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Worm Phenotype (WP): gametogenesis variant 
(show info)
Biomedical Ontology
Like Gene Ontology (GO), biomedical ontology such as phenotype ontology classifies and organizes gene-mutant/null phenotypic information from the very general at the top to more specific terms in the directed acyclic graph (DAG) by viewing an individual term as a node and its relations to parental terms (allowing for multiple parents) as directed edges. To navigate this hierarchy, we display all parental phenotypic terms to the current phenotypic term of interest ordered by their shortest distances to the current term. Also, only direct children phenotypic terms of the current phenotypic term are listed. Biomedical ontologies we have incorporated are as follows:
- Disease Ontology (DO) Ontology DO semantically integrates disease and medical vocabularies through extensive cross mapping of DO terms to MeSH, ICD, NCI’s thesaurus, SNOMED and OMIM.
- Human Phenotype (HP) Ontology HP captures phenotypic abnormalities that are described in OMIM, along with the corresponding disease-causing genes. It includes three complementary biological concepts: Mode_of_Inheritance (MI), ONset_and_clinical_course (ON), and Phenotypic_Abnormality (PA).
- Mouse Phenotype (MP) Ontology MP describes phenotypes of the mouse after a specific gene is genetically disrupted. Using it, Mouse Genome Informatics (MGI) provides high-coverate gene-level phenotypes for the mouse.
- Worm Phenotype (WP) Ontology WP classifies and organizes phenotype descriptions for C. elegans and other nematodes. Using it, WormBase provides primary resource for phenotype annotations for C. elegans.
- Yeast Phenotype (YP) Ontology Based on YP which is the major contributor to the ‘Ascomycete phenotype ontology’, Saccharomyces Genome Database (SGD) provides single mutant phenotypes for every gene in the yeast genome.
- Fly Phenotype (FP) Ontology FP refers to FlyBase controlled vocabulary. Specifically, a structured controlled vocabulary is used for the annotation of alleles (for their mutagen etc) in FlyBase.
- Fly Anatomy (FA) Ontology FA is a structured controlled vocabulary of the anatomy of Drosophila melanogaster, used for the description of phenotypes and where a gene is expressed.
- Zebrafish Anatomy (ZA) Ontology ZA displays anatomical terms of the zebrafish using standard anatomical nomenclature, together with affected genes.
- Xenopus Anatomy (XA) Ontology XA represents the lineage of tissues and the timing of development for frogs (Xenopus laevis and Xenopus tropicalis). It is used to annotate Xenopus gene expression patterns and mutant and morphant phenotypes.
- Arabidopsis Plant Ontology (AP) Ontology As a major contributor to Plant Ontology which describes plant anatomical and morphological structures (AN) and growth and developmental stages (DE), the Arabidopsis Information Resource (TAIR) provides arabidopsis plant ontology annotations for the model higher plant Arabidopsis thaliana.
- Enzyme Commission (EC) Ontology Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed.
- UniProtKB KeyWords (KW) Ontology Keywords in UniProtKB are controlled vocabulary, providing a summary of the entry content and are used to index UniProtKB/Swiss-Prot entries based on 10 categories (the category "Technical term" being excluded here). Each keyword is attributed manually to UniProtKB/Swiss-Prot entries and automatically to UniProtKB/TrEMBL entries (according to specific annotation rules).
- CTD Diseases (CD) Ontology CD is MEDIC disease vocabulary that is modified by CTD from the "Diseases" [C] branch of Medical Subject Headings (MeSH), combined with genetic disorders from the Online Mendelian Inheritance in OMIM database.
- CTD Chemicals (CC) Ontology CC is chemical vocabulary that is adapted by CTD from the "Chemicals and Drugs" category and Supplementary Concept Records of Medical Subject Headings (MeSH, a hierarchical vocabulary used to index articles for MEDLINE/PubMed).
Jump to [ Top · Hierarchy · Annotations ]
Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)
Jump to [ Top · Hierarchy ]
Family( show details)
Highlighted in gray are those with FDR_all>0.001
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| POU-specific domain | 0 | DIRECT |
| beta-sandwich domain of Sec23/24 | 0 | DIRECT |
| Helical domain of Sec23/24 | 0 | DIRECT |
| Smc hinge domain | 0 | DIRECT |
| C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0 | DIRECT |
| Zn-finger domain of Sec23/24 | 0 | DIRECT |
| Group II chaperonin (CCT, TRIC), intermediate domain | 0 | DIRECT |
| RNA-polymerase beta | 0 | DIRECT |
| 14-3-3 protein | 0 | DIRECT |
| Proteasome subunits | 0 | DIRECT |
| LEM domain | 0 | DIRECT |
| Trunk domain of Sec23/24 | 0 | DIRECT |
| Group II chaperonin (CCT, TRIC), ATPase domain | 0 | DIRECT |
| N-terminal domain of alpha and beta subunits of F1 ATP synthase | 0 | DIRECT |
| C-terminal, gelsolin-like domain of Sec23/24 | 0 | DIRECT |
| Group II chaperonin (CCT, TRIC), apical domain | 0.00000001856 | DIRECT |
| RecA protein-like (ATPase-domain) | 0.000008982 | DIRECT |
| Extended AAA-ATPase domain | 0.00002935 | DIRECT |
| Nucleosome core histones | 0.0001419 | DIRECT |
| Cdc48 domain 2-like | 0.0005227 | DIRECT |
| Anticodon-binding domain | 0.0005227 | DIRECT |
| Cdc48 N-terminal domain-like | 0.0005227 | DIRECT |
| BTB/POZ domain | 0.0006853 | DIRECT |
| Single strand DNA-binding domain, SSB | 0.001047 | INHERITED FROM: germ cell development variant |
| Sm motif of small nuclear ribonucleoproteins, SNRNP | 0.002198 | INHERITED FROM: pachytene progression during oogenesis variant || meiotic progression prophase variant || germ cell development variant || pachytene region organization variant || meiotic progression during oogenesis variant || no oocytes || chromosome condensation variant |
| F1F0 ATP synthase subunit C | 0.002216 | INHERITED FROM: germ cell differentiation variant || meiotic progression prophase variant || oogenesis variant || meiotic chromosome organization variant || diakinesis progression during oogenesis variant || oocytes lack nucleus || meiotic progression during oogenesis variant || meiosis variant || chromosome condensation variant |
| Translational machinery components | 0.002455 | INHERITED FROM: germ cell differentiation variant || pachytene progression during oogenesis variant || meiotic progression prophase variant || oogenesis variant || pachytene region organization variant || meiotic progression during oogenesis variant || diplotene progression during oogenesis variant |
| Skp1 dimerisation domain-like | 0.002954 | INHERITED FROM: germ cell differentiation variant || pachytene progression during oogenesis variant || meiotic progression prophase variant || univalent meiotic chromosomes || oogenesis variant || meiotic chromosome organization variant || X chromosome nondisjunction || germ cell development variant || meiotic progression during oogenesis variant || meiosis variant |
| Pumilio repeat | 0.008078 | INHERITED FROM: sperm excess || masculinization of germline || germ cell development variant || meiotic progression during oogenesis variant || no oocytes |
| Cyclin | 0.008078 | INHERITED FROM: no oocytes |
| WD40-repeat | 0.0172 | INHERITED FROM: germ cell development variant |
| EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 0.03172 | INHERITED FROM: pachytene progression during oogenesis variant || meiotic progression prophase variant || diplotene absent during oogenesis || pachytene region organization variant || meiotic progression during oogenesis variant || diplotene progression during oogenesis variant || oocyte number decreased |
| Elongation factors | 0.03192 | INHERITED FROM: pachytene progression during oogenesis variant || meiotic progression prophase variant || oogenesis variant || pachytene region organization variant || meiotic progression during oogenesis variant || diplotene progression during oogenesis variant |
| Cold shock DNA-binding domain-like | 0.0365 | INHERITED FROM: germ cell differentiation variant || pachytene progression during oogenesis variant || meiotic progression prophase variant || pachytene region organization variant || meiotic progression during oogenesis variant || diplotene progression during oogenesis variant || no oocytes || oocyte number decreased |
| Ubiquitin-related | 0.04573 | INHERITED FROM: no oocytes |
| DNA replication initiator (cdc21/cdc54) N-terminal domain | 0.05552 | INHERITED FROM: germ cell differentiation variant || no germ line || no differentiated gametes || germ cell development variant || no oocytes |
| Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain | 0.05893 | INHERITED FROM: germ cell differentiation variant || pachytene progression during oogenesis variant || meiotic progression prophase variant || germ cell development variant || diakinesis region organization variant |
| Retrovirus zinc finger-like domains | 0.06237 | INHERITED FROM: germline proliferation variant |
| Actin/HSP70 | 0.08077 | INHERITED FROM: germ cell development variant |
| RNA editing terminal uridyl transferase 2, RET2, domain 2 | 0.1039 | INHERITED FROM: germ cell development variant |
| L30e/L7ae ribosomal proteins | 0.1039 | INHERITED FROM: germ cell differentiation variant || pachytene progression during oogenesis variant || meiotic progression prophase variant || oogenesis variant || pachytene region organization variant || meiotic progression during oogenesis variant || meiosis variant || diplotene progression during oogenesis variant || diplotene region organization variant || oocyte number decreased |
| Clathrin adaptor core protein | 0.1039 | INHERITED FROM: meiotic progression prophase variant || oogenesis variant || meiotic progression during oogenesis variant || diplotene progression during oogenesis variant || diplotene region organization variant |
| Anticodon-binding domain of Class II aaRS | 0.1039 | INHERITED FROM: germ cell differentiation variant || germ cell development variant |
| SMAD domain | 0.1729 | INHERITED FROM: germline proliferation variant |
| Motor proteins | 0.225 | INHERITED FROM: passage through meiosis defective early emb || meiotic spindle defective || X chromosome nondisjunction || meiosis variant |
| Canonical RBD | 0.2275 | INHERITED FROM: tumorous germline || masculinization of germline || germline proliferation variant |
| Nitrogenase iron protein-like | 0.2776 | INHERITED FROM: diplotene progression during oogenesis variant || oocyte number decreased || chromosome condensation variant |
| Cullin homology domain | 0.2776 | INHERITED FROM: oogenesis variant |
| SMAD MH1 domain | 0.2776 | INHERITED FROM: germline proliferation variant |
| CCCH zinc finger | 0.2888 | INHERITED FROM: oocyte meiotic maturation variant |
| Class I aminoacyl-tRNA synthetases (RS), catalytic domain | 0.2888 | INHERITED FROM: pachytene progression during oogenesis variant || oocyte number decreased |
| Tetratricopeptide repeat (TPR) | 0.2888 | INHERITED FROM: meiosis metaphase to anaphase transition block |
| Histone lysine methyltransferases | 0.3281 | INHERITED FROM: fewer germ cells |
| Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.4879 | INHERITED FROM: pachytene progression during oogenesis variant || meiotic progression prophase variant || pachytene region organization variant || diplotene progression during oogenesis variant || oocyte number decreased |
| G proteins | 0.6486 | INHERITED FROM: oogenesis variant || inhibition of oocyte maturation variant || germ cell development variant || distal germline variant || multiple nuclei oocyte |
| Protein serine/threonine phosphatase | 0.8273 | INHERITED FROM: meiosis defective early emb |
| Protein kinases, catalytic subunit | 0.9931 | INHERITED FROM: pachytene arrested germline nuclei || synapsis defective |
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| POU-specific domain | 0 | Direct |
| beta-sandwich domain of Sec23/24 | 0 | Direct |
| Helical domain of Sec23/24 | 0 | Direct |
| Smc hinge domain | 0 | Direct |
| C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0 | Direct |
| Zn-finger domain of Sec23/24 | 0 | Direct |
| Group II chaperonin (CCT, TRIC), intermediate domain | 0 | Direct |
| RNA-polymerase beta | 0 | Direct |
| 14-3-3 protein | 0 | Direct |
| Proteasome subunits | 0 | Direct |
| LEM domain | 0 | Direct |
| Trunk domain of Sec23/24 | 0 | Direct |
| Group II chaperonin (CCT, TRIC), ATPase domain | 0 | Direct |
| N-terminal domain of alpha and beta subunits of F1 ATP synthase | 0 | Direct |
| C-terminal, gelsolin-like domain of Sec23/24 | 0 | Direct |
| Group II chaperonin (CCT, TRIC), apical domain | 0.00000001856 | Direct |
| RecA protein-like (ATPase-domain) | 0.000008982 | Direct |
| Extended AAA-ATPase domain | 0.00002935 | Direct |
| Nucleosome core histones | 0.0001419 | Direct |
| Cdc48 domain 2-like | 0.0005227 | Direct |
| Anticodon-binding domain | 0.0005227 | Direct |
| Cdc48 N-terminal domain-like | 0.0005227 | Direct |
| BTB/POZ domain | 0.0006853 | Direct |
| Single strand DNA-binding domain, SSB | 0.001047 | Inherited |
| Sm motif of small nuclear ribonucleoproteins, SNRNP | 0.002198 | Inherited |
| F1F0 ATP synthase subunit C | 0.002216 | Inherited |
| Translational machinery components | 0.002455 | Inherited |
| Skp1 dimerisation domain-like | 0.002954 | Inherited |
| Pumilio repeat | 0.008078 | Inherited |
| Cyclin | 0.008078 | Inherited |
| WD40-repeat | 0.0172 | Inherited |
| EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 0.03172 | Inherited |
| Elongation factors | 0.03192 | Inherited |
| Cold shock DNA-binding domain-like | 0.0365 | Inherited |
| Ubiquitin-related | 0.04573 | Inherited |
| DNA replication initiator (cdc21/cdc54) N-terminal domain | 0.05552 | Inherited |
| Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain | 0.05893 | Inherited |
| Retrovirus zinc finger-like domains | 0.06237 | Inherited |
| Actin/HSP70 | 0.08077 | Inherited |
| RNA editing terminal uridyl transferase 2, RET2, domain 2 | 0.1039 | Inherited |
| L30e/L7ae ribosomal proteins | 0.1039 | Inherited |
| Clathrin adaptor core protein | 0.1039 | Inherited |
| Anticodon-binding domain of Class II aaRS | 0.1039 | Inherited |
| SMAD domain | 0.1729 | Inherited |
| Motor proteins | 0.225 | Inherited |
| Canonical RBD | 0.2275 | Inherited |
| Nitrogenase iron protein-like | 0.2776 | Inherited |
| Cullin homology domain | 0.2776 | Inherited |
| SMAD MH1 domain | 0.2776 | Inherited |
| CCCH zinc finger | 0.2888 | Inherited |
| Class I aminoacyl-tRNA synthetases (RS), catalytic domain | 0.2888 | Inherited |
| Tetratricopeptide repeat (TPR) | 0.2888 | Inherited |
| Histone lysine methyltransferases | 0.3281 | Inherited |
| Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.4879 | Inherited |
| G proteins | 0.6486 | Inherited |
| Protein serine/threonine phosphatase | 0.8273 | Inherited |
| Protein kinases, catalytic subunit | 0.9931 | Inherited |
LINKTO: Domain2BO Download and Domain2BO Algorithm
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Supra-domain (Single)( show details)
Highlighted in gray are those with FDR>0.001
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Duplex) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
54849,52029
54849 - GroEL-intermediate domain like
52029 - GroEL apical domain-like | 0 | DIRECT |
48592,54849
48592 - GroEL equatorial domain-like
54849 - GroEL-intermediate domain like | 0 | DIRECT |
50692,54585
50692 - ADC-like
54585 - Cdc48 domain 2-like | 0 | DIRECT |
54585,52540
54585 - Cdc48 domain 2-like
52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
81811,82754
81811 - Helical domain of Sec23/24
82754 - C-terminal, gelsolin-like domain of Sec23/24 | 0 | DIRECT |
82919,53300
82919 - Zn-finger domain of Sec23/24
53300 - vWA-like | 0 | DIRECT |
52540,47917
52540 - P-loop containing nucleoside triphosphate hydrolases
47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0 | DIRECT |
81333,81333
81333 - F1F0 ATP synthase subunit C
81333 - F1F0 ATP synthase subunit C | 0.0003415 | DIRECT |
52540,46785
52540 - P-loop containing nucleoside triphosphate hydrolases
46785 - "Winged helix" DNA-binding domain | 0.0003415 | DIRECT |
49599,54695
49599 - TRAF domain-like
54695 - POZ domain | 0.0007096 | DIRECT |
50249,55681
50249 - Nucleic acid-binding proteins
55681 - Class II aaRS and biotin synthetases | 0.001463 | INHERITED FROM: pachytene region organization variant || pachytene progression during oogenesis variant || oogenesis variant || germ cell differentiation variant || diplotene progression during oogenesis variant || meiotic progression during oogenesis variant || meiosis variant || diplotene region organization variant || meiotic progression prophase variant || oocyte number decreased |
54695,81382
54695 - POZ domain
81382 - Skp1 dimerisation domain-like | 0.005859 | INHERITED FROM: meiotic chromosome organization variant || X chromosome nondisjunction || pachytene progression during oogenesis variant || oogenesis variant || germ cell differentiation variant || meiotic progression during oogenesis variant || meiosis variant || univalent meiotic chromosomes || germ cell development variant || meiotic progression prophase variant |
52540,50447
52540 - P-loop containing nucleoside triphosphate hydrolases
50447 - Translation proteins | 0.01403 | INHERITED FROM: pachytene region organization variant || pachytene progression during oogenesis variant || oogenesis variant || diplotene progression during oogenesis variant || meiotic progression during oogenesis variant || meiosis variant || meiotic progression prophase variant |
81301,81631
81301 - Nucleotidyltransferase
81631 - PAP/OAS1 substrate-binding domain | 0.01733 | INHERITED FROM: germ cell development variant |
50447,50465
50447 - Translation proteins
50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 0.02169 | INHERITED FROM: pachytene region organization variant || pachytene progression during oogenesis variant || diplotene absent during oogenesis || diplotene progression during oogenesis variant || meiotic progression during oogenesis variant || meiotic progression prophase variant || oocyte number decreased |
52374,47323
52374 - Nucleotidylyl transferase
47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.0605 | INHERITED FROM: pachytene region organization variant || pachytene progression during oogenesis variant || germ cell differentiation variant || meiotic progression during oogenesis variant || meiosis variant || meiotic progression prophase variant || oocyte number decreased |
47954,47954
47954 - Cyclin-like
47954 - Cyclin-like | 0.0605 | INHERITED FROM: no oocytes |
53067,53067
53067 - Actin-like ATPase domain
53067 - Actin-like ATPase domain | 0.1122 | INHERITED FROM: germ cell development variant |
48371,48371
48371 - ARM repeat
48371 - ARM repeat | 0.1137 | INHERITED FROM: germ cell differentiation variant || diplotene progression during oogenesis variant || meiotic progression during oogenesis variant |
52540,52540
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases | 0.2506 | INHERITED FROM: meiotic spindle defective early emb || meiotic spindle defective |
90229,90229
90229 - CCCH zinc finger
90229 - CCCH zinc finger | 0.3447 | INHERITED FROM: oocyte meiotic maturation variant |
57196,57196
57196 - EGF/Laminin
57196 - EGF/Laminin | 0.6592 | INHERITED FROM: diakinesis progression during oogenesis variant |
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
54849,52029
54849 - GroEL-intermediate domain like
52029 - GroEL apical domain-like | 0 | Direct |
48592,54849
48592 - GroEL equatorial domain-like
54849 - GroEL-intermediate domain like | 0 | Direct |
50692,54585
50692 - ADC-like
54585 - Cdc48 domain 2-like | 0 | Direct |
54585,52540
54585 - Cdc48 domain 2-like
52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
81811,82754
81811 - Helical domain of Sec23/24
82754 - C-terminal, gelsolin-like domain of Sec23/24 | 0 | Direct |
82919,53300
82919 - Zn-finger domain of Sec23/24
53300 - vWA-like | 0 | Direct |
52540,47917
52540 - P-loop containing nucleoside triphosphate hydrolases
47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0 | Direct |
81333,81333
81333 - F1F0 ATP synthase subunit C
81333 - F1F0 ATP synthase subunit C | 0.0003415 | Direct |
52540,46785
52540 - P-loop containing nucleoside triphosphate hydrolases
46785 - "Winged helix" DNA-binding domain | 0.0003415 | Direct |
49599,54695
49599 - TRAF domain-like
54695 - POZ domain | 0.0007096 | Direct |
50249,55681
50249 - Nucleic acid-binding proteins
55681 - Class II aaRS and biotin synthetases | 0.001463 | Inherited |
54695,81382
54695 - POZ domain
81382 - Skp1 dimerisation domain-like | 0.005859 | Inherited |
52540,50447
52540 - P-loop containing nucleoside triphosphate hydrolases
50447 - Translation proteins | 0.01403 | Inherited |
81301,81631
81301 - Nucleotidyltransferase
81631 - PAP/OAS1 substrate-binding domain | 0.01733 | Inherited |
50447,50465
50447 - Translation proteins
50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 0.02169 | Inherited |
52374,47323
52374 - Nucleotidylyl transferase
47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.0605 | Inherited |
47954,47954
47954 - Cyclin-like
47954 - Cyclin-like | 0.0605 | Inherited |
53067,53067
53067 - Actin-like ATPase domain
53067 - Actin-like ATPase domain | 0.1122 | Inherited |
48371,48371
48371 - ARM repeat
48371 - ARM repeat | 0.1137 | Inherited |
52540,52540
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases | 0.2506 | Inherited |
90229,90229
90229 - CCCH zinc finger
90229 - CCCH zinc finger | 0.3447 | Inherited |
57196,57196
57196 - EGF/Laminin
57196 - EGF/Laminin | 0.6592 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Triple) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Plot distribution on species Tree Of Life (sTOL) for Superfamily and/or Family domains annotated by this WP term
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Plot tree as:
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Download Newick format tree:
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( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domain
architecture data for all genomes in SUPERFAMILY. The PAUP
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Plot distribution on species Tree Of Life (sTOL) for single supra-domains annotated by this WP term
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Plot tree as:
| |
Download Newick format tree:
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Browsing in TREE OF LIFE:
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( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
|
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> BO Hierarchy > gametogenesis variant
