SUPERFAMILY 1.75 HMM library and genome assignments server

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SOCS box-like family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   SOCS box-like [ 158234]
Superfamily:   SOCS box-like [ 158235]
Family:   SOCS box-like [ 158236] (2)

Family statistics
Genomes (34) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 54 78 2
Proteins 54 78 2

Disease Ontology (DO)

show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)organ system cancer0.2371Least InformativeInherited
Disease Ontology (DO)disease by infectious agent0.003964Moderately InformativeInherited
Disease Ontology (DO)hematologic cancer0.06586Moderately InformativeInherited
Disease Ontology (DO)myeloid leukemia0.106InformativeInherited
Disease Ontology (DO)in situ carcinoma0.00003029Highly InformativeDirect
Disease Ontology (DO)tuberculosis0.0004915Highly InformativeDirect

Document: DO annotation of SCOP domains

Fly Anatomy (FA)

(show details) Document: FA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)tail region0.002071Moderately InformativeInherited
Xenopus ANatomical entity (XAN)tail0.0008349InformativeDirect

Document: XA annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Disease Ontology (DO) · Fly Anatomy (FA) · Xenopus Anatomy (XA) ]

Internal database links

Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.

Superfamily level     Family level

Alignments of sequences to 2 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.

Superfamily level

Browse and view proteins in genomes which have different domain combinations including a SOCS box-like domain.

Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.

Jump to [ Top of page · SCOP classification · Disease Ontology (DO) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Internal database links ]