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Fly Anatomy (FA): adult  
(show info)
Biomedical Ontology
Like Gene Ontology (GO), biomedical ontology such as phenotype ontology classifies and organizes gene-mutant/null phenotypic information from the very general at the top to more specific terms in the directed acyclic graph (DAG) by viewing an individual term as a node and its relations to parental terms (allowing for multiple parents) as directed edges. To navigate this hierarchy, we display all parental phenotypic terms to the current phenotypic term of interest ordered by their shortest distances to the current term. Also, only direct children phenotypic terms of the current phenotypic term are listed. Biomedical ontologies we have incorporated are as follows:
- Disease Ontology (DO) Ontology DO semantically integrates disease and medical vocabularies through extensive cross mapping of DO terms to MeSH, ICD, NCI’s thesaurus, SNOMED and OMIM.
- Human Phenotype (HP) Ontology HP captures phenotypic abnormalities that are described in OMIM, along with the corresponding disease-causing genes. It includes three complementary biological concepts: Mode_of_Inheritance (MI), ONset_and_clinical_course (ON), and Phenotypic_Abnormality (PA).
- Mouse Phenotype (MP) Ontology MP describes phenotypes of the mouse after a specific gene is genetically disrupted. Using it, Mouse Genome Informatics (MGI) provides high-coverate gene-level phenotypes for the mouse.
- Worm Phenotype (WP) Ontology WP classifies and organizes phenotype descriptions for C. elegans and other nematodes. Using it, WormBase provides primary resource for phenotype annotations for C. elegans.
- Yeast Phenotype (YP) Ontology Based on YP which is the major contributor to the ‘Ascomycete phenotype ontology’, Saccharomyces Genome Database (SGD) provides single mutant phenotypes for every gene in the yeast genome.
- Fly Phenotype (FP) Ontology FP refers to FlyBase controlled vocabulary. Specifically, a structured controlled vocabulary is used for the annotation of alleles (for their mutagen etc) in FlyBase.
- Fly Anatomy (FA) Ontology FA is a structured controlled vocabulary of the anatomy of Drosophila melanogaster, used for the description of phenotypes and where a gene is expressed.
- Zebrafish Anatomy (ZA) Ontology ZA displays anatomical terms of the zebrafish using standard anatomical nomenclature, together with affected genes.
- Xenopus Anatomy (XA) Ontology XA represents the lineage of tissues and the timing of development for frogs (Xenopus laevis and Xenopus tropicalis). It is used to annotate Xenopus gene expression patterns and mutant and morphant phenotypes.
- Arabidopsis Plant Ontology (AP) Ontology As a major contributor to Plant Ontology which describes plant anatomical and morphological structures (AN) and growth and developmental stages (DE), the Arabidopsis Information Resource (TAIR) provides arabidopsis plant ontology annotations for the model higher plant Arabidopsis thaliana.
- Enzyme Commission (EC) Ontology Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed.
- UniProtKB KeyWords (KW) Ontology Keywords in UniProtKB are controlled vocabulary, providing a summary of the entry content and are used to index UniProtKB/Swiss-Prot entries based on 10 categories (the category "Technical term" being excluded here). Each keyword is attributed manually to UniProtKB/Swiss-Prot entries and automatically to UniProtKB/TrEMBL entries (according to specific annotation rules).
- CTD Diseases (CD) Ontology CD is MEDIC disease vocabulary that is modified by CTD from the "Diseases" [C] branch of Medical Subject Headings (MeSH), combined with genetic disorders from the Online Mendelian Inheritance in OMIM database.
- CTD Chemicals (CC) Ontology CC is chemical vocabulary that is adapted by CTD from the "Chemicals and Drugs" category and Supplementary Concept Records of Medical Subject Headings (MeSH, a hierarchical vocabulary used to index articles for MEDLINE/PubMed).
Jump to [ Top · Hierarchy · Annotations ]
Root: FA Hierarchy (fly anatomy from FlyBase anatomy ontology)
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Family( show details)
Highlighted in gray are those with FDR_all>0.001
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Myb/SANT domain | 0 | DIRECT |
| RNase III catalytic domain-like | 0 | DIRECT |
| Cap-Gly domain | 0 | DIRECT |
| Eps15 homology domain (EH domain) | 0 | DIRECT |
| Ubiquitin carboxyl-terminal hydrolase, UCH | 0 | DIRECT |
| Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta | 0 | DIRECT |
| Third domain of FERM | 0 | DIRECT |
| p120GAP domain-like | 0 | DIRECT |
| Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0 | DIRECT |
| N-acetylmuramoyl-L-alanine amidase-like | 0 | DIRECT |
| Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 0 | DIRECT |
| Rel/Dorsal transcription factors, DNA-binding domain | 0 | DIRECT |
| First domain of FERM | 0 | DIRECT |
| A DNA-binding domain in eukaryotic transcription factors | 0 | DIRECT |
| SCF ubiquitin ligase complex WHB domain | 0 | DIRECT |
| Erythroid transcription factor GATA-1 | 0 | DIRECT |
| Dachshund-homology domain | 0 | DIRECT |
| Phoshoinositide 3-kinase (PI3K), catalytic domain | 0 | DIRECT |
| PX domain | 0 | DIRECT |
| Metal cation-transporting ATPase, ATP-binding domain N | 0 | DIRECT |
| Frizzled cysteine-rich domain | 0 | DIRECT |
| Group II chaperonin (CCT, TRIC), intermediate domain | 0 | DIRECT |
| SMAD MH1 domain | 0 | DIRECT |
| Cullin homology domain | 0 | DIRECT |
| Class I glutamine amidotransferases (GAT) | 0 | DIRECT |
| SPRY domain | 0 | DIRECT |
| Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain | 0 | DIRECT |
| VHS domain | 0 | DIRECT |
| ARID domain | 0 | DIRECT |
| DBL homology domain (DH-domain) | 0 | DIRECT |
| ZZ domain | 0 | DIRECT |
| Diacylglycerol kinase-like | 0 | DIRECT |
| NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain | 0 | DIRECT |
| Plexin repeat | 0 | DIRECT |
| Extracellular domain of cell surface receptors | 0 | DIRECT |
| Histone deacetylase, HDAC | 0 | DIRECT |
| Transforming growth factor (TGF)-beta | 0 | DIRECT |
| Sema domain | 0 | DIRECT |
| Hairy Orange domain | 0 | DIRECT |
| Cysteine-rich DNA binding domain, (DM domain) | 0 | DIRECT |
| Laminin-type module | 0 | DIRECT |
| POU-specific domain | 0 | DIRECT |
| Tetramerization domain of potassium channels | 0 | DIRECT |
| Mob1/phocein | 0 | DIRECT |
| Rhomboid-like | 0 | DIRECT |
| SAP domain | 0 | DIRECT |
| Integrin domains | 0 | DIRECT |
| Pepsin-like | 0 | DIRECT |
| Hypoxia-inducible factor Hif2a, C-terminal domain | 0 | DIRECT |
| Cell cycle control phosphatase, catalytic domain | 0 | DIRECT |
| Group II chaperonin (CCT, TRIC), ATPase domain | 0 | DIRECT |
| Group II chaperonin (CCT, TRIC), apical domain | 0 | DIRECT |
| Cullin repeat | 0 | DIRECT |
| Second domain of FERM | 0 | DIRECT |
| Arrestin/Vps26-like | 0 | DIRECT |
| Ubiquitin carboxyl-terminal hydrolase UCH-L | 0 | DIRECT |
| Phoshoinositide 3-kinase (PI3K) helical domain | 0 | DIRECT |
| MIR domain | 0 | DIRECT |
| Homeodomain | 0.0000000002057 | DIRECT |
| HLH, helix-loop-helix DNA-binding domain | 0.000004602 | DIRECT |
| Classic zinc finger, C2H2 | 0.0008068 | DIRECT |
| Nuclear receptor ligand-binding domain | 0.00836 | INHERITED FROM: interneuron || mushroom body intrinsic neuron || supraesophageal ganglion neuron |
| Protein kinases, catalytic subunit | 0.01049 | INHERITED FROM: photoreceptor cell R8 of pale ommatidium || intestinal stem cell |
| Nuclear receptor | 0.02066 | INHERITED FROM: interneuron || mushroom body intrinsic neuron || supraesophageal ganglion neuron |
| Fibronectin type III | 0.02462 | INHERITED FROM: LNv neuron || lobe system of adult mushroom body || pacemaker neuron || LN period neuron || gustatory receptor neuron || adult pacemaker neuron || s-LNv neuron |
| HMG-box | 0.03478 | INHERITED FROM: adult external thorax || adult thorax || adult mesothoracic segment || wing || adult thoracic segment |
| Paired domain | 0.05346 | INHERITED FROM: EG neuron || RP2 motor neuron || EL neuron || U neuron |
| Histone lysine methyltransferases | 0.09628 | INHERITED FROM: adult metathoracic segment || metathoracic leg || haltere |
| SH2 domain | 0.1006 | INHERITED FROM: rhabdomeric photoreceptor cell || adult segment || photoreceptor cell || adult peripheral nervous system || ommatidium || adult optic lobe neuron || histaminergic neuron || photoreceptor cell R7 |
| I set domains | 0.1077 | INHERITED FROM: adult cerebral ganglion || LNv neuron || lobe system of adult mushroom body || adult descending neuron || pacemaker neuron || adult central nervous system || gustatory system neuron || mechanosensory system neuron || adult head segment || gustatory receptor neuron || adult pacemaker neuron || larval abdominal sensory neuron || s-LNv neuron || adult brain || leg taste bristle chemosensory neuron |
| Calponin-homology domain, CH-domain | 0.1134 | INHERITED FROM: indirect flight muscle || flight muscle |
| Forkhead DNA-binding domain | 0.123 | INHERITED FROM: RP2sib neuron |
| Laminin G-like module | 0.1558 | INHERITED FROM: rhabdomeric photoreceptor cell || photoreceptor cell R4 |
| Caspase catalytic domain | 0.1724 | INHERITED FROM: peptidergic neuron |
| Ankyrin repeat | 0.175 | INHERITED FROM: ventral multidendritic neuron || Johnston organ neuron |
| Leucine zipper domain | 0.1814 | INHERITED FROM: adult heart |
| BTB/POZ domain | 0.1823 | INHERITED FROM: adult antennal segment || adult abdominal segment || prothoracic tarsal segment |
| SMAD domain | 0.2315 | INHERITED FROM: wing blade || wing vein |
| SAM (sterile alpha motif) domain | 0.3092 | INHERITED FROM: adult metathoracic segment || prothoracic leg || adult abdominal segment 4 || metatarsus || mesothoracic leg || metatarsus of male prothoracic leg || prothoracic tarsal segment || adult prothoracic segment || prothoracic metatarsus || sex comb |
| PLC-like (P variant) | 0.3092 | INHERITED FROM: mesothoracic tergum || larval dorsal multidendritic neuron ddaC || larval dorsal multidendritic neuron |
| Choline/Carnitine O-acyltransferase | 0.3096 | INHERITED FROM: adult muscle system || skeletal muscle of mesothorax || skeletal muscle of thorax || adult somatic muscle || flight muscle |
| EGF-type module | 0.3532 | INHERITED FROM: adult heart || adult antennal segment || wing blade || adult dorsal vessel || adult external head || adult circulatory system |
| Transducin (alpha subunit), insertion domain | 0.474 | INHERITED FROM: eo neuron |
| Ubiquitin-related | 0.5091 | INHERITED FROM: mushroom body extrinsic neuron |
| Cadherin | 0.5912 | INHERITED FROM: outer photoreceptor cell || wing hair || photoreceptor cell R4 |
| Growth factor receptor domain | 0.677 | INHERITED FROM: ocellus || ocellar triangle || tibia |
| G proteins | 1 | INHERITED FROM: wing hair |
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Myb/SANT domain | 0 | Direct |
| RNase III catalytic domain-like | 0 | Direct |
| Cap-Gly domain | 0 | Direct |
| Eps15 homology domain (EH domain) | 0 | Direct |
| Ubiquitin carboxyl-terminal hydrolase, UCH | 0 | Direct |
| Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta | 0 | Direct |
| Third domain of FERM | 0 | Direct |
| p120GAP domain-like | 0 | Direct |
| Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0 | Direct |
| N-acetylmuramoyl-L-alanine amidase-like | 0 | Direct |
| Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 0 | Direct |
| Rel/Dorsal transcription factors, DNA-binding domain | 0 | Direct |
| First domain of FERM | 0 | Direct |
| A DNA-binding domain in eukaryotic transcription factors | 0 | Direct |
| SCF ubiquitin ligase complex WHB domain | 0 | Direct |
| Erythroid transcription factor GATA-1 | 0 | Direct |
| Dachshund-homology domain | 0 | Direct |
| Phoshoinositide 3-kinase (PI3K), catalytic domain | 0 | Direct |
| PX domain | 0 | Direct |
| Metal cation-transporting ATPase, ATP-binding domain N | 0 | Direct |
| Frizzled cysteine-rich domain | 0 | Direct |
| Group II chaperonin (CCT, TRIC), intermediate domain | 0 | Direct |
| SMAD MH1 domain | 0 | Direct |
| Cullin homology domain | 0 | Direct |
| Class I glutamine amidotransferases (GAT) | 0 | Direct |
| SPRY domain | 0 | Direct |
| Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain | 0 | Direct |
| VHS domain | 0 | Direct |
| ARID domain | 0 | Direct |
| DBL homology domain (DH-domain) | 0 | Direct |
| ZZ domain | 0 | Direct |
| Diacylglycerol kinase-like | 0 | Direct |
| NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain | 0 | Direct |
| Plexin repeat | 0 | Direct |
| Extracellular domain of cell surface receptors | 0 | Direct |
| Histone deacetylase, HDAC | 0 | Direct |
| Transforming growth factor (TGF)-beta | 0 | Direct |
| Sema domain | 0 | Direct |
| Hairy Orange domain | 0 | Direct |
| Cysteine-rich DNA binding domain, (DM domain) | 0 | Direct |
| Laminin-type module | 0 | Direct |
| POU-specific domain | 0 | Direct |
| Tetramerization domain of potassium channels | 0 | Direct |
| Mob1/phocein | 0 | Direct |
| Rhomboid-like | 0 | Direct |
| SAP domain | 0 | Direct |
| Integrin domains | 0 | Direct |
| Pepsin-like | 0 | Direct |
| Hypoxia-inducible factor Hif2a, C-terminal domain | 0 | Direct |
| Cell cycle control phosphatase, catalytic domain | 0 | Direct |
| Group II chaperonin (CCT, TRIC), ATPase domain | 0 | Direct |
| Group II chaperonin (CCT, TRIC), apical domain | 0 | Direct |
| Cullin repeat | 0 | Direct |
| Second domain of FERM | 0 | Direct |
| Arrestin/Vps26-like | 0 | Direct |
| Ubiquitin carboxyl-terminal hydrolase UCH-L | 0 | Direct |
| Phoshoinositide 3-kinase (PI3K) helical domain | 0 | Direct |
| MIR domain | 0 | Direct |
| Homeodomain | 0.0000000002057 | Direct |
| HLH, helix-loop-helix DNA-binding domain | 0.000004602 | Direct |
| Classic zinc finger, C2H2 | 0.0008068 | Direct |
| Nuclear receptor ligand-binding domain | 0.00836 | Inherited |
| Protein kinases, catalytic subunit | 0.01049 | Inherited |
| Nuclear receptor | 0.02066 | Inherited |
| Fibronectin type III | 0.02462 | Inherited |
| HMG-box | 0.03478 | Inherited |
| Paired domain | 0.05346 | Inherited |
| Histone lysine methyltransferases | 0.09628 | Inherited |
| SH2 domain | 0.1006 | Inherited |
| I set domains | 0.1077 | Inherited |
| Calponin-homology domain, CH-domain | 0.1134 | Inherited |
| Forkhead DNA-binding domain | 0.123 | Inherited |
| Laminin G-like module | 0.1558 | Inherited |
| Caspase catalytic domain | 0.1724 | Inherited |
| Ankyrin repeat | 0.175 | Inherited |
| Leucine zipper domain | 0.1814 | Inherited |
| BTB/POZ domain | 0.1823 | Inherited |
| SMAD domain | 0.2315 | Inherited |
| SAM (sterile alpha motif) domain | 0.3092 | Inherited |
| PLC-like (P variant) | 0.3092 | Inherited |
| Choline/Carnitine O-acyltransferase | 0.3096 | Inherited |
| EGF-type module | 0.3532 | Inherited |
| Transducin (alpha subunit), insertion domain | 0.474 | Inherited |
| Ubiquitin-related | 0.5091 | Inherited |
| Cadherin | 0.5912 | Inherited |
| Growth factor receptor domain | 0.677 | Inherited |
| G proteins | 1 | Inherited |
LINKTO: Domain2BO Download and Domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Single)( show details)
Highlighted in gray are those with FDR>0.001
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Duplex) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
81296,81296 81296 - E set domains 81296 - E set domains | 0 | DIRECT |
75632,46785 75632 - Cullin homology domain 46785 - "Winged helix" DNA-binding domain | 0 | DIRECT |
48371,56112 48371 - ARM repeat 56112 - Protein kinase-like (PK-like) | 0 | DIRECT |
49562,49562 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) | 0 | DIRECT |
49265,48726 49265 - Fibronectin type III 48726 - Immunoglobulin | 0 | DIRECT |
57716,48508 57716 - Glucocorticoid receptor-like (DNA-binding domain) 48508 - Nuclear receptor ligand-binding domain | 0 | DIRECT |
49417,81296 49417 - p53-like transcription factors 81296 - E set domains | 0 | DIRECT |
81660,56784 81660 - Metal cation-transporting ATPase, ATP-binding domain N 56784 - HAD-like | 0 | DIRECT |
48065,50729 48065 - DBL homology domain (DH-domain) 50729 - PH domain-like | 0 | DIRECT |
54849,52029 54849 - GroEL-intermediate domain like 52029 - GroEL apical domain-like | 0 | DIRECT |
50044,55550 50044 - SH3-domain 55550 - SH2 domain | 0 | DIRECT |
47459,55785 47459 - HLH, helix-loop-helix DNA-binding domain 55785 - PYP-like sensor domain (PAS domain) | 0 | DIRECT |
49562,48371 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) 48371 - ARM repeat | 0 | DIRECT |
47031,50729 47031 - Second domain of FERM 50729 - PH domain-like | 0 | DIRECT |
55550,50044 55550 - SH2 domain 50044 - SH3-domain | 0 | DIRECT |
101912,103575 101912 - Sema domain 103575 - Plexin repeat | 0 | DIRECT |
48403,48403 48403 - Ankyrin repeat 48403 - Ankyrin repeat | 0 | DIRECT |
47220,47220 47220 - alpha-catenin/vinculin-like 47220 - alpha-catenin/vinculin-like | 0 | DIRECT |
54236,47031 54236 - Ubiquitin-like 47031 - Second domain of FERM | 0 | DIRECT |
47459,158457 47459 - HLH, helix-loop-helix DNA-binding domain 158457 - Orange domain-like | 0 | DIRECT |
47413,46689 47413 - lambda repressor-like DNA-binding domains 46689 - Homeodomain-like | 0 | DIRECT |
52058,48726 52058 - L domain-like 48726 - Immunoglobulin | 0 | DIRECT |
74788,75632 74788 - Cullin repeat-like 75632 - Cullin homology domain | 0 | DIRECT |
51045,51045 51045 - WW domain 51045 - WW domain | 0 | DIRECT |
48592,54849 48592 - GroEL equatorial domain-like 54849 - GroEL-intermediate domain like | 0 | DIRECT |
57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 0.0000007976 | DIRECT |
48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin | 0.05327 | INHERITED FROM: s-LNv neuron || LN period neuron || leg taste bristle chemosensory neuron || lobe system of adult mushroom body || adult head segment || LNv neuron || adult pacemaker neuron || adult cerebral ganglion || pacemaker neuron || adult brain |
49899,49899 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0.06273 | INHERITED FROM: adult head || rhabdomeric photoreceptor cell || photoreceptor cell R4 || adult procephalic segment |
46966,46966 46966 - Spectrin repeat 46966 - Spectrin repeat | 0.08595 | INHERITED FROM: adult labral segment || adult protocerebrum |
54928,54928 54928 - RNA-binding domain, RBD 54928 - RNA-binding domain, RBD | 0.08917 | INHERITED FROM: bristle of mesothoracic tergum |
47473,47473 47473 - EF-hand 47473 - EF-hand | 0.09006 | INHERITED FROM: bouton |
49265,49265 49265 - Fibronectin type III 49265 - Fibronectin type III | 0.1169 | INHERITED FROM: multidendritic neuron || lamina || abdominal neuron || larval abdominal sensory neuron || dendritic arborizing neuron |
48726,49265 48726 - Immunoglobulin 49265 - Fibronectin type III | 0.1524 | INHERITED FROM: adult antennal lobe || s-LNv neuron || LN period neuron || leg taste bristle chemosensory neuron || adult antennal lobe glomerulus || lobe system of adult mushroom body || chemosensory system neuron || adult descending neuron || LNv neuron || adult pacemaker neuron || chemosensory neuron || giant fiber neuron || pacemaker neuron || gustatory receptor neuron || mechanosensory neuron |
57196,57184 57196 - EGF/Laminin 57184 - Growth factor receptor domain | 0.1593 | INHERITED FROM: scutum || wing blade dorsal compartment || inner photoreceptor cell || adult mesothoracic sensillum || mesothoracic bristle || adult heart || adult dorsal vessel || interommatidial bristle || adult circulatory system || wing vein || joint || leg || photoreceptor cell R7 || adult thoracic sensillum |
57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.1665 | INHERITED FROM: tertiary pigment cell || wing blade dorsal compartment || secondary pigment cell || eye photoreceptor cell stalk || adult circulatory system || postfrons || frons || joint || rhabdomeric photoreceptor cell || ocellus |
52777,52777 52777 - CoA-dependent acyltransferases 52777 - CoA-dependent acyltransferases | 0.2941 | INHERITED FROM: adult muscle system || skeletal muscle of mesothorax || skeletal muscle of thorax || adult somatic muscle || flight muscle |
47895,52540 47895 - Transducin (alpha subunit), insertion domain 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.4527 | INHERITED FROM: eo neuron |
49313,49313 49313 - Cadherin-like 49313 - Cadherin-like | 0.5624 | INHERITED FROM: wing hair || outer photoreceptor cell || photoreceptor cell R4 |
50978,50978 50978 - WD40 repeat-like 50978 - WD40 repeat-like | 0.9164 | INHERITED FROM: mechanosensory system neuron || mechanosensory neuron |
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
81296,81296 81296 - E set domains 81296 - E set domains | 0 | Direct |
75632,46785 75632 - Cullin homology domain 46785 - "Winged helix" DNA-binding domain | 0 | Direct |
48371,56112 48371 - ARM repeat 56112 - Protein kinase-like (PK-like) | 0 | Direct |
49562,49562 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) | 0 | Direct |
49265,48726 49265 - Fibronectin type III 48726 - Immunoglobulin | 0 | Direct |
57716,48508 57716 - Glucocorticoid receptor-like (DNA-binding domain) 48508 - Nuclear receptor ligand-binding domain | 0 | Direct |
49417,81296 49417 - p53-like transcription factors 81296 - E set domains | 0 | Direct |
81660,56784 81660 - Metal cation-transporting ATPase, ATP-binding domain N 56784 - HAD-like | 0 | Direct |
48065,50729 48065 - DBL homology domain (DH-domain) 50729 - PH domain-like | 0 | Direct |
54849,52029 54849 - GroEL-intermediate domain like 52029 - GroEL apical domain-like | 0 | Direct |
50044,55550 50044 - SH3-domain 55550 - SH2 domain | 0 | Direct |
47459,55785 47459 - HLH, helix-loop-helix DNA-binding domain 55785 - PYP-like sensor domain (PAS domain) | 0 | Direct |
49562,48371 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) 48371 - ARM repeat | 0 | Direct |
47031,50729 47031 - Second domain of FERM 50729 - PH domain-like | 0 | Direct |
55550,50044 55550 - SH2 domain 50044 - SH3-domain | 0 | Direct |
101912,103575 101912 - Sema domain 103575 - Plexin repeat | 0 | Direct |
48403,48403 48403 - Ankyrin repeat 48403 - Ankyrin repeat | 0 | Direct |
47220,47220 47220 - alpha-catenin/vinculin-like 47220 - alpha-catenin/vinculin-like | 0 | Direct |
54236,47031 54236 - Ubiquitin-like 47031 - Second domain of FERM | 0 | Direct |
47459,158457 47459 - HLH, helix-loop-helix DNA-binding domain 158457 - Orange domain-like | 0 | Direct |
47413,46689 47413 - lambda repressor-like DNA-binding domains 46689 - Homeodomain-like | 0 | Direct |
52058,48726 52058 - L domain-like 48726 - Immunoglobulin | 0 | Direct |
74788,75632 74788 - Cullin repeat-like 75632 - Cullin homology domain | 0 | Direct |
51045,51045 51045 - WW domain 51045 - WW domain | 0 | Direct |
48592,54849 48592 - GroEL equatorial domain-like 54849 - GroEL-intermediate domain like | 0 | Direct |
57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 0.0000007976 | Direct |
48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin | 0.05327 | Inherited |
49899,49899 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0.06273 | Inherited |
46966,46966 46966 - Spectrin repeat 46966 - Spectrin repeat | 0.08595 | Inherited |
54928,54928 54928 - RNA-binding domain, RBD 54928 - RNA-binding domain, RBD | 0.08917 | Inherited |
47473,47473 47473 - EF-hand 47473 - EF-hand | 0.09006 | Inherited |
49265,49265 49265 - Fibronectin type III 49265 - Fibronectin type III | 0.1169 | Inherited |
48726,49265 48726 - Immunoglobulin 49265 - Fibronectin type III | 0.1524 | Inherited |
57196,57184 57196 - EGF/Laminin 57184 - Growth factor receptor domain | 0.1593 | Inherited |
57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.1665 | Inherited |
52777,52777 52777 - CoA-dependent acyltransferases 52777 - CoA-dependent acyltransferases | 0.2941 | Inherited |
47895,52540 47895 - Transducin (alpha subunit), insertion domain 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.4527 | Inherited |
49313,49313 49313 - Cadherin-like 49313 - Cadherin-like | 0.5624 | Inherited |
50978,50978 50978 - WD40 repeat-like 50978 - WD40 repeat-like | 0.9164 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Triple) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
49562,48371,56112 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) 48371 - ARM repeat 56112 - Protein kinase-like (PK-like) | 0 | DIRECT |
81660,56784,81665 81660 - Metal cation-transporting ATPase, ATP-binding domain N 56784 - HAD-like 81665 - Calcium ATPase, transmembrane domain M | 0 | DIRECT |
74788,75632,46785 74788 - Cullin repeat-like 75632 - Cullin homology domain 46785 - "Winged helix" DNA-binding domain | 0 | DIRECT |
49265,48726,48726 49265 - Fibronectin type III 48726 - Immunoglobulin 48726 - Immunoglobulin | 0 | DIRECT |
81296,81296,81296 81296 - E set domains 81296 - E set domains 81296 - E set domains | 0 | DIRECT |
57196,49899,49899 57196 - EGF/Laminin 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
46966,46966,46966 46966 - Spectrin repeat 46966 - Spectrin repeat 46966 - Spectrin repeat | 0 | DIRECT |
48592,54849,52029 48592 - GroEL equatorial domain-like 54849 - GroEL-intermediate domain like 52029 - GroEL apical domain-like | 0 | DIRECT |
54236,47031,50729 54236 - Ubiquitin-like 47031 - Second domain of FERM 50729 - PH domain-like | 0 | DIRECT |
49899,49899,49899 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
57667,57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 0.0003978 | DIRECT |
48726,48726,49265 48726 - Immunoglobulin 48726 - Immunoglobulin 49265 - Fibronectin type III | 0.05603 | INHERITED FROM: adult antennal lobe || s-LNv neuron || LN period neuron || leg taste bristle chemosensory neuron || adult antennal lobe glomerulus || lobe system of adult mushroom body || chemosensory system neuron || adult descending neuron || LNv neuron || adult pacemaker neuron || chemosensory neuron || giant fiber neuron || eo neuron || pacemaker neuron || mechanosensory system neuron || gustatory receptor neuron || mechanosensory neuron |
57196,57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.1063 | INHERITED FROM: photoreceptor cell R6 || photoreceptor cell R1 || tertiary pigment cell || wing blade dorsal compartment || secondary pigment cell || adult external head || ocellar triangle || eye photoreceptor cell stalk || histaminergic neuron || postfrons || frons || joint || rhabdomeric photoreceptor cell || adult optic lobe neuron || ocellus || adult head sensillum || sensory neuron |
48726,48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin 48726 - Immunoglobulin | 0.2081 | INHERITED FROM: s-LNv neuron || interneuron || leg taste bristle chemosensory neuron || lobe system of adult mushroom body || LNv neuron || adult pacemaker neuron || pacemaker neuron || adult brain || gustatory receptor neuron |
57196,57196,57184 57196 - EGF/Laminin 57196 - EGF/Laminin 57184 - Growth factor receptor domain | 0.5616 | INHERITED FROM: bristle of mesothoracic tergum || dorsal mesothorax || scutum || tergum || adult external mesothorax || adult thoracic mechanosensory chaeta || mesothoracic tergum |
49313,49313,49313 49313 - Cadherin-like 49313 - Cadherin-like 49313 - Cadherin-like | 0.5624 | INHERITED FROM: wing hair || outer photoreceptor cell || photoreceptor cell R4 |
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
49562,48371,56112 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) 48371 - ARM repeat 56112 - Protein kinase-like (PK-like) | 0 | Direct |
81660,56784,81665 81660 - Metal cation-transporting ATPase, ATP-binding domain N 56784 - HAD-like 81665 - Calcium ATPase, transmembrane domain M | 0 | Direct |
74788,75632,46785 74788 - Cullin repeat-like 75632 - Cullin homology domain 46785 - "Winged helix" DNA-binding domain | 0 | Direct |
49265,48726,48726 49265 - Fibronectin type III 48726 - Immunoglobulin 48726 - Immunoglobulin | 0 | Direct |
81296,81296,81296 81296 - E set domains 81296 - E set domains 81296 - E set domains | 0 | Direct |
57196,49899,49899 57196 - EGF/Laminin 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
46966,46966,46966 46966 - Spectrin repeat 46966 - Spectrin repeat 46966 - Spectrin repeat | 0 | Direct |
48592,54849,52029 48592 - GroEL equatorial domain-like 54849 - GroEL-intermediate domain like 52029 - GroEL apical domain-like | 0 | Direct |
54236,47031,50729 54236 - Ubiquitin-like 47031 - Second domain of FERM 50729 - PH domain-like | 0 | Direct |
49899,49899,49899 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
57667,57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 0.0003978 | Direct |
48726,48726,49265 48726 - Immunoglobulin 48726 - Immunoglobulin 49265 - Fibronectin type III | 0.05603 | Inherited |
57196,57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.1063 | Inherited |
48726,48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin 48726 - Immunoglobulin | 0.2081 | Inherited |
57196,57196,57184 57196 - EGF/Laminin 57196 - EGF/Laminin 57184 - Growth factor receptor domain | 0.5616 | Inherited |
49313,49313,49313 49313 - Cadherin-like 49313 - Cadherin-like 49313 - Cadherin-like | 0.5624 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Plot distribution on species Tree Of Life (sTOL) for Superfamily and/or Family domains annotated by this FA term
 |
Plot tree as:
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Download Newick format tree:
|
( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domain
architecture data for all genomes in SUPERFAMILY. The PAUP
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Plot distribution on species Tree Of Life (sTOL) for single supra-domains annotated by this FA term
 |
Plot tree as:
| |
Download Newick format tree:
| |
Browsing in TREE OF LIFE:
|
( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
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