding domain, RBD | 0.00002837 | DIRECT |
101912,103575
101912 - Sema domain
103575 - Plexin repeat | 0.0006069 | DIRECT |
47954,47954
47954 - Cyclin-like
47954 - Cyclin-like | 0.0006069 | DIRECT |
47459,158457
47459 - HLH, helix-loop-helix DNA-binding domain
158457 - Orange domain-like | 0.003205 | INHERITED FROM: cranial placode || neural tube || chordoneural hinge || paraxial mesoderm || lateral plate mesoderm || presomitic mesoderm |
90209,90209
90209 - Ran binding protein zinc finger-like
90209 - Ran binding protein zinc finger-like | 0.01293 | INHERITED FROM: vegetal yolk mass || upper blastopore lip || blastopore || blastopore lip || marginal zone |
57440,57440
57440 - Kringle-like
57440 - Kringle-like | 0.02027 | INHERITED FROM: neurogenic placode |
103575,48726
103575 - Plexin repeat
48726 - Immunoglobulin | 0.02027 | INHERITED FROM: cranial placode |
47413,46689
47413 - lambda repressor-like DNA-binding domains
46689 - Homeodomain-like | 0.02338 | INHERITED FROM: neurogenic placode || cranial placode || neural tube || presumptive midbrain-hindbrain boundary |
57667,57667
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers | 0.06126 | INHERITED FROM: splanchnic layer of lateral plate mesoderm || presumptive rhombomere || lateral plate mesoderm |
55550,56112
55550 - SH2 domain
56112 - Protein kinase-like (PK-like) | 0.06563 | INHERITED FROM: non-involuting marginal zone |
47895,52540
47895 - Transducin (alpha subunit), insertion domain
52540 - P-loop containing nucleoside triphosphate hydrolases | 0.08206 | INHERITED FROM: dorsal marginal zone |
57196,57196
57196 - EGF/Laminin
57196 - EGF/Laminin | 0.1031 | INHERITED FROM: dorsal marginal zone |
57850,49599
57850 - RING/U-box
49599 - TRAF domain-like | 0.1055 | INHERITED FROM: optic vesicle |
57196,57184
57196 - EGF/Laminin
57184 - Growth factor receptor domain | 0.1105 | INHERITED FROM: circumblastoporal collar |
52540,52540
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases | 0.1764 | INHERITED FROM: vegetal yolk mass || upper blastopore lip || blastopore || blastopore lip |
57184,57184
57184 - Growth factor receptor domain
57184 - Growth factor receptor domain | 0.4755 | INHERITED FROM: dorsal marginal zone || presomitic mesoderm |
50044,55550
50044 - SH3-domain
55550 - SH2 domain | 0.5013 | INHERITED FROM: non-involuting marginal zone |
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
63501,50242
63501 - Frizzled cysteine-rich domain
50242 - TIMP-like | 0 | Direct |
47095,47095
47095 - HMG-box
47095 - HMG-box | 0 | Direct |
103647,103647
103647 - TSP type-3 repeat
103647 - TSP type-3 repeat | 0 | Direct |
48034,55931
48034 - Guanido kinase N-terminal domain
55931 - Glutamine synthetase/guanido kinase | 0 | Direct |
53223,51735
53223 - Aminoacid dehydrogenase-like, N-terminal domain
51735 - NAD(P)-binding Rossmann-fold domains | 0 | Direct |
49899,48726
49899 - Concanavalin A-like lectins/glucanases
48726 - Immunoglobulin | 0 | Direct |
52540,53254
52540 - P-loop containing nucleoside triphosphate hydrolases
53254 - Phosphoglycerate mutase-like | 0 | Direct |
54534,54534
54534 - FKBP-like
54534 - FKBP-like | 0 | Direct |
51419,50621
51419 - PLP-binding barrel
50621 - Alanine racemase C-terminal domain-like | 0 | Direct |
57716,57716
57716 - Glucocorticoid receptor-like (DNA-binding domain)
57716 - Glucocorticoid receptor-like (DNA-binding domain) | 0.0000002828 | Direct |
54928,54928
54928 - RNA-binding domain, RBD
54928 - RNA-binding domain, RBD | 0.00002837 | Direct |
101912,103575
101912 - Sema domain
103575 - Plexin repeat | 0.0006069 | Direct |
47954,47954
47954 - Cyclin-like
47954 - Cyclin-like | 0.0006069 | Direct |
47459,158457
47459 - HLH, helix-loop-helix DNA-binding domain
158457 - Orange domain-like | 0.003205 | Inherited |
90209,90209
90209 - Ran binding protein zinc finger-like
90209 - Ran binding protein zinc finger-like | 0.01293 | Inherited |
57440,57440
57440 - Kringle-like
57440 - Kringle-like | 0.02027 | Inherited |
103575,48726
103575 - Plexin repeat
48726 - Immunoglobulin | 0.02027 | Inherited |
47413,46689
47413 - lambda repressor-like DNA-binding domains
46689 - Homeodomain-like | 0.02338 | Inherited |
57667,57667
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers | 0.06126 | Inherited |
55550,56112
55550 - SH2 domain
56112 - Protein kinase-like (PK-like) | 0.06563 | Inherited |
47895,52540
47895 - Transducin (alpha subunit), insertion domain
52540 - P-loop containing nucleoside triphosphate hydrolases | 0.08206 | Inherited |
57196,57196
57196 - EGF/Laminin
57196 - EGF/Laminin | 0.1031 | Inherited |
57850,49599
57850 - RING/U-box
49599 - TRAF domain-like | 0.1055 | Inherited |
57196,57184
57196 - EGF/Laminin
57184 - Growth factor receptor domain | 0.1105 | Inherited |
52540,52540
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases | 0.1764 | Inherited |
57184,57184
57184 - Growth factor receptor domain
57184 - Growth factor receptor domain | 0.4755 | Inherited |
50044,55550
50044 - SH3-domain
55550 - SH2 domain | 0.5013 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Triple) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
47220,47220,47220
47220 - alpha-catenin/vinculin-like
47220 - alpha-catenin/vinculin-like
47220 - alpha-catenin/vinculin-like | 0 | DIRECT |
103647,103647,49899
103647 - TSP type-3 repeat
103647 - TSP type-3 repeat
49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
103647,103647,103647
103647 - TSP type-3 repeat
103647 - TSP type-3 repeat
103647 - TSP type-3 repeat | 0 | DIRECT |
49899,48726,49265
49899 - Concanavalin A-like lectins/glucanases
48726 - Immunoglobulin
49265 - Fibronectin type III | 0 | DIRECT |
57603,57603,57603
57603 - FnI-like domain
57603 - FnI-like domain
57603 - FnI-like domain | 0.004611 | INHERITED FROM: circumblastoporal collar || neural tube |
50044,55550,56112
50044 - SH3-domain
55550 - SH2 domain
56112 - Protein kinase-like (PK-like) | 0.01041 | INHERITED FROM: non-involuting marginal zone |
101912,103575,48726
101912 - Sema domain
103575 - Plexin repeat
48726 - Immunoglobulin | 0.02027 | INHERITED FROM: cranial placode |
57196,57196,57196
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin | 0.03602 | INHERITED FROM: non-neurogenic ectodermal placode |
57196,57196,57184
57196 - EGF/Laminin
57196 - EGF/Laminin
57184 - Growth factor receptor domain | 0.05082 | INHERITED FROM: dorsal marginal zone || presomitic mesoderm |
48371,48371,48371
48371 - ARM repeat
48371 - ARM repeat
48371 - ARM repeat | 0.05137 | INHERITED FROM: chordoneural hinge |
48726,49265,49265
48726 - Immunoglobulin
49265 - Fibronectin type III
49265 - Fibronectin type III | 0.1055 | INHERITED FROM: optic vesicle |
57196,57184,57184
57196 - EGF/Laminin
57184 - Growth factor receptor domain
57184 - Growth factor receptor domain | 0.1066 | INHERITED FROM: dorsal marginal zone || paraxial mesoderm || presomitic mesoderm |
57667,57667,57667
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers | 0.9551 | INHERITED FROM: splanchnic layer of lateral plate mesoderm |
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
47220,47220,47220
47220 - alpha-catenin/vinculin-like
47220 - alpha-catenin/vinculin-like
47220 - alpha-catenin/vinculin-like | 0 | Direct |
103647,103647,49899
103647 - TSP type-3 repeat
103647 - TSP type-3 repeat
49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
103647,103647,103647
103647 - TSP type-3 repeat
103647 - TSP type-3 repeat
103647 - TSP type-3 repeat | 0 | Direct |
49899,48726,49265
49899 - Concanavalin A-like lectins/glucanases
48726 - Immunoglobulin
49265 - Fibronectin type III | 0 | Direct |
57603,57603,57603
57603 - FnI-like domain
57603 - FnI-like domain
57603 - FnI-like domain | 0.004611 | Inherited |
50044,55550,56112
50044 - SH3-domain
55550 - SH2 domain
56112 - Protein kinase-like (PK-like) | 0.01041 | Inherited |
101912,103575,48726
101912 - Sema domain
103575 - Plexin repeat
48726 - Immunoglobulin | 0.02027 | Inherited |
57196,57196,57196
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin | 0.03602 | Inherited |
57196,57196,57184
57196 - EGF/Laminin
57196 - EGF/Laminin
57184 - Growth factor receptor domain | 0.05082 | Inherited |
48371,48371,48371
48371 - ARM repeat
48371 - ARM repeat
48371 - ARM repeat | 0.05137 | Inherited |
48726,49265,49265
48726 - Immunoglobulin
49265 - Fibronectin type III
49265 - Fibronectin type III | 0.1055 | Inherited |
57196,57184,57184
57196 - EGF/Laminin
57184 - Growth factor receptor domain
57184 - Growth factor receptor domain | 0.1066 | Inherited |
57667,57667,57667
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers | 0.9551 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Plot distribution on species Tree Of Life (sTOL) for Superfamily and/or Family domains annotated by this XA term
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Plot tree as:
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Download Newick format tree:
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( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domain
architecture data for all genomes in SUPERFAMILY. The PAUP
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Plot distribution on species Tree Of Life (sTOL) for single supra-domains annotated by this XA term
|
Plot tree as:
| |
Download Newick format tree:
| |
Browsing in TREE OF LIFE:
|
( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
|
|
> BO Hierarchy > embryonic structure
