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Domain assignment for Pa_4_9120|chrm4_SC4|Putative from Podospora anserina

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Pa_4_9120|chrm4_SC4|Putative
Domain Number 1 Region: 538-628,684-800,833-915
Classification Level Classification E-value
Superfamily Cysteine proteinases 1.96e-24
Family Ubiquitin carboxyl-terminal hydrolase, UCH 0.023
Further Details:      
 
Domain Number 2 Region: 78-114,153-400
Classification Level Classification E-value
Superfamily WD40 repeat-like 1.19e-20
Family WD40-repeat 0.015
Further Details:      
 
Domain Number 3 Region: 952-1144
Classification Level Classification E-value
Superfamily Ribonuclease H-like 2.22e-18
Family DnaQ-like 3'-5' exonuclease 0.005
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Pa_4_9120|chrm4_SC4|Putative
Sequence length 1256
Comment PAB-dependent poly(A)-specific ribonuclease subunit PAN2
Sequence
MANYFSDWTPQVSRITYPVPMPNDFRHPTTHPSAHPHSHHGGLHQGVVGQGYGGGPPPPP
GIGGGGIVGGVGVVGLQPATALAFDPQAELLWAGDWKGRVASFANRELRRYTAFKIQIDP
TEGPVQQFLFHEKGVIVLGRRVVHMAMRRGPVLWNIRHEGMKDLRCMSFTSKGASEILVA
GWQDTMFVIDVVKGEVTKQVPAPHHYKIMKRGRYICAATETGRIDIVNPTTFKVEKEWQA
HQSYINDMDASGDYIVTCGGSYKQQGPGSSSRVPDPYVNVYDLRNMTSIQPMPFPPLAAY
VRLHPRMLTTTIVSSQQGQMHVVDIMNPNTTNIRYAHLQASINLFEIASSGRALVIADND
RNIALWGSPSDGIQFTNIGAPITFPEPEEPAPHVDWSVDAPLSTVGMPYYYGTMLFSAWP
ADIISDAGAPPPQVDPALLATLNKTEFGYFGPNKTGLRRNQIEDTRASKASNKLQAPKFL
SERARDGPVTDSHVDQETLAQDAAESLKPEPPPIYGTLEIKYSRFGVDDFDFGFFNKTKY
AGLENQIPNSYANSLLQVMNYTPLIRNMALQHVATSCVTDLCLLCELGFVFDMLQKADGL
TCHATNLFKTITGRSESQPLDLLEEDLHSHRVSSTTGGAQPGPAPHTRVQNLCRFLMDKT
TVEYQSIQPISTALERTLLKLPDPPSPKELTSKLLTTSAVVRINCTNCRTETARSGDAQV
IDLIYPPPRTAIRNARAPRTTFSQVLKMGVEKELGTKGWCGNCKRYQSLQLRKTVESVPA
VLTINTMIVQENRKLWATPGWLPEEIGVIVSGGQFFCYEGEDLRVHLQRGAHEITVYSLM
GMVVNIEHPPPQKPHLVAMVNVAHSEPTAPAESKWHLFNDFSVRRVSSAEALTFNAAWKL
PSVLMYQIKQANNKSNMEWKTRLDTSILYKDLGPPPPPQQQQQHSDEKKTYRLLDEATER
PGPGTIVGLDTEYVSLKDQEIQINSNGEKEMLRPMWLALGRVSVIRARGEREGEAFIDDW
ITIREPVHDYLTQYSGITAGDLDSRTSKHTLVTLKTAYRKIWTLLNLGVTFLGHGLRQDF
RVMNIHVPRAQVIDTAVIYHLSAWRRVLSLSVLSRVVLKQKIQQGQHDSVEDAQAALRLY
KKYQEYVDAGLWEREIEQIYLRCKAIGFNAKFEGSGDGIMGGGGMVKRTDTPPVGGAVGA
ADGVAGPTTPVRKAAVLGTAGSVGMVGSGGFGSGGGGGGGGTFTPTKEGSTGSPRR
Download sequence
Identical sequences Pa_4_9120|chrm4_SC4|Putative

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