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CTD Chemicals (CC): Polysaccharides 
(show info)
Biomedical Ontology
Like Gene Ontology (GO), biomedical ontology such as phenotype ontology classifies and organizes gene-mutant/null phenotypic information from the very general at the top to more specific terms in the directed acyclic graph (DAG) by viewing an individual term as a node and its relations to parental terms (allowing for multiple parents) as directed edges. To navigate this hierarchy, we display all parental phenotypic terms to the current phenotypic term of interest ordered by their shortest distances to the current term. Also, only direct children phenotypic terms of the current phenotypic term are listed. Biomedical ontologies we have incorporated are as follows:
- Disease Ontology (DO) Ontology DO semantically integrates disease and medical vocabularies through extensive cross mapping of DO terms to MeSH, ICD, NCI’s thesaurus, SNOMED and OMIM.
- Human Phenotype (HP) Ontology HP captures phenotypic abnormalities that are described in OMIM, along with the corresponding disease-causing genes. It includes three complementary biological concepts: Mode_of_Inheritance (MI), ONset_and_clinical_course (ON), and Phenotypic_Abnormality (PA).
- Mouse Phenotype (MP) Ontology MP describes phenotypes of the mouse after a specific gene is genetically disrupted. Using it, Mouse Genome Informatics (MGI) provides high-coverate gene-level phenotypes for the mouse.
- Worm Phenotype (WP) Ontology WP classifies and organizes phenotype descriptions for C. elegans and other nematodes. Using it, WormBase provides primary resource for phenotype annotations for C. elegans.
- Yeast Phenotype (YP) Ontology Based on YP which is the major contributor to the ‘Ascomycete phenotype ontology’, Saccharomyces Genome Database (SGD) provides single mutant phenotypes for every gene in the yeast genome.
- Fly Phenotype (FP) Ontology FP refers to FlyBase controlled vocabulary. Specifically, a structured controlled vocabulary is used for the annotation of alleles (for their mutagen etc) in FlyBase.
- Fly Anatomy (FA) Ontology FA is a structured controlled vocabulary of the anatomy of Drosophila melanogaster, used for the description of phenotypes and where a gene is expressed.
- Zebrafish Anatomy (ZA) Ontology ZA displays anatomical terms of the zebrafish using standard anatomical nomenclature, together with affected genes.
- Xenopus Anatomy (XA) Ontology XA represents the lineage of tissues and the timing of development for frogs (Xenopus laevis and Xenopus tropicalis). It is used to annotate Xenopus gene expression patterns and mutant and morphant phenotypes.
- Arabidopsis Plant Ontology (AP) Ontology As a major contributor to Plant Ontology which describes plant anatomical and morphological structures (AN) and growth and developmental stages (DE), the Arabidopsis Information Resource (TAIR) provides arabidopsis plant ontology annotations for the model higher plant Arabidopsis thaliana.
- Enzyme Commission (EC) Ontology Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed.
- UniProtKB KeyWords (KW) Ontology Keywords in UniProtKB are controlled vocabulary, providing a summary of the entry content and are used to index UniProtKB/Swiss-Prot entries based on 10 categories (the category "Technical term" being excluded here). Each keyword is attributed manually to UniProtKB/Swiss-Prot entries and automatically to UniProtKB/TrEMBL entries (according to specific annotation rules).
- CTD Diseases (CD) Ontology CD is MEDIC disease vocabulary that is modified by CTD from the "Diseases" [C] branch of Medical Subject Headings (MeSH), combined with genetic disorders from the Online Mendelian Inheritance in OMIM database.
- CTD Chemicals (CC) Ontology CC is chemical vocabulary that is adapted by CTD from the "Chemicals and Drugs" category and Supplementary Concept Records of Medical Subject Headings (MeSH, a hierarchical vocabulary used to index articles for MEDLINE/PubMed).
Jump to [ Top · Hierarchy · Annotations ]
Root: CC Hierarchy (CTD chemicals from Comparative Toxicogenomics Database)
| Shortest distance to current term (+ for parents, - for children) |
CC term [CC ID] <#Children> |
#Domains (Superfamily|Family) |
#Supra-domain (Single|Duplex|Triple) |
| + + 2: | Chemicals [MESH:D] <13> |
| + 1: | Carbohydrates [MESH:D002241] <26> | (187|254) |
(197|139|65) |
| 0: | Polysaccharides [MESH:D011134] <257> | (41|47) |
(45|21|9) |
| - 1: | Oligosaccharides [MESH:D009844] <431> | (3|4) |
(4|3|0) |
| - 1: | Polysaccharides, Bacterial [MESH:D011135] <133> | (28|34) |
(29|12|7) |
| - 1: | Sepharose [MESH:D012685] <122> | (0|0) |
(0|0|0) |
| - 1: | Glucans [MESH:D005936] <95> | (4|3) |
(4|1|0) |
| - 1: | Proteoglycans [MESH:D011509] <94> | (0|0) |
(0|0|0) |
| - 1: | Mannans [MESH:D008351] <56> | (0|0) |
(0|0|0) |
| - 1: | Galactans [MESH:D005685] <42> | (0|0) |
(0|0|0) |
| - 1: | Glycosaminoglycans [MESH:D006025] <41> | (9|8) |
(11|4|2) |
| - 1: | Alginates [MESH:D000464] <39> | (0|0) |
(0|0|0) |
| - 1: | Pectins [MESH:D010368] <35> | (0|0) |
(0|0|0) |
| - 1: | Chitin [MESH:D002686] <28> | (0|0) |
(0|0|0) |
| - 1: | Plant Gums [MESH:D053149] <20> | (0|0) |
(0|0|0) |
| - 1: | Xylans [MESH:D014990] <14> | (0|0) |
(0|0|0) |
| - 1: | Carrageenan [MESH:D002351] <13> | (0|0) |
(0|0|0) |
| - 1: | Fructans [MESH:D005630] <12> | (0|0) |
(0|0|0) |
| - 1: | Ficoll [MESH:D005362] <9> | (0|0) |
(0|0|0) |
| - 1: | Pentosan Sulfuric Polyester [MESH:D010426] <5> | (0|0) |
(0|0|0) |
| - 1: | Fungal Polysaccharides [MESH:D062610] <2> | (0|0) |
(0|0|0) |
| - 1: | (1-4)-2-amino-2-deoxy-beta-glucopyranuronan [MESH:C006523] | (0|0) |
(0|0|0) |
| - 1: | (1-4)-2-deoxy-2-sulfoamino-beta-D-glucopyranuronan [MESH:C007266] | (0|0) |
(0|0|0) |
| - 1: | 2-O-(4-O-methyl-alpha-D-glucupyranosyluronic acid)-D-xylose [MESH:C512774] | (0|0) |
(0|0|0) |
| - 1: | 6-deoxytalan [MESH:C070694] | (0|0) |
(0|0|0) |
| - 1: | 6-methoxyluteolin 7-O-(2-O-alpha-rhamnosyl-3-O-alpha-arabinosyl-beta-glucuronide)-4'-O-(2-O-alpha-rh [MESH:C477204] | (0|0) |
(0|0|0) |
| - 1: | AP1-1 polysaccharide [MESH:C000592306] | (0|0) |
(0|0|0) |
| - 1: | APS-1 polysaccharide [MESH:C507753] | (0|0) |
(0|0|0) |
| - 1: | APS-1 polysaccharide sulfate [MESH:C581367] | (0|0) |
(0|0|0) |
| - 1: | APS-1a polysaccharide [MESH:C581172] | (0|0) |
(0|0|0) |
| - 1: | APS-1d compound [MESH:C553872] | (0|0) |
(0|0|0) |
| - 1: | APS-3a polysaccharide [MESH:C581173] | (0|0) |
(0|0|0) |
| - 1: | Active Hexose Correlated Compound [MESH:C499366] | (0|0) |
(0|0|0) |
| - 1: | Am-25-d compound [MESH:C000614035] | (0|0) |
(0|0|0) |
| - 1: | Aquateric [MESH:C059120] | (0|0) |
(0|0|0) |
| - 1: | BRD-glucan, Aureobasidium [MESH:C502277] | (0|0) |
(0|0|0) |
| - 1: | CME-1 polysaccharide, Cordyceps sinensis [MESH:C000599929] | (0|0) |
(0|0|0) |
| - 1: | CPPS3 polysaccharide, Codonopsis pilosula [MESH:C551158] | (0|0) |
(0|0|0) |
| - 1: | Ebimar [MESH:C001130] | (0|0) |
(0|0|0) |
| - 1: | F1SS polysaccharide [MESH:C438547] | (0|0) |
(0|0|0) |
| - 1: | FPS-1 polysaccharide [MESH:C510406] | (0|0) |
(0|0|0) |
| - 1: | G1-4A polysaccharide [MESH:C542611] | (0|0) |
(0|0|0) |
| - 1: | GCS-100 [MESH:C505531] | (0|0) |
(0|0|0) |
| - 1: | GFP08 polysaccharide, Grateloupia filicina [MESH:C588405] | (0|0) |
(0|0|0) |
| - 1: | GFPS1b polysaccharide, Grifola frondosa [MESH:C517393] | (0|0) |
(0|0|0) |
| - 1: | GP90-1B polysaccharide [MESH:C000620796] | (0|0) |
(0|0|0) |
| - 1: | GPB polysaccharide [MESH:C539594] | (0|0) |
(0|0|0) |
| - 1: | GY785 DR [MESH:C572701] | (0|0) |
(0|0|0) |
| - 1: | GY785 DRS [MESH:C572702] | (0|0) |
(0|0|0) |
| - 1: | GnafC saccharide [MESH:C487922] | (0|0) |
(0|0|0) |
| - 1: | HP-I polysaccharide [MESH:C552906] | (0|0) |
(0|0|0) |
| - 1: | HPS3aS polysaccharide [MESH:C000591878] | (0|0) |
(0|0|0) |
| - 1: | HPS4-2A polysaccharide [MESH:C586575] | (0|0) |
(0|0|0) |
| - 1: | HS 142-1 [MESH:C072551] | (0|0) |
(0|0|0) |
| - 1: | Immunon [MESH:C459208] | (0|0) |
(0|0|0) |
| - 1: | Immurella [MESH:C459209] | (0|0) |
(0|0|0) |
| - 1: | Inutec SP1 [MESH:C514491] | (0|0) |
(0|0|0) |
| - 1: | Iodus 40 [MESH:C521863] | (0|0) |
(0|0|0) |
| - 1: | J6 polysaccharide [MESH:C524559] | (0|0) |
(0|0|0) |
| - 1: | Julibroside J8 [MESH:C513093] | (0|0) |
(0|0|0) |
| - 1: | LEP-2a compound [MESH:C000623091] | (0|0) |
(0|0|0) |
| - 1: | LSP1 polysaccharide [MESH:C545396] | (0|0) |
(0|0|0) |
| - 1: | LSP2 polysaccharide [MESH:C545395] | (0|0) |
(0|0|0) |
| - 1: | Lentinus edodes mycelia extract E-P-LEM [MESH:C061242] | (0|0) |
(0|0|0) |
| - 1: | M12L24 complex [MESH:C519247] | (0|0) |
(0|0|0) |
| - 1: | MAR 10 [MESH:C093381] | (0|0) |
(0|0|0) |
| - 1: | MMPX-B2 polysaccharide, Meretrix meretrix [MESH:C000611217] | (0|0) |
(0|0|0) |
| - 1: | MPS-III compound [MESH:C544785] | (0|0) |
(0|0|0) |
| - 1: | Mdp1 arabinogalactan [MESH:C452981] | (0|0) |
(0|0|0) |
| - 1: | N-acetylperosamine [MESH:C069468] | (0|0) |
(0|0|0) |
| - 1: | N-butanoylpolysialic acid [MESH:C519497] | (0|0) |
(0|0|0) |
| - 1: | Niferex [MESH:C078972] | (0|0) |
(0|0|0) |
| - 1: | P.GU 1 [MESH:C012615] | (0|0) |
(0|0|0) |
| - 1: | PCj3 polysaccharide [MESH:C052884] | (0|0) |
(0|0|0) |
| - 1: | PEPW80-1 polysaccharide, Phyllanthus emblica [MESH:C000622715] | (0|0) |
(0|0|0) |
| - 1: | PL-1 polysaccharide [MESH:C450191] | (0|0) |
(0|0|0) |
| - 1: | PL-4 polysaccharide [MESH:C450192] | (0|0) |
(0|0|0) |
| - 1: | PNPS-1 polysaccharide [MESH:C550302] | (0|0) |
(0|0|0) |
| - 1: | POJ-U1 polysaccharide [MESH:C581167] | (0|0) |
(0|0|0) |
| - 1: | PS-B1-AG polysaccharide [MESH:C000593607] | (0|0) |
(0|0|0) |
| - 1: | PS-B2-RG polysaccharide [MESH:C000593608] | (0|0) |
(0|0|0) |
| - 1: | Pen5 antigen, human [MESH:C084426] | (0|0) |
(0|0|0) |
| - 1: | Plant Mucilage [MESH:D062087] | (0|0) |
(0|0|0) |
| - 1: | RG-II, Panax ginseng [MESH:C572672] | (0|0) |
(0|0|0) |
| - 1: | Ro 09-0766 [MESH:C040931] | (0|0) |
(0|0|0) |
| - 1: | S-Lim [MESH:C033762] | (0|0) |
(0|0|0) |
| - 1: | SHU 454 [MESH:C040642] | (0|0) |
(0|0|0) |
| - 1: | SHU 508 [MESH:C059891] | (0|0) |
(0|0|0) |
| - 1: | SK10 galactofuranose [MESH:C587567] | (0|0) |
(0|0|0) |
| - 1: | SR 123781A [MESH:C446839] | (0|0) |
(0|0|0) |
| - 1: | SanOrg 123781 [MESH:C464792] | (0|0) |
(0|0|0) |
| - 1: | SeGLP-2B-1 [MESH:C545092] | (0|0) |
(0|0|0) |
| - 1: | TMP70W polysaccharide [MESH:C585657] | (0|0) |
(0|0|0) |
| - 1: | TV-3-IIIA-IIa [MESH:C444500] | (0|0) |
(0|0|0) |
| - 1: | Thuja polysaccharide g fraction [MESH:C103413] | (0|0) |
(0|0|0) |
| - 1: | TraumaDEX [MESH:C551011] | (0|0) |
(0|0|0) |
| - 1: | Trifyba [MESH:C076644] | (0|0) |
(0|0|0) |
| - 1: | Utipro [MESH:C000617212] | (0|0) |
(0|0|0) |
| - 1: | Vivida [MESH:C077444] | (0|0) |
(0|0|0) |
| - 1: | WPP60A [MESH:C000592593] | (0|0) |
(0|0|0) |
| - 1: | X 2616 [MESH:C042051] | (0|0) |
(0|0|0) |
| - 1: | acarviostatin III23 [MESH:C583433] | (0|0) |
(0|0|0) |
| - 1: | acetyl fucoidan [MESH:C547517] | (0|0) |
(0|0|0) |
| - 1: | achyranthan [MESH:C475099] | (0|0) |
(0|0|0) |
| - 1: | aconitan [MESH:C046404] | (0|0) |
(0|0|0) |
| - 1: | alfare [MESH:C048446] | (0|0) |
(0|0|0) |
| - 1: | alisman PII [MESH:C089547] | (0|0) |
(0|0|0) |
| - 1: | aloeride [MESH:C426304] | (0|0) |
(0|0|0) |
| - 1: | aluminium glycinate, myrtecaine drug combination [MESH:C011625] | (0|0) |
(0|0|0) |
| - 1: | alzhemed [MESH:C486237] | (0|0) |
(0|0|0) |
| - 1: | amicloral [MESH:C012717] | (0|0) |
(0|0|0) |
| - 1: | anemaran [MESH:C046197] | (0|0) |
(0|0|0) |
| - 1: | angelan [MESH:C515883] | (0|0) |
(0|0|0) |
| - 1: | araban [MESH:C030080] | (0|0) |
(0|0|0) |
| - 1: | arabinan sulfate [MESH:C078963] | (0|0) |
(0|0|0) |
| - 1: | armatan [MESH:C028510] | (0|0) |
(0|0|0) |
| - 1: | ascophyllin [MESH:C058519] | (0|0) |
(0|0|0) |
| - 1: | atractan [MESH:C046198] | (0|0) |
(0|0|0) |
| - 1: | aubazidan [MESH:C048936] | (0|0) |
(0|0|0) |
| - 1: | auto-cross-linked polysaccharide [MESH:C431864] | (0|0) |
(0|0|0) |
| - 1: | bis((beta-D-galactopyranosyl)oxy)-methyl-furan [MESH:C000606661] | (0|0) |
(0|0|0) |
| - 1: | bodimarin [MESH:C504055] | (0|0) |
(0|0|0) |
| - 1: | branan ferulate [MESH:C470177] | (0|0) |
(0|0|0) |
| - 1: | caryophyllan [MESH:C441250] | (0|0) |
(0|0|0) |
| - 1: | celosian [MESH:C105332] | (0|0) |
(0|0|0) |
| - 1: | cnidirhan AG [MESH:C079031] | (0|0) |
(0|0|0) |
| - 1: | coixan [MESH:C048343] | (0|0) |
(0|0|0) |
| - 1: | colanic acid [MESH:C004275] | (0|0) |
(0|0|0) |
| - 1: | colominic acid [MESH:C014420] | (0|0) |
(0|0|0) |
| - 1: | cordysinocan [MESH:C543354] | (0|0) |
(0|0|0) |
| - 1: | cotton xanthate-copper(II)-homosulfamine complex [MESH:C116962] | (0|0) |
(0|0|0) |
| - 1: | coupling sugar [MESH:C028377] | (0|0) |
(0|0|0) |
| - 1: | crylan [MESH:C096525] | (0|0) |
(0|0|0) |
| - 1: | cryptococcal polysaccharide [MESH:C014426] | (0|0) |
(0|0|0) |
| - 1: | davanat [MESH:C000612043] | (0|0) |
(0|0|0) |
| - 1: | dioscorans [MESH:C049894] | (0|0) |
(0|0|0) |
| - 1: | dipac [MESH:C038963] | (0|0) |
(0|0|0) |
| - 1: | discoidin-binding polysaccharide [MESH:C038657] | (0|0) |
(0|0|0) |
| - 1: | embryoglycan [MESH:C045474] | (0|0) |
(0|0|0) |
| - 1: | ephedran [MESH:C046405] | (0|0) |
(0|0|0) |
| - 1: | eremuran [MESH:C007611] | (0|0) |
(0|0|0) |
| - 1: | ferrum lek [MESH:C009766] | (0|0) |
(0|0|0) |
| - 1: | fruglamin [MESH:C064235] | (0|0) |
(0|0|0) |
| - 1: | fucoidan [MESH:C007789] | (5|5) |
(5|2|0) |
| - 1: | funoran [MESH:C093529] | (0|0) |
(0|0|0) |
| - 1: | galactosaminogalactan [MESH:C062157] | (0|0) |
(0|0|0) |
| - 1: | galactosaminoglycan [MESH:C007815] | (0|0) |
(0|0|0) |
| - 1: | galactoxylomannan [MESH:C043689] | (0|0) |
(0|0|0) |
| - 1: | ganglioside GAA-7 [MESH:C578920] | (0|0) |
(0|0|0) |
| - 1: | ganoderan A [MESH:C047406] | (0|0) |
(0|0|0) |
| - 1: | ganoderan B [MESH:C047407] | (0|0) |
(0|0|0) |
| - 1: | ganoderic acid B [MESH:C476673] | (0|0) |
(0|0|0) |
| - 1: | gellan sulfate [MESH:C470030] | (0|0) |
(0|0|0) |
| - 1: | genistein combined polysaccharide [MESH:C473311] | (0|0) |
(0|0|0) |
| - 1: | gepsin [MESH:C519079] | (0|0) |
(0|0|0) |
| - 1: | ginsan [MESH:C111520] | (0|0) |
(0|0|0) |
| - 1: | ginsenan PA [MESH:C091866] | (0|0) |
(0|0|0) |
| - 1: | ginsenan S-IIA [MESH:C111753] | (0|0) |
(0|0|0) |
| - 1: | glucanchitin [MESH:C029182] | (0|0) |
(0|0|0) |
| - 1: | glucorhamnan [MESH:C068965] | (0|0) |
(0|0|0) |
| - 1: | glucuronoxylomannan [MESH:C027478] | (1|1) |
(1|0|0) |
| - 1: | glycan sialylneolacto-N-tetraose c [MESH:C581046] | (0|0) |
(0|0|0) |
| - 1: | glyloid [MESH:C018558] | (0|0) |
(0|0|0) |
| - 1: | granulose [MESH:C002819] | (0|0) |
(0|0|0) |
| - 1: | hemicellulose [MESH:C007916] | (0|0) |
(0|0|0) |
| - 1: | heteroglycan F [MESH:C061013] | (0|0) |
(0|0|0) |
| - 1: | hydroxypropyl guar [MESH:C519976] | (0|0) |
(0|0|0) |
| - 1: | ichythyosan [MESH:C037966] | (0|0) |
(0|0|0) |
| - 1: | immolina [MESH:C515194] | (0|0) |
(0|0|0) |
| - 1: | inositol phosphate glycan [MESH:C028039] | (0|0) |
(0|0|0) |
| - 1: | inositol-glycan [MESH:C068698] | (0|0) |
(0|0|0) |
| - 1: | iron polyisomaltosate [MESH:C539743] | (0|0) |
(0|0|0) |
| - 1: | isolichenan [MESH:C069683] | (0|0) |
(0|0|0) |
| - 1: | isolichenin [MESH:C001477] | (0|0) |
(0|0|0) |
| - 1: | kefir grain polysaccharide [MESH:C050180] | (0|0) |
(0|0|0) |
| - 1: | lacto-N-fucopentaose III [MESH:C434666] | (0|0) |
(0|0|0) |
| - 1: | lactosaminoglycan [MESH:C039448] | (0|0) |
(0|0|0) |
| - 1: | lactosillan [MESH:C036281] | (0|0) |
(0|0|0) |
| - 1: | lambda spirulinan [MESH:C068071] | (0|0) |
(0|0|0) |
| - 1: | laminaridextrins [MESH:C022825] | (0|0) |
(0|0|0) |
| - 1: | laminarin sulfate [MESH:C053460] | (0|0) |
(0|0|0) |
| - 1: | lithosperman [MESH:C046402] | (0|0) |
(0|0|0) |
| - 1: | lutean [MESH:C001560] | (0|0) |
(0|0|0) |
| - 1: | maltodextrin [MESH:C008315] | (0|0) |
(0|0|0) |
| - 1: | mangion-purified polysaccharide (Candida albicans) [MESH:C044202] | (0|0) |
(0|0|0) |
| - 1: | mannoglucan [MESH:C493955] | (0|0) |
(0|0|0) |
| - 1: | marinactan [MESH:C038711] | (0|0) |
(0|0|0) |
| - 1: | melanocidin A [MESH:C046077] | (0|0) |
(0|0|0) |
| - 1: | melanocidin B [MESH:C046078] | (0|0) |
(0|0|0) |
| - 1: | mucoric acid [MESH:C088556] | (0|0) |
(0|0|0) |
| - 1: | mytilan [MESH:C030207] | (0|0) |
(0|0|0) |
| - 1: | neurotropin [MESH:C010491] | (0|0) |
(0|0|0) |
| - 1: | nostoflan [MESH:C502997] | (0|0) |
(0|0|0) |
| - 1: | nucleoticidin [MESH:C047542] | (0|0) |
(0|0|0) |
| - 1: | okara, Glycine max [MESH:C412882] | (0|0) |
(0|0|0) |
| - 1: | palustran [MESH:C047612] | (0|0) |
(0|0|0) |
| - 1: | panaxans [MESH:C044185] | (0|0) |
(0|0|0) |
| - 1: | peonan PA [MESH:C091864] | (0|0) |
(0|0|0) |
| - 1: | pharmaceutical FS-1 [MESH:C000599496] | (0|0) |
(0|0|0) |
| - 1: | phosphohexoglycan [MESH:C010503] | (0|0) |
(0|0|0) |
| - 1: | poligeenan [MESH:C014157] | (0|0) |
(0|0|0) |
| - 1: | poly((1-6)-2,5-anhydro-3,4-di-O-methyl-D-glucitol) [MESH:C099557] | (0|0) |
(0|0|0) |
| - 1: | poly((1-6)-2,5-anhydro-D-glucitol) [MESH:C099556] | (0|0) |
(0|0|0) |
| - 1: | poly(2,8-deaminoneuraminic acid) [MESH:C099023] | (0|0) |
(0|0|0) |
| - 1: | poly(aldehyde guluronate) [MESH:C413302] | (0|0) |
(0|0|0) |
| - 1: | poly(galactosylglycerol phosphate) [MESH:C037391] | (0|0) |
(0|0|0) |
| - 1: | poly(oligo)(3-deoxyglycero-galacto-nonulosonate) [MESH:C077653] | (0|0) |
(0|0|0) |
| - 1: | poly-N-acetyllactosamine [MESH:C037199] | (0|0) |
(0|0|0) |
| - 1: | polyactin B [MESH:C420602] | (0|0) |
(0|0|0) |
| - 1: | polyguluronate sulfate [MESH:C528993] | (0|0) |
(0|0|0) |
| - 1: | polylactosamine [MESH:C066929] | (0|0) |
(0|0|0) |
| - 1: | polyribitol phosphate [MESH:C008984] | (0|0) |
(0|0|0) |
| - 1: | polyribose-ribitol phosphate-diphtheria toxoid conjugate [MESH:C055754] | (0|0) |
(0|0|0) |
| - 1: | polysaccharide DAEB [MESH:C540249] | (0|0) |
(0|0|0) |
| - 1: | polysaccharide EA6 [MESH:C037587] | (0|0) |
(0|0|0) |
| - 1: | polysaccharide GL-BIII [MESH:C090690] | (0|0) |
(0|0|0) |
| - 1: | polysaccharide MDG-1 [MESH:C517472] | (0|0) |
(0|0|0) |
| - 1: | polysaccharide NRP-1 [MESH:C056318] | (0|0) |
(0|0|0) |
| - 1: | polysaccharide P-1 [MESH:C103233] | (0|0) |
(0|0|0) |
| - 1: | polysaccharide RG4-1 [MESH:C560687] | (0|0) |
(0|0|0) |
| - 1: | polysaccharide S3 [MESH:C008986] | (0|0) |
(0|0|0) |
| - 1: | polysaccharide S8 [MESH:C008987] | (0|0) |
(0|0|0) |
| - 1: | polysaccharide b, Bletilla striata [MESH:C000591471] | (0|0) |
(0|0|0) |
| - 1: | protein-bound polysaccharide K, Basidiomycetes [MESH:C494124] | (0|0) |
(0|0|0) |
| - 1: | protuberic acid [MESH:C040159] | (0|0) |
(0|0|0) |
| - 1: | prunellin [MESH:C061211] | (0|0) |
(0|0|0) |
| - 1: | pustulan [MESH:C002076] | (0|0) |
(0|0|0) |
| - 1: | quinquefolan A [MESH:C053589] | (0|0) |
(0|0|0) |
| - 1: | quinquefolan B [MESH:C053590] | (0|0) |
(0|0|0) |
| - 1: | quinquefolan C [MESH:C053591] | (0|0) |
(0|0|0) |
| - 1: | reptimed [MESH:C407503] | (0|0) |
(0|0|0) |
| - 1: | rhamnogalactofuranan [MESH:C587586] | (0|0) |
(0|0|0) |
| - 1: | rodexman [MESH:C048935] | (0|0) |
(0|0|0) |
| - 1: | rosacelose [MESH:C438304] | (0|0) |
(0|0|0) |
| - 1: | sacran [MESH:C571099] | (0|0) |
(0|0|0) |
| - 1: | san ch'i [MESH:C011543] | (0|0) |
(0|0|0) |
| - 1: | saposhnikovan C [MESH:C063350] | (0|0) |
(0|0|0) |
| - 1: | self-induced endogenous elicitor [MESH:C096231] | (0|0) |
(0|0|0) |
| - 1: | senegin II [MESH:C115099] | (0|0) |
(0|0|0) |
| - 1: | sialylfucosyllactosaminoglycan [MESH:C042476] | (0|0) |
(0|0|0) |
| - 1: | sodium spirulan [MESH:C465061] | (0|0) |
(0|0|0) |
| - 1: | spirulan [MESH:C102617] | (0|0) |
(0|0|0) |
| - 1: | statolon [MESH:C100186] | (0|0) |
(0|0|0) |
| - 1: | sulfated colominic acid [MESH:C463021] | (0|0) |
(0|0|0) |
| - 1: | sulfated polymannuroguluronate [MESH:C489185] | (0|0) |
(0|0|0) |
| - 1: | tagetan [MESH:C047613] | (0|0) |
(0|0|0) |
| - 1: | talaron [MESH:C009945] | (0|0) |
(0|0|0) |
| - 1: | tetravalent sialyl Lewis x saccharide [MESH:C107226] | (0|0) |
(0|0|0) |
| - 1: | thamnolan [MESH:C402834] | (0|0) |
(0|0|0) |
| - 1: | tochibanan B [MESH:C062852] | (0|0) |
(0|0|0) |
| - 1: | tremellan [MESH:C502294] | (0|0) |
(0|0|0) |
| - 1: | trichosaccharide [MESH:C090244] | (0|0) |
(0|0|0) |
| - 1: | tricothecium polysaccharide [MESH:C033609] | (0|0) |
(0|0|0) |
| - 1: | ukonan A [MESH:C076709] | (0|0) |
(0|0|0) |
| - 1: | ukonan C [MESH:C082977] | (0|0) |
(0|0|0) |
| - 1: | ulvan [MESH:C571831] | (0|0) |
(0|0|0) |
| - 1: | uronofucan [MESH:C078623] | (0|0) |
(0|0|0) |
| - 1: | xanthouronan [MESH:C000602707] | (0|0) |
(0|0|0) |
| - 1: | zenoderm [MESH:C079670] | (0|0) |
(0|0|0) |
| - 1: | zosterin [MESH:C070927] | (0|0) |
(0|0|0) |
Jump to [ Top · Hierarchy ]
Superfamily( show details)
Highlighted in gray are those with FDR_all>0.001
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Interleukin 8-like chemokines | 0 | DIRECT |
| Nitric oxide (NO) synthase oxygenase domain | 0 | DIRECT |
| Indolic compounds 2,3-dioxygenase-like | 0 | DIRECT |
| Mitochondrial cytochrome c oxidase subunit VIIa | 0 | DIRECT |
| DEATH domain | 0 | DIRECT |
| Ribosomal protein S18 | 0 | DIRECT |
| 4-helical cytokines | 0.00000000000005447 | DIRECT |
| Toll/Interleukin receptor TIR domain | 0.0000000000004608 | DIRECT |
| Cytokine | 0.000000000001663 | DIRECT |
| Caspase-like | 0.00000002016 | DIRECT |
| TNF-like | 0.0000001906 | DIRECT |
| Cystine-knot cytokines | 0.0000003426 | DIRECT |
| p53-like transcription factors | 0.0000003632 | DIRECT |
| PGBD-like | 0.0000006967 | DIRECT |
| Cytochrome P450 | 0.0000008147 | DIRECT |
| STAT | 0.000002044 | DIRECT |
| Transcription factor STAT-4 N-domain | 0.000002044 | DIRECT |
| Hemopexin-like domain | 0.00005831 | DIRECT |
| Kringle-like | 0.00007582 | DIRECT |
| Ferredoxin reductase-like, C-terminal NADP-linked domain | 0.00009848 | DIRECT |
| Riboflavin synthase domain-like | 0.00009848 | DIRECT |
| Flavoproteins | 0.0001033 | DIRECT |
| TNF receptor-like | 0.0001052 | DIRECT |
| C-type lectin-like | 0.0002355 | DIRECT |
| Serpins | 0.0007838 | DIRECT |
| Class II aaRS and biotin synthetases | 0.002677 | INHERITED FROM: Polysaccharides, Bacterial || Lipopolysaccharides |
| Bcl-2 inhibitors of programmed cell death | 0.003036 | INHERITED FROM: Polysaccharides, Bacterial |
| Nuclear receptor ligand-binding domain | 0.003822 | INHERITED FROM: Oligosaccharides |
| 2Fe-2S ferredoxin-like | 0.004046 | INHERITED FROM: Polysaccharides, Bacterial |
| 4Fe-4S ferredoxins | 0.004046 | INHERITED FROM: Polysaccharides, Bacterial || Lipopolysaccharides |
| Protein kinase-like (PK-like) | 0.004094 | INHERITED FROM: Cyclodextrins || beta-Cyclodextrins |
| GLA-domain | 0.007531 | INHERITED FROM: Heparin |
| Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.007531 | INHERITED FROM: Polysaccharides, Bacterial |
| Heat shock protein 70kD (HSP70), peptide-binding domain | 0.007531 | INHERITED FROM: Polysaccharides, Bacterial |
| Immunoglobulin | 0.02449 | INHERITED FROM: glucuronoxylomannan |
| TIMP-like | 0.0495 | INHERITED FROM: Chondroitin Sulfates || lipopolysaccharide, E. coli O26-B6 || Chondroitin |
| Metalloproteases ("zincins"), catalytic domain | 0.08581 | INHERITED FROM: fucoidan |
| E set domains | 0.4005 | INHERITED FROM: fucoidan |
| N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 0.4258 | INHERITED FROM: Heparin |
| Glucocorticoid receptor-like (DNA-binding domain) | 0.4735 | INHERITED FROM: Oligosaccharides |
| Cysteine proteinases | 0.6391 | INHERITED FROM: Chondroitin Sulfates || Chondroitin |
LINKTO: Domain2BO Download and Domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Family( show details)
Highlighted in gray are those with FDR_all>0.001
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Interleukin 8-like chemokines | 0 | DIRECT |
| Mitochondrial cytochrome c oxidase subunit VIIa | 0 | DIRECT |
| Nitric oxide (NO) synthase oxygenase domain | 0 | DIRECT |
| Ribosomal protein S18 | 0 | DIRECT |
| Toll/Interleukin receptor TIR domain | 0.000000000001175 | DIRECT |
| Interleukin-1 (IL-1) | 0.00000000002276 | DIRECT |
| Short-chain cytokines | 0.0000000004632 | DIRECT |
| Caspase catalytic domain | 0.00000003737 | DIRECT |
| TNF-like | 0.0000002181 | DIRECT |
| MMP N-terminal domain | 0.000001009 | DIRECT |
| STAT | 0.000002252 | DIRECT |
| Transcription factor STAT-4 N-domain | 0.000002252 | DIRECT |
| STAT DNA-binding domain | 0.000002252 | DIRECT |
| Cytochrome P450 | 0.000007169 | DIRECT |
| Matrix metalloproteases, catalytic domain | 0.000009006 | DIRECT |
| Rel/Dorsal transcription factors, DNA-binding domain | 0.00001513 | DIRECT |
| Transforming growth factor (TGF)-beta | 0.0000487 | DIRECT |
| Fibroblast growth factors (FGF) | 0.00005325 | DIRECT |
| Hemopexin-like domain | 0.00008034 | DIRECT |
| TNF receptor-like | 0.0001326 | DIRECT |
| NADPH-cytochrome p450 reductase FAD-binding domain-like | 0.0001413 | DIRECT |
| NADPH-cytochrome p450 reductase-like | 0.0001413 | DIRECT |
| DEATH domain, DD | 0.0001896 | DIRECT |
| Cytochrome p450 reductase N-terminal domain-like | 0.0001921 | DIRECT |
| C-type lectin domain | 0.0003159 | DIRECT |
| NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain | 0.0003781 | DIRECT |
| Long-chain cytokines | 0.0008742 | DIRECT |
| Fibronectin type II module | 0.0008742 | DIRECT |
| DEATH effector domain, DED | 0.001055 | INHERITED FROM: Polysaccharides, Bacterial || Hyaluronic Acid || Glycosaminoglycans || Lipopolysaccharides |
| Tissue inhibitor of metalloproteinases, TIMP | 0.001055 | INHERITED FROM: Polysaccharides, Bacterial || lipopolysaccharide, E. coli O26-B6 || Lipopolysaccharides |
| Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain | 0.001631 | INHERITED FROM: Polysaccharides, Bacterial || Lipopolysaccharides |
| Class I aminoacyl-tRNA synthetases (RS), catalytic domain | 0.002427 | INHERITED FROM: Polysaccharides, Bacterial || Lipopolysaccharides |
| Bcl-2 inhibitors of programmed cell death | 0.003411 | INHERITED FROM: Polysaccharides, Bacterial |
| Kringle modules | 0.003411 | INHERITED FROM: Glycosaminoglycans |
| Caspase recruitment domain, CARD | 0.003882 | INHERITED FROM: Polysaccharides, Bacterial || Lipopolysaccharides |
| Interleukin 17F, IL-17F | 0.004151 | INHERITED FROM: Polysaccharides, Bacterial || Lipopolysaccharides |
| Nuclear receptor | 0.00422 | INHERITED FROM: Oligosaccharides |
| Nuclear receptor ligand-binding domain | 0.005307 | INHERITED FROM: Oligosaccharides |
| Protein kinases, catalytic subunit | 0.005719 | INHERITED FROM: Cyclodextrins || beta-Cyclodextrins |
| Papain-like | 0.005778 | INHERITED FROM: Chondroitin Sulfates || Chondroitin || Glycosaminoglycans |
| Interferon regulatory factor | 0.008124 | INHERITED FROM: Polysaccharides, Bacterial || Lipopolysaccharides |
| Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.008124 | INHERITED FROM: Polysaccharides, Bacterial |
| GLA-domain | 0.008443 | INHERITED FROM: Heparin |
| C2 set domains | 0.01912 | INHERITED FROM: lipopolysaccharide, E coli O55-B5 |
| EGF-type module | 0.05728 | INHERITED FROM: Oligosaccharides |
| Proteasome subunits | 0.1928 | INHERITED FROM: Glycosaminoglycans || Heparin |
| V set domains (antibody variable domain-like) | 0.7721 | INHERITED FROM: glucuronoxylomannan |
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Interleukin 8-like chemokines | 0 | Direct |
| Mitochondrial cytochrome c oxidase subunit VIIa | 0 | Direct |
| Nitric oxide (NO) synthase oxygenase domain | 0 | Direct |
| Ribosomal protein S18 | 0 | Direct |
| Toll/Interleukin receptor TIR domain | 0.000000000001175 | Direct |
| Interleukin-1 (IL-1) | 0.00000000002276 | Direct |
| Short-chain cytokines | 0.0000000004632 | Direct |
| Caspase catalytic domain | 0.00000003737 | Direct |
| TNF-like | 0.0000002181 | Direct |
| MMP N-terminal domain | 0.000001009 | Direct |
| STAT | 0.000002252 | Direct |
| Transcription factor STAT-4 N-domain | 0.000002252 | Direct |
| STAT DNA-binding domain | 0.000002252 | Direct |
| Cytochrome P450 | 0.000007169 | Direct |
| Matrix metalloproteases, catalytic domain | 0.000009006 | Direct |
| Rel/Dorsal transcription factors, DNA-binding domain | 0.00001513 | Direct |
| Transforming growth factor (TGF)-beta | 0.0000487 | Direct |
| Fibroblast growth factors (FGF) | 0.00005325 | Direct |
| Hemopexin-like domain | 0.00008034 | Direct |
| TNF receptor-like | 0.0001326 | Direct |
| NADPH-cytochrome p450 reductase FAD-binding domain-like | 0.0001413 | Direct |
| NADPH-cytochrome p450 reductase-like | 0.0001413 | Direct |
| DEATH domain, DD | 0.0001896 | Direct |
| Cytochrome p450 reductase N-terminal domain-like | 0.0001921 | Direct |
| C-type lectin domain | 0.0003159 | Direct |
| NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain | 0.0003781 | Direct |
| Long-chain cytokines | 0.0008742 | Direct |
| Fibronectin type II module | 0.0008742 | Direct |
| DEATH effector domain, DED | 0.001055 | Inherited |
| Tissue inhibitor of metalloproteinases, TIMP | 0.001055 | Inherited |
| Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain | 0.001631 | Inherited |
| Class I aminoacyl-tRNA synthetases (RS), catalytic domain | 0.002427 | Inherited |
| Bcl-2 inhibitors of programmed cell death | 0.003411 | Inherited |
| Kringle modules | 0.003411 | Inherited |
| Caspase recruitment domain, CARD | 0.003882 | Inherited |
| Interleukin 17F, IL-17F | 0.004151 | Inherited |
| Nuclear receptor | 0.00422 | Inherited |
| Nuclear receptor ligand-binding domain | 0.005307 | Inherited |
| Protein kinases, catalytic subunit | 0.005719 | Inherited |
| Papain-like | 0.005778 | Inherited |
| Interferon regulatory factor | 0.008124 | Inherited |
| Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.008124 | Inherited |
| GLA-domain | 0.008443 | Inherited |
| C2 set domains | 0.01912 | Inherited |
| EGF-type module | 0.05728 | Inherited |
| Proteasome subunits | 0.1928 | Inherited |
| V set domains (antibody variable domain-like) | 0.7721 | Inherited |
LINKTO: Domain2BO Download and Domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Single)( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Single) |
FDR (all) |
Annotation (direct or inherited) |
| Nitric oxide (NO) synthase oxygenase domain | 0 | DIRECT |
| Ribosomal protein S18 | 0 | DIRECT |
| Indolic compounds 2,3-dioxygenase-like | 0 | DIRECT |
| Interleukin 8-like chemokines | 0 | DIRECT |
| DEATH domain | 0 | DIRECT |
| Mitochondrial cytochrome c oxidase subunit VIIa | 0 | DIRECT |
| 4-helical cytokines | 0.00000000000002113 | DIRECT |
| Toll/Interleukin receptor TIR domain | 0.0000000000001799 | DIRECT |
| Cytokine | 0.0000000000006521 | DIRECT |
| Caspase-like | 0.000000008581 | DIRECT |
| TNF-like | 0.00000008441 | DIRECT |
| Cystine-knot cytokines | 0.0000001536 | DIRECT |
| p53-like transcription factors | 0.0000001631 | DIRECT |
| PGBD-like | 0.0000003179 | DIRECT |
| Cytochrome P450 | 0.0000003733 | DIRECT |
| STAT | 0.0000009585 | DIRECT |
| Transcription factor STAT-4 N-domain | 0.0000009585 | DIRECT |
| Hemopexin-like domain | 0.00003053 | DIRECT |
| Kringle-like | 0.00004016 | DIRECT |
| Riboflavin synthase domain-like | 0.00005277 | DIRECT |
| Ferredoxin reductase-like, C-terminal NADP-linked domain | 0.00005277 | DIRECT |
| Flavoproteins | 0.00005542 | DIRECT |
| TNF receptor-like | 0.00005651 | DIRECT |
| C-type lectin-like | 0.000131 | DIRECT |
| Serpins | 0.0004621 | DIRECT |
| Nuclear receptor coactivator interlocking domain | 0.0006272 | DIRECT |
| Class II aaRS and biotin synthetases | 0.00168 | INHERITED FROM: Lipopolysaccharides || Polysaccharides, Bacterial |
| Bcl-2 inhibitors of programmed cell death | 0.001919 | INHERITED FROM: Lipopolysaccharides || Polysaccharides, Bacterial |
| Nuclear receptor ligand-binding domain | 0.002442 | INHERITED FROM: Oligosaccharides |
| 4Fe-4S ferredoxins | 0.002596 | INHERITED FROM: Lipopolysaccharides || Polysaccharides, Bacterial |
| 2Fe-2S ferredoxin-like | 0.002596 | INHERITED FROM: Polysaccharides, Bacterial |
| Protein kinase-like (PK-like) | 0.002629 | INHERITED FROM: Cyclodextrins || beta-Cyclodextrins |
| Leucine zipper domain | 0.003867 | INHERITED FROM: Heparin || Lipopolysaccharides |
| Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.004996 | INHERITED FROM: Lipopolysaccharides || Polysaccharides, Bacterial |
| GLA-domain | 0.004996 | INHERITED FROM: Heparin |
| Heat shock protein 70kD (HSP70), peptide-binding domain | 0.004996 | INHERITED FROM: Lipopolysaccharides || Polysaccharides, Bacterial |
| Immunoglobulin | 0.0174 | INHERITED FROM: glucuronoxylomannan |
| TIMP-like | 0.03663 | INHERITED FROM: Chondroitin Sulfates || lipopolysaccharide, E. coli O26-B6 || Chondroitin |
| Metalloproteases ("zincins"), catalytic domain | 0.06536 | INHERITED FROM: fucoidan |
| EGF/Laminin | 0.2501 | INHERITED FROM: Glycosaminoglycans |
| E set domains | 0.3393 | INHERITED FROM: fucoidan |
| N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 0.3629 | INHERITED FROM: Heparin |
| Glucocorticoid receptor-like (DNA-binding domain) | 0.4076 | INHERITED FROM: Oligosaccharides |
| Cysteine proteinases | 0.5675 | INHERITED FROM: Chondroitin Sulfates || Chondroitin |
| Growth factor receptor domain | 0.7358 | INHERITED FROM: rosavin |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Duplex) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
47986,47986
47986 - DEATH domain
47986 - DEATH domain | 0.000000024 | DIRECT |
47090,55486
47090 - PGBD-like
55486 - Metalloproteases ("zincins"), catalytic domain | 0.0000003179 | DIRECT |
47986,52129
47986 - DEATH domain
52129 - Caspase-like | 0.0000008406 | DIRECT |
48092,47655
48092 - Transcription factor STAT-4 N-domain
47655 - STAT | 0.0000009585 | DIRECT |
49417,55550
49417 - p53-like transcription factors
55550 - SH2 domain | 0.0000009585 | DIRECT |
47655,49417
47655 - STAT
49417 - p53-like transcription factors | 0.0000009585 | DIRECT |
49417,81296
49417 - p53-like transcription factors
81296 - E set domains | 0.000006689 | DIRECT |
57586,57586
57586 - TNF receptor-like
57586 - TNF receptor-like | 0.00001266 | DIRECT |
57440,57440
57440 - Kringle-like
57440 - Kringle-like | 0.00002633 | DIRECT |
57924,57924
57924 - Inhibitor of apoptosis (IAP) repeat
57924 - Inhibitor of apoptosis (IAP) repeat | 0.00007438 | DIRECT |
55486,50923
55486 - Metalloproteases ("zincins"), catalytic domain
50923 - Hemopexin-like domain | 0.0003296 | DIRECT |
57440,50494
57440 - Kringle-like
50494 - Trypsin-like serine proteases | 0.0004824 | DIRECT |
56436,57535
56436 - C-type lectin-like
57535 - Complement control module/SCR domain | 0.0009782 | DIRECT |
49265,49265
49265 - Fibronectin type III
49265 - Fibronectin type III | 0.001857 | INHERITED FROM: Lipopolysaccharides |
100920,100934
100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.002596 | INHERITED FROM: Lipopolysaccharides || Polysaccharides, Bacterial |
57716,48508
57716 - Glucocorticoid receptor-like (DNA-binding domain)
48508 - Nuclear receptor ligand-binding domain | 0.003262 | INHERITED FROM: Oligosaccharides |
53067,100920
53067 - Actin-like ATPase domain
100920 - Heat shock protein 70kD (HSP70), peptide-binding domain | 0.004996 | INHERITED FROM: Lipopolysaccharides || Polysaccharides, Bacterial |
57889,57889
57889 - Cysteine-rich domain
57889 - Cysteine-rich domain | 0.02972 | INHERITED FROM: Glucans |
57535,57535
57535 - Complement control module/SCR domain
57535 - Complement control module/SCR domain | 0.1904 | INHERITED FROM: Heparin |
57184,57184
57184 - Growth factor receptor domain
57184 - Growth factor receptor domain | 0.2253 | INHERITED FROM: Oligosaccharides || rosavin || Disaccharides |
57196,57196
57196 - EGF/Laminin
57196 - EGF/Laminin | 0.7258 | INHERITED FROM: rosavin |
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
47986,47986
47986 - DEATH domain
47986 - DEATH domain | 0.000000024 | Direct |
47090,55486
47090 - PGBD-like
55486 - Metalloproteases ("zincins"), catalytic domain | 0.0000003179 | Direct |
47986,52129
47986 - DEATH domain
52129 - Caspase-like | 0.0000008406 | Direct |
48092,47655
48092 - Transcription factor STAT-4 N-domain
47655 - STAT | 0.0000009585 | Direct |
49417,55550
49417 - p53-like transcription factors
55550 - SH2 domain | 0.0000009585 | Direct |
47655,49417
47655 - STAT
49417 - p53-like transcription factors | 0.0000009585 | Direct |
49417,81296
49417 - p53-like transcription factors
81296 - E set domains | 0.000006689 | Direct |
57586,57586
57586 - TNF receptor-like
57586 - TNF receptor-like | 0.00001266 | Direct |
57440,57440
57440 - Kringle-like
57440 - Kringle-like | 0.00002633 | Direct |
57924,57924
57924 - Inhibitor of apoptosis (IAP) repeat
57924 - Inhibitor of apoptosis (IAP) repeat | 0.00007438 | Direct |
55486,50923
55486 - Metalloproteases ("zincins"), catalytic domain
50923 - Hemopexin-like domain | 0.0003296 | Direct |
57440,50494
57440 - Kringle-like
50494 - Trypsin-like serine proteases | 0.0004824 | Direct |
56436,57535
56436 - C-type lectin-like
57535 - Complement control module/SCR domain | 0.0009782 | Direct |
49265,49265
49265 - Fibronectin type III
49265 - Fibronectin type III | 0.001857 | Inherited |
100920,100934
100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.002596 | Inherited |
57716,48508
57716 - Glucocorticoid receptor-like (DNA-binding domain)
48508 - Nuclear receptor ligand-binding domain | 0.003262 | Inherited |
53067,100920
53067 - Actin-like ATPase domain
100920 - Heat shock protein 70kD (HSP70), peptide-binding domain | 0.004996 | Inherited |
57889,57889
57889 - Cysteine-rich domain
57889 - Cysteine-rich domain | 0.02972 | Inherited |
57535,57535
57535 - Complement control module/SCR domain
57535 - Complement control module/SCR domain | 0.1904 | Inherited |
57184,57184
57184 - Growth factor receptor domain
57184 - Growth factor receptor domain | 0.2253 | Inherited |
57196,57196
57196 - EGF/Laminin
57196 - EGF/Laminin | 0.7258 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Triple) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
47986,47986,52129
47986 - DEATH domain
47986 - DEATH domain
52129 - Caspase-like | 0 | DIRECT |
47655,49417,55550
47655 - STAT
49417 - p53-like transcription factors
55550 - SH2 domain | 0.0000009585 | DIRECT |
48092,47655,49417
48092 - Transcription factor STAT-4 N-domain
47655 - STAT
49417 - p53-like transcription factors | 0.0000009585 | DIRECT |
47090,55486,50923
47090 - PGBD-like
55486 - Metalloproteases ("zincins"), catalytic domain
50923 - Hemopexin-like domain | 0.0001379 | DIRECT |
57924,57924,57924
57924 - Inhibitor of apoptosis (IAP) repeat
57924 - Inhibitor of apoptosis (IAP) repeat
57924 - Inhibitor of apoptosis (IAP) repeat | 0.0006272 | DIRECT |
53067,100920,100934
53067 - Actin-like ATPase domain
100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.002596 | INHERITED FROM: Lipopolysaccharides || Polysaccharides, Bacterial |
53067,53067,100920
53067 - Actin-like ATPase domain
53067 - Actin-like ATPase domain
100920 - Heat shock protein 70kD (HSP70), peptide-binding domain | 0.004996 | INHERITED FROM: Lipopolysaccharides || Polysaccharides, Bacterial |
57586,57586,57586
57586 - TNF receptor-like
57586 - TNF receptor-like
57586 - TNF receptor-like | 0.00653 | INHERITED FROM: lipopolysaccharide, E. coli O26-B6 |
57440,57440,57440
57440 - Kringle-like
57440 - Kringle-like
57440 - Kringle-like | 0.00653 | INHERITED FROM: Heparin || Glycosaminoglycans |
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
47986,47986,52129
47986 - DEATH domain
47986 - DEATH domain
52129 - Caspase-like | 0 | Direct |
47655,49417,55550
47655 - STAT
49417 - p53-like transcription factors
55550 - SH2 domain | 0.0000009585 | Direct |
48092,47655,49417
48092 - Transcription factor STAT-4 N-domain
47655 - STAT
49417 - p53-like transcription factors | 0.0000009585 | Direct |
47090,55486,50923
47090 - PGBD-like
55486 - Metalloproteases ("zincins"), catalytic domain
50923 - Hemopexin-like domain | 0.0001379 | Direct |
57924,57924,57924
57924 - Inhibitor of apoptosis (IAP) repeat
57924 - Inhibitor of apoptosis (IAP) repeat
57924 - Inhibitor of apoptosis (IAP) repeat | 0.0006272 | Direct |
53067,100920,100934
53067 - Actin-like ATPase domain
100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.002596 | Inherited |
53067,53067,100920
53067 - Actin-like ATPase domain
53067 - Actin-like ATPase domain
100920 - Heat shock protein 70kD (HSP70), peptide-binding domain | 0.004996 | Inherited |
57586,57586,57586
57586 - TNF receptor-like
57586 - TNF receptor-like
57586 - TNF receptor-like | 0.00653 | Inherited |
57440,57440,57440
57440 - Kringle-like
57440 - Kringle-like
57440 - Kringle-like | 0.00653 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Plot distribution on species Tree Of Life (sTOL) for Superfamily and/or Family domains annotated by this CC term
 |
Plot tree as:
| |
Download Newick format tree:
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( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domain
architecture data for all genomes in SUPERFAMILY. The PAUP
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Plot distribution on species Tree Of Life (sTOL) for single supra-domains annotated by this CC term
|
Plot tree as:
| |
Download Newick format tree:
| |
Browsing in TREE OF LIFE:
|
( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
|
|
> BO Hierarchy > Polysaccharides
