SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_005062089.1.66865 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_005062089.1.66865
Domain Number 1 Region: 17-317
Classification Level Classification E-value
Superfamily WD40 repeat-like 1.59e-34
Family WD40-repeat 0.0075
Further Details:      
 
Domain Number 2 Region: 244-308,335-406,482-584
Classification Level Classification E-value
Superfamily DPP6 N-terminal domain-like 0.000000000118
Family DPP6 N-terminal domain-like 0.044
Further Details:      
 
Domain Number 3 Region: 917-1116
Classification Level Classification E-value
Superfamily ARM repeat 0.00000552
Family Clathrin heavy-chain linker domain 0.051
Further Details:      
 
Weak hits

Sequence:  XP_005062089.1.66865
Domain Number - Region: 810-937
Classification Level Classification E-value
Superfamily TPR-like 0.00885
Family Tetratricopeptide repeat (TPR) 0.028
Further Details:      
 
Domain Number - Region: 619-681
Classification Level Classification E-value
Superfamily Acyl-CoA dehydrogenase C-terminal domain-like 0.0122
Family Medium chain acyl-CoA dehydrogenase-like, C-terminal domain 0.02
Further Details:      
 
Domain Number - Region: 1136-1245
Classification Level Classification E-value
Superfamily TPR-like 0.0645
Family Tetratricopeptide repeat (TPR) 0.059
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_005062089.1.66865
Sequence length 1748
Comment PREDICTED: intraflagellar transport protein 172 homolog [Ficedula albicollis]; AA=GCF_000247815.1; RF=representative genome; TAX=59894; STAX=59894; NAME=Ficedula albicollis; AL=Chromosome; RT=Major
Sequence
MQLRHVRTLLAPQDGTARVTCMAWSASSARFAVCTAERVVLLYDEQGERRDKFSTKPADA
KYGRKSYVVKGMAFSPDSTKLAIGQTDNIVYVYRIGEEWGDKKVICNKFIQTSAVTCLLW
PAENVIVFGLAEGKVRLANTKNNKSSTIYGTDSYVVSLTSNVSGRGILSGHADGTIVRFF
FDDEGSGESQGKLAVHPCPPYALAWASNSIVAAGCDKKIVAYGKEGSVIQTFDYSRDSSE
KEFTTATTSPSGQSIVIGSYDRLRVLNWSPRRSAWEEGKAKEIAHLYTITALAWKRDGSR
ICAGTLCGGVEQFDCCLRRTIYKNKFEITYVGPSQAIVKNLSTGTRLVLKSQYGYEIDEV
KILGKDRYLVAHTSDTLLLGDISSNKLSEVAWNGSGGNEKFFFDNENVCMIFNAGELTLV
EYGSNDILGSVRTEFVNPHLVSVRINERQQRGVDENKKLAYLIDIKTIATVDLVGGYNAG
MISHDSKIDWLELNETGHKLLFRDKKMRLQLYDIESSTKTSILNYCSYVQWVPGSDVVVA
QNRNSLCIWYNIDAPERVTMFPLKGDIIGLERSDGKTEVIVSEGVNTVSYTLDEGLIEFG
TAIDDGDYHRATAFLETLEMSTETEAMWKTLSRLALEARQLHIAERCFAALGNMAKARFL
HETNVIADQAAQEHGGDGTEHYLVRARLAMLDKNYKLAEMIFLEQNATEEAMDMYQELHM
WDECIVVARAKGHPMLEKLRRGYYQWLLDTQQEEKAGEVQEGQGDYLAAISLYLRAGLPA
KAARLAMGRDELLTSADVIDRISTALIRGELYEQAGDLFERVGNPRKALECYAKGSAFLK
AVELARLAFPAEVVKLEEAWGDHLVQQKQLDAAINHYIEARCSVKAIEAALGARQWKKAV
YILDLQDRQTAAKYYLKIAQHYAALQEYQVAEELYTKGGQTKDAIDMYTQAGLWEQAHKL
ALKCMSQEDVSVLYITQAQEMERQGKYKEAERLYITVNEPDLAITMYKKCKMYDEMVCLV
AKYHKDLLGDTHLHLGKELEAEGRLQEAEYHYLEAKDWKSTVNMYRVNDMWEEAYRVAKA
HGGANSHKHVAYLWAKSLGGEAAVKLLSKFGLLEMAIDHATDTGVFEFAFELARLSMKQK
MPDIHLKYAMFLEDEGKFEEAEGEFIKAGKPKEAVLMFVHNQNWDAAQRVAEAHDPGSVA
DVLVGQAQFAFEQREFQKAEAFLLRAQRPELAIKYYKEAGMWSEALRICKEYLPSRLGEL
QEECGREAGKKGSSGAEGLLEQAREWEQSGEYARAVDCYLKVRDPSNSVLVEKCLLKAAE
LAVKFLDQSQSMEVTRTVAPQLVAMKKYSMAAELYLNLDLVREAIDAFIEGEEWSKAKHV
AKEFDPRSEEYVDQRYKEYLKKQGKVDSLVGIDVMAALDIYAKQEQWEKCLEVAAKQGYQ
VLHKYVALHATQLICGGSWDRALRLYVQHGAPASPQNFNIYKRLFVEMVNAAGLNCAEAY
SSWADLRDMLLSLCENLVKSSEASTEAHEEFERMLLISHYCATRSAAQGLKQLDTVAAQL
SISLLRHTDLLPADKAFYEAGMAAKAVSWENMAFVLLNRFLDLSDAIEEGNLDSLDHSDF
QGTDIPFEVPLPAHQHVPEEQREEARDWVLTMSMDQQLVQALPQDERGAFEASLVAAGTG
ERSLPCLLTGYPVLRNKIELRPGREVKKDVWYKFVMAVKTSHSPAGQDVIEFLRRWCGGL
PSTSLSFQ
Download sequence
Identical sequences U3K9N2
XP_005062089.1.66865 ENSFALP00000011736

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]