SUPERFAMILY 1.75 HMM library and genome assignments server

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Plant lipid-transfer and hydrophobic proteins family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin [ 47698]
Superfamily:   Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin [ 47699] (3)
Family:   Plant lipid-transfer and hydrophobic proteins [ 47700] (3)


Family statistics
Genomes (45) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 342 788 7
Proteins 332 779 7


Arabidopsis Plant Ontology (AP)

(
show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)androecium1Least InformativeInherited
Plant ANatomical entity (PAN)vascular leaf1Least InformativeInherited
Plant ANatomical entity (PAN)root1Least InformativeInherited
Plant ANatomical entity (PAN)microsporophyll1Least InformativeInherited
Plant ANatomical entity (PAN)portion of meristem tissue1Least InformativeInherited
Plant ANatomical entity (PAN)gynoecium1Least InformativeInherited
Plant ANatomical entity (PAN)stalk1Least InformativeInherited
Plant ANatomical entity (PAN)megasporophyll1Least InformativeInherited
Plant ANatomical entity (PAN)root tip0.0006523InformativeDirect
Plant ANatomical entity (PAN)vascular system0.001115InformativeInherited
Plant ANatomical entity (PAN)lateral root primordium0.0000002213Highly InformativeDirect
Plant ANatomical entity (PAN)lateral root0.0000004044Highly InformativeDirect
Plant ANatomical entity (PAN)filament0.000009772Highly InformativeDirect

Document: AP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Arabidopsis Plant Ontology (AP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 22 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Arabidopsis Plant Ontology (AP) · Internal database links ]