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Fly Anatomy (FA): somatic cell  
(show info)
Biomedical Ontology
Like Gene Ontology (GO), biomedical ontology such as phenotype ontology classifies and organizes gene-mutant/null phenotypic information from the very general at the top to more specific terms in the directed acyclic graph (DAG) by viewing an individual term as a node and its relations to parental terms (allowing for multiple parents) as directed edges. To navigate this hierarchy, we display all parental phenotypic terms to the current phenotypic term of interest ordered by their shortest distances to the current term. Also, only direct children phenotypic terms of the current phenotypic term are listed. Biomedical ontologies we have incorporated are as follows:
- Disease Ontology (DO) Ontology DO semantically integrates disease and medical vocabularies through extensive cross mapping of DO terms to MeSH, ICD, NCI’s thesaurus, SNOMED and OMIM.
- Human Phenotype (HP) Ontology HP captures phenotypic abnormalities that are described in OMIM, along with the corresponding disease-causing genes. It includes three complementary biological concepts: Mode_of_Inheritance (MI), ONset_and_clinical_course (ON), and Phenotypic_Abnormality (PA).
- Mouse Phenotype (MP) Ontology MP describes phenotypes of the mouse after a specific gene is genetically disrupted. Using it, Mouse Genome Informatics (MGI) provides high-coverate gene-level phenotypes for the mouse.
- Worm Phenotype (WP) Ontology WP classifies and organizes phenotype descriptions for C. elegans and other nematodes. Using it, WormBase provides primary resource for phenotype annotations for C. elegans.
- Yeast Phenotype (YP) Ontology Based on YP which is the major contributor to the ‘Ascomycete phenotype ontology’, Saccharomyces Genome Database (SGD) provides single mutant phenotypes for every gene in the yeast genome.
- Fly Phenotype (FP) Ontology FP refers to FlyBase controlled vocabulary. Specifically, a structured controlled vocabulary is used for the annotation of alleles (for their mutagen etc) in FlyBase.
- Fly Anatomy (FA) Ontology FA is a structured controlled vocabulary of the anatomy of Drosophila melanogaster, used for the description of phenotypes and where a gene is expressed.
- Zebrafish Anatomy (ZA) Ontology ZA displays anatomical terms of the zebrafish using standard anatomical nomenclature, together with affected genes.
- Xenopus Anatomy (XA) Ontology XA represents the lineage of tissues and the timing of development for frogs (Xenopus laevis and Xenopus tropicalis). It is used to annotate Xenopus gene expression patterns and mutant and morphant phenotypes.
- Arabidopsis Plant Ontology (AP) Ontology As a major contributor to Plant Ontology which describes plant anatomical and morphological structures (AN) and growth and developmental stages (DE), the Arabidopsis Information Resource (TAIR) provides arabidopsis plant ontology annotations for the model higher plant Arabidopsis thaliana.
- Enzyme Commission (EC) Ontology Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed.
- UniProtKB KeyWords (KW) Ontology Keywords in UniProtKB are controlled vocabulary, providing a summary of the entry content and are used to index UniProtKB/Swiss-Prot entries based on 10 categories (the category "Technical term" being excluded here). Each keyword is attributed manually to UniProtKB/Swiss-Prot entries and automatically to UniProtKB/TrEMBL entries (according to specific annotation rules).
- CTD Diseases (CD) Ontology CD is MEDIC disease vocabulary that is modified by CTD from the "Diseases" [C] branch of Medical Subject Headings (MeSH), combined with genetic disorders from the Online Mendelian Inheritance in OMIM database.
- CTD Chemicals (CC) Ontology CC is chemical vocabulary that is adapted by CTD from the "Chemicals and Drugs" category and Supplementary Concept Records of Medical Subject Headings (MeSH, a hierarchical vocabulary used to index articles for MEDLINE/PubMed).
Jump to [ Top · Hierarchy · Annotations ]
Root: FA Hierarchy (fly anatomy from FlyBase anatomy ontology)
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Family( show details)
Highlighted in gray are those with FDR_all>0.001
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Myb/SANT domain | 0 | DIRECT |
| RNase III catalytic domain-like | 0 | DIRECT |
| Laminin G-like module | 0 | DIRECT |
| Isoprenyl diphosphate synthases | 0 | DIRECT |
| Eps15 homology domain (EH domain) | 0 | DIRECT |
| Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta | 0 | DIRECT |
| CAD domain | 0 | DIRECT |
| Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 0 | DIRECT |
| Rel/Dorsal transcription factors, DNA-binding domain | 0 | DIRECT |
| CoA-binding domain | 0 | DIRECT |
| Nitrogenase iron protein-like | 0 | DIRECT |
| Anticodon-binding domain of Class II aaRS | 0 | DIRECT |
| DNA polymerase III clamp loader subunits, C-terminal domain | 0 | DIRECT |
| SCF ubiquitin ligase complex WHB domain | 0 | DIRECT |
| Fibroblast growth factors (FGF) | 0 | DIRECT |
| Metal cation-transporting ATPase, ATP-binding domain N | 0 | DIRECT |
| Frizzled cysteine-rich domain | 0 | DIRECT |
| Group II chaperonin (CCT, TRIC), intermediate domain | 0 | DIRECT |
| SMAD MH1 domain | 0 | DIRECT |
| Cullin homology domain | 0 | DIRECT |
| Sec1/munc18-like (SM) proteins | 0 | DIRECT |
| Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain | 0 | DIRECT |
| beta-CASP RNA-metabolising hydrolases | 0 | DIRECT |
| Tropomyosin | 0 | DIRECT |
| Diacylglycerol kinase-like | 0 | DIRECT |
| NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain | 0 | DIRECT |
| Plexin repeat | 0 | DIRECT |
| Pointed domain | 0 | DIRECT |
| Inositol polyphosphate 5-phosphatase (IPP5) | 0 | DIRECT |
| Extracellular domain of cell surface receptors | 0 | DIRECT |
| Histone deacetylase, HDAC | 0 | DIRECT |
| Transforming growth factor (TGF)-beta | 0 | DIRECT |
| Sema domain | 0 | DIRECT |
| Laminin-type module | 0 | DIRECT |
| POU-specific domain | 0 | DIRECT |
| Tetramerization domain of potassium channels | 0 | DIRECT |
| Armadillo repeat | 0 | DIRECT |
| Mob1/phocein | 0 | DIRECT |
| Smc hinge domain | 0 | DIRECT |
| SAP domain | 0 | DIRECT |
| Integrin domains | 0 | DIRECT |
| Cell cycle control phosphatase, catalytic domain | 0 | DIRECT |
| 2Fe-2S ferredoxin domains from multidomain proteins | 0 | DIRECT |
| Zf-UBP | 0 | DIRECT |
| Cullin repeat | 0 | DIRECT |
| Arrestin/Vps26-like | 0 | DIRECT |
| Prefoldin | 0 | DIRECT |
| MIR domain | 0 | DIRECT |
| Spectrin repeat | 0.05747 | INHERITED FROM: fat cell || enterocyte || copper cell |
| I set domains | 0.1238 | INHERITED FROM: cardioblast || LNv neuron || embryonic/larval lateral glial cell || interface glial cell || visceral muscle fiber || adult descending neuron || pacemaker neuron || mechanosensory system neuron || gustatory system neuron || adult pacemaker neuron || gustatory receptor neuron || embryonic heart cardioblast || s-LNv neuron || larval abdominal sensory neuron || embryonic cardioblast || embryonic somatic muscle || leg taste bristle chemosensory neuron |
| Calponin-homology domain, CH-domain | 0.128 | INHERITED FROM: indirect flight muscle || flight muscle |
| Homeodomain | 0.1454 | INHERITED FROM: thoracic neuroblast || ventral intersegmental muscle || hypodermal muscle of prothorax || dorsal margin photoreceptor || interneuron || maxillary palp olfactory receptor neuron || EL neuron || A1-7 ventral acute muscle 1 || uniglomerular antennal lobe projection neuron || embryonic/larval neuron || prothoracic ventral intersegmental muscle || U neuron || embryonic neuroblast |
| Transducin (alpha subunit), insertion domain | 0.1493 | INHERITED FROM: eo neuron |
| PDZ domain | 0.1579 | INHERITED FROM: somatic cell of ovariole |
| ZZ domain | 0.2053 | INHERITED FROM: skeletal muscle of mesothorax || indirect flight muscle || adult somatic muscle || skeletal muscle of thorax || flight muscle |
| Fibronectin type III | 0.2687 | INHERITED FROM: LNv neuron || LN period neuron || pacemaker neuron || adult pacemaker neuron || gustatory receptor neuron || embryonic heart cardioblast || s-LNv neuron |
| Cadherin | 0.2696 | INHERITED FROM: outer photoreceptor cell || photoreceptor cell R4 |
| PLC-like (P variant) | 0.2696 | INHERITED FROM: larval dorsal multidendritic neuron ddaC || head mesoderm derived embryonic hemocyte || larval dorsal multidendritic neuron |
| HLH, helix-loop-helix DNA-binding domain | 0.2795 | INHERITED FROM: EL neuron || 5-6I of thorax || sensory mother cell |
| Cap-Gly domain | 0.2811 | INHERITED FROM: interneuron |
| Choline/Carnitine O-acyltransferase | 0.2811 | INHERITED FROM: skeletal muscle of mesothorax || adult somatic muscle || skeletal muscle of thorax || somatic muscle || flight muscle |
| Protein kinases, catalytic subunit | 0.2919 | INHERITED FROM: photoreceptor cell R8 of pale ommatidium || intestinal stem cell || somatic cell of ovariole |
| Ankyrin repeat | 0.3577 | INHERITED FROM: ventral multidendritic neuron || Johnston organ neuron |
| Paired domain | 0.37 | INHERITED FROM: RP2 motor neuron || EG neuron || EL neuron || U neuron |
| Caspase catalytic domain | 0.4324 | INHERITED FROM: peptidergic neuron |
| EGF-type module | 0.475 | INHERITED FROM: adult midgut progenitor cell || pigment cell || dorsal acute muscle || head mesoderm derived embryonic hemocyte || embryonic pericardial cell || hub cell |
| Cytochrome P450 | 0.5379 | INHERITED FROM: embryonic/larval glial cell || midline glial cell || CNS glial cell || neuropil associated CNS glial cell || larval neuropil glial cell || larval VNC neuropil glial cell |
| Nuclear receptor | 0.5896 | INHERITED FROM: interneuron || mushroom body intrinsic neuron || supraesophageal ganglion neuron |
| Nuclear receptor ligand-binding domain | 0.5978 | INHERITED FROM: interneuron || mushroom body intrinsic neuron || supraesophageal ganglion neuron |
| Growth factor receptor domain | 0.6217 | INHERITED FROM: somatic cell of testis || embryonic hemocyte || head mesoderm derived embryonic hemocyte |
| G proteins | 0.6582 | INHERITED FROM: hemocyte |
| SH2 domain | 0.6858 | INHERITED FROM: rhabdomeric photoreceptor cell || photoreceptor cell || adult optic lobe neuron || sensory organ cell || cyst progenitor cell || photoreceptor cell R7 || histaminergic neuron |
| Hairy Orange domain | 0.7078 | INHERITED FROM: EG neuron || EL neuron |
| Phoshoinositide 3-kinase (PI3K), catalytic domain | 0.7247 | INHERITED FROM: intestinal stem cell |
| FYVE, a phosphatidylinositol-3-phosphate binding domain | 0.7628 | INHERITED FROM: garland cell || embryonic/larval garland cell |
| Forkhead DNA-binding domain | 0.8672 | INHERITED FROM: RP2sib neuron |
| Ubiquitin-related | 0.928 | INHERITED FROM: mushroom body extrinsic neuron |
| Tubulin, GTPase domain | 0.9503 | INHERITED FROM: type II neuroblast || fat cell || type I neuroblast |
| Tubulin, C-terminal domain | 0.9704 | INHERITED FROM: type II neuroblast || fat cell || type I neuroblast |
| Classic zinc finger, C2H2 | 1 | INHERITED FROM: embryonic ganglion mother cell |
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Myb/SANT domain | 0 | Direct |
| RNase III catalytic domain-like | 0 | Direct |
| Laminin G-like module | 0 | Direct |
| Isoprenyl diphosphate synthases | 0 | Direct |
| Eps15 homology domain (EH domain) | 0 | Direct |
| Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta | 0 | Direct |
| CAD domain | 0 | Direct |
| Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 0 | Direct |
| Rel/Dorsal transcription factors, DNA-binding domain | 0 | Direct |
| CoA-binding domain | 0 | Direct |
| Nitrogenase iron protein-like | 0 | Direct |
| Anticodon-binding domain of Class II aaRS | 0 | Direct |
| DNA polymerase III clamp loader subunits, C-terminal domain | 0 | Direct |
| SCF ubiquitin ligase complex WHB domain | 0 | Direct |
| Fibroblast growth factors (FGF) | 0 | Direct |
| Metal cation-transporting ATPase, ATP-binding domain N | 0 | Direct |
| Frizzled cysteine-rich domain | 0 | Direct |
| Group II chaperonin (CCT, TRIC), intermediate domain | 0 | Direct |
| SMAD MH1 domain | 0 | Direct |
| Cullin homology domain | 0 | Direct |
| Sec1/munc18-like (SM) proteins | 0 | Direct |
| Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain | 0 | Direct |
| beta-CASP RNA-metabolising hydrolases | 0 | Direct |
| Tropomyosin | 0 | Direct |
| Diacylglycerol kinase-like | 0 | Direct |
| NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain | 0 | Direct |
| Plexin repeat | 0 | Direct |
| Pointed domain | 0 | Direct |
| Inositol polyphosphate 5-phosphatase (IPP5) | 0 | Direct |
| Extracellular domain of cell surface receptors | 0 | Direct |
| Histone deacetylase, HDAC | 0 | Direct |
| Transforming growth factor (TGF)-beta | 0 | Direct |
| Sema domain | 0 | Direct |
| Laminin-type module | 0 | Direct |
| POU-specific domain | 0 | Direct |
| Tetramerization domain of potassium channels | 0 | Direct |
| Armadillo repeat | 0 | Direct |
| Mob1/phocein | 0 | Direct |
| Smc hinge domain | 0 | Direct |
| SAP domain | 0 | Direct |
| Integrin domains | 0 | Direct |
| Cell cycle control phosphatase, catalytic domain | 0 | Direct |
| 2Fe-2S ferredoxin domains from multidomain proteins | 0 | Direct |
| Zf-UBP | 0 | Direct |
| Cullin repeat | 0 | Direct |
| Arrestin/Vps26-like | 0 | Direct |
| Prefoldin | 0 | Direct |
| MIR domain | 0 | Direct |
| Spectrin repeat | 0.05747 | Inherited |
| I set domains | 0.1238 | Inherited |
| Calponin-homology domain, CH-domain | 0.128 | Inherited |
| Homeodomain | 0.1454 | Inherited |
| Transducin (alpha subunit), insertion domain | 0.1493 | Inherited |
| PDZ domain | 0.1579 | Inherited |
| ZZ domain | 0.2053 | Inherited |
| Fibronectin type III | 0.2687 | Inherited |
| Cadherin | 0.2696 | Inherited |
| PLC-like (P variant) | 0.2696 | Inherited |
| HLH, helix-loop-helix DNA-binding domain | 0.2795 | Inherited |
| Cap-Gly domain | 0.2811 | Inherited |
| Choline/Carnitine O-acyltransferase | 0.2811 | Inherited |
| Protein kinases, catalytic subunit | 0.2919 | Inherited |
| Ankyrin repeat | 0.3577 | Inherited |
| Paired domain | 0.37 | Inherited |
| Caspase catalytic domain | 0.4324 | Inherited |
| EGF-type module | 0.475 | Inherited |
| Cytochrome P450 | 0.5379 | Inherited |
| Nuclear receptor | 0.5896 | Inherited |
| Nuclear receptor ligand-binding domain | 0.5978 | Inherited |
| Growth factor receptor domain | 0.6217 | Inherited |
| G proteins | 0.6582 | Inherited |
| SH2 domain | 0.6858 | Inherited |
| Hairy Orange domain | 0.7078 | Inherited |
| Phoshoinositide 3-kinase (PI3K), catalytic domain | 0.7247 | Inherited |
| FYVE, a phosphatidylinositol-3-phosphate binding domain | 0.7628 | Inherited |
| Forkhead DNA-binding domain | 0.8672 | Inherited |
| Ubiquitin-related | 0.928 | Inherited |
| Tubulin, GTPase domain | 0.9503 | Inherited |
| Tubulin, C-terminal domain | 0.9704 | Inherited |
| Classic zinc finger, C2H2 | 1 | Inherited |
LINKTO: Domain2BO Download and Domain2BO Algorithm
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Supra-domain (Single)( show details)
Highlighted in gray are those with FDR>0.001
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Duplex) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
57903,47370 57903 - FYVE/PHD zinc finger 47370 - Bromodomain | 0 | DIRECT |
49417,81296 49417 - p53-like transcription factors 81296 - E set domains | 0 | DIRECT |
55753,55753 55753 - Actin depolymerizing proteins 55753 - Actin depolymerizing proteins | 0 | DIRECT |
47413,46689 47413 - lambda repressor-like DNA-binding domains 46689 - Homeodomain-like | 0 | DIRECT |
74788,75632 74788 - Cullin repeat-like 75632 - Cullin homology domain | 0 | DIRECT |
57196,49899 57196 - EGF/Laminin 49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
81296,81296 81296 - E set domains 81296 - E set domains | 0 | DIRECT |
54534,48452 54534 - FKBP-like 48452 - TPR-like | 0 | DIRECT |
46966,46966 46966 - Spectrin repeat 46966 - Spectrin repeat | 0 | DIRECT |
49899,49899 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
48403,48403 48403 - Ankyrin repeat 48403 - Ankyrin repeat | 0 | DIRECT |
101912,103575 101912 - Sema domain 103575 - Plexin repeat | 0 | DIRECT |
75632,46785 75632 - Cullin homology domain 46785 - "Winged helix" DNA-binding domain | 0 | DIRECT |
52540,48019 52540 - P-loop containing nucleoside triphosphate hydrolases 48019 - post-AAA+ oligomerization domain-like | 0 | DIRECT |
47459,55785 47459 - HLH, helix-loop-helix DNA-binding domain 55785 - PYP-like sensor domain (PAS domain) | 0 | DIRECT |
49899,57196 49899 - Concanavalin A-like lectins/glucanases 57196 - EGF/Laminin | 0 | DIRECT |
47220,47220 47220 - alpha-catenin/vinculin-like 47220 - alpha-catenin/vinculin-like | 0 | DIRECT |
81660,56784 81660 - Metal cation-transporting ATPase, ATP-binding domain N 56784 - HAD-like | 0 | DIRECT |
48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin | 0.04026 | INHERITED FROM: pacemaker neuron || interommatidial precursor cell || adult pacemaker neuron || LNv neuron || cardioblast || longitudinal muscle || embryonic cardioblast || embryonic somatic muscle || s-LNv neuron || LN period neuron || embryonic heart cardioblast || leg taste bristle chemosensory neuron |
47895,52540 47895 - Transducin (alpha subunit), insertion domain 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.1416 | INHERITED FROM: eo neuron |
49313,49313 49313 - Cadherin-like 49313 - Cadherin-like | 0.2557 | INHERITED FROM: photoreceptor cell R4 || outer photoreceptor cell |
49562,49562 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) | 0.2724 | INHERITED FROM: bouton || synapse |
52777,52777 52777 - CoA-dependent acyltransferases 52777 - CoA-dependent acyltransferases | 0.2724 | INHERITED FROM: flight muscle || adult somatic muscle || skeletal muscle of thorax || skeletal muscle of mesothorax || muscle cell || somatic muscle |
55550,50044 55550 - SH2 domain 50044 - SH3-domain | 0.2724 | INHERITED FROM: photoreceptor cell R7 || inner photoreceptor cell |
48726,49265 48726 - Immunoglobulin 49265 - Fibronectin type III | 0.3221 | INHERITED FROM: pacemaker neuron || gustatory receptor neuron || mechanosensory neuron || adult pacemaker neuron || LNv neuron || chemosensory neuron || giant fiber neuron || chemosensory system neuron || adult descending neuron || neuropil associated CNS glial cell || s-LNv neuron || LN period neuron || embryonic heart cardioblast || leg taste bristle chemosensory neuron |
49265,49265 49265 - Fibronectin type III 49265 - Fibronectin type III | 0.3274 | INHERITED FROM: abdominal neuron || larval abdominal sensory neuron || dendritic arborizing neuron || multidendritic neuron |
50978,50978 50978 - WD40 repeat-like 50978 - WD40 repeat-like | 0.4304 | INHERITED FROM: mechanosensory system neuron || mechanosensory neuron |
47459,158457 47459 - HLH, helix-loop-helix DNA-binding domain 158457 - Orange domain-like | 0.6009 | INHERITED FROM: 5-6I of thorax || 5-6I || EL neuron || EG neuron || thoracic neuron |
47473,47473 47473 - EF-hand 47473 - EF-hand | 0.624 | INHERITED FROM: bouton |
57196,57184 57196 - EGF/Laminin 57184 - Growth factor receptor domain | 0.7309 | INHERITED FROM: head mesoderm derived embryonic hemocyte || photoreceptor cell R7 || pigment cell || inner photoreceptor cell || crystal cell || somatic cell of testis || hub cell || embryonic hemocyte |
57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.7691 | INHERITED FROM: rhabdomeric photoreceptor cell || embryonic/larval pericardial cell || embryonic/larval somatic muscle || sensory organ cell || eye photoreceptor cell stalk || pericardial cell || secondary pigment cell || nephrocyte || hub cell || tertiary pigment cell |
52490,55307 52490 - Tubulin nucleotide-binding domain-like 55307 - Tubulin C-terminal domain-like | 0.9676 | INHERITED FROM: fat cell || type II neuroblast || type I neuroblast |
57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 1 | INHERITED FROM: embryonic ganglion mother cell |
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
57903,47370 57903 - FYVE/PHD zinc finger 47370 - Bromodomain | 0 | Direct |
49417,81296 49417 - p53-like transcription factors 81296 - E set domains | 0 | Direct |
55753,55753 55753 - Actin depolymerizing proteins 55753 - Actin depolymerizing proteins | 0 | Direct |
47413,46689 47413 - lambda repressor-like DNA-binding domains 46689 - Homeodomain-like | 0 | Direct |
74788,75632 74788 - Cullin repeat-like 75632 - Cullin homology domain | 0 | Direct |
57196,49899 57196 - EGF/Laminin 49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
81296,81296 81296 - E set domains 81296 - E set domains | 0 | Direct |
54534,48452 54534 - FKBP-like 48452 - TPR-like | 0 | Direct |
46966,46966 46966 - Spectrin repeat 46966 - Spectrin repeat | 0 | Direct |
49899,49899 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
48403,48403 48403 - Ankyrin repeat 48403 - Ankyrin repeat | 0 | Direct |
101912,103575 101912 - Sema domain 103575 - Plexin repeat | 0 | Direct |
75632,46785 75632 - Cullin homology domain 46785 - "Winged helix" DNA-binding domain | 0 | Direct |
52540,48019 52540 - P-loop containing nucleoside triphosphate hydrolases 48019 - post-AAA+ oligomerization domain-like | 0 | Direct |
47459,55785 47459 - HLH, helix-loop-helix DNA-binding domain 55785 - PYP-like sensor domain (PAS domain) | 0 | Direct |
49899,57196 49899 - Concanavalin A-like lectins/glucanases 57196 - EGF/Laminin | 0 | Direct |
47220,47220 47220 - alpha-catenin/vinculin-like 47220 - alpha-catenin/vinculin-like | 0 | Direct |
81660,56784 81660 - Metal cation-transporting ATPase, ATP-binding domain N 56784 - HAD-like | 0 | Direct |
48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin | 0.04026 | Inherited |
47895,52540 47895 - Transducin (alpha subunit), insertion domain 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.1416 | Inherited |
49313,49313 49313 - Cadherin-like 49313 - Cadherin-like | 0.2557 | Inherited |
49562,49562 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) | 0.2724 | Inherited |
52777,52777 52777 - CoA-dependent acyltransferases 52777 - CoA-dependent acyltransferases | 0.2724 | Inherited |
55550,50044 55550 - SH2 domain 50044 - SH3-domain | 0.2724 | Inherited |
48726,49265 48726 - Immunoglobulin 49265 - Fibronectin type III | 0.3221 | Inherited |
49265,49265 49265 - Fibronectin type III 49265 - Fibronectin type III | 0.3274 | Inherited |
50978,50978 50978 - WD40 repeat-like 50978 - WD40 repeat-like | 0.4304 | Inherited |
47459,158457 47459 - HLH, helix-loop-helix DNA-binding domain 158457 - Orange domain-like | 0.6009 | Inherited |
47473,47473 47473 - EF-hand 47473 - EF-hand | 0.624 | Inherited |
57196,57184 57196 - EGF/Laminin 57184 - Growth factor receptor domain | 0.7309 | Inherited |
57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.7691 | Inherited |
52490,55307 52490 - Tubulin nucleotide-binding domain-like 55307 - Tubulin C-terminal domain-like | 0.9676 | Inherited |
57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 1 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Triple) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
48452,48452,48452 48452 - TPR-like 48452 - TPR-like 48452 - TPR-like | 0 | DIRECT |
57850,57850,57850 57850 - RING/U-box 57850 - RING/U-box 57850 - RING/U-box | 0 | DIRECT |
81296,81296,81296 81296 - E set domains 81296 - E set domains 81296 - E set domains | 0 | DIRECT |
81660,56784,81665 81660 - Metal cation-transporting ATPase, ATP-binding domain N 56784 - HAD-like 81665 - Calcium ATPase, transmembrane domain M | 0 | DIRECT |
74788,75632,46785 74788 - Cullin repeat-like 75632 - Cullin homology domain 46785 - "Winged helix" DNA-binding domain | 0 | DIRECT |
46966,46966,46966 46966 - Spectrin repeat 46966 - Spectrin repeat 46966 - Spectrin repeat | 0 | DIRECT |
57716,57716,57716 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) | 0 | DIRECT |
57196,49899,49899 57196 - EGF/Laminin 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
49899,49899,49899 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
57196,57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.01863 | INHERITED FROM: rhabdomeric photoreceptor cell || embryonic/larval pericardial cell || head mesoderm derived embryonic hemocyte || adult optic lobe neuron || embryonic/larval somatic muscle || sensory neuron || embryonic/larval hypodermal muscle || sensory organ cell || eye photoreceptor cell stalk || pericardial cell || histaminergic neuron || glial cell || secondary pigment cell || nephrocyte || photoreceptor cell R6 || somatic cell of testis || hub cell || photoreceptor cell R1 || embryonic hemocyte || tertiary pigment cell |
48726,48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin 48726 - Immunoglobulin | 0.1628 | INHERITED FROM: pacemaker neuron || interommatidial precursor cell || gustatory receptor neuron || adult pacemaker neuron || LNv neuron || embryonic cardioblast || embryonic/larval garland cell || s-LNv neuron || interneuron || embryonic heart cardioblast || leg taste bristle chemosensory neuron |
48726,48726,49265 48726 - Immunoglobulin 48726 - Immunoglobulin 49265 - Fibronectin type III | 0.1668 | INHERITED FROM: mechanosensory system neuron || pacemaker neuron || gustatory receptor neuron || mechanosensory neuron || adult pacemaker neuron || LNv neuron || chemosensory neuron || giant fiber neuron || eo neuron || chemosensory system neuron || adult descending neuron || neuropil associated CNS glial cell || s-LNv neuron || LN period neuron || embryonic heart cardioblast || leg taste bristle chemosensory neuron |
49313,49313,49313 49313 - Cadherin-like 49313 - Cadherin-like 49313 - Cadherin-like | 0.2557 | INHERITED FROM: photoreceptor cell R4 || outer photoreceptor cell |
57667,57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 1 | INHERITED FROM: embryonic ganglion mother cell |
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
48452,48452,48452 48452 - TPR-like 48452 - TPR-like 48452 - TPR-like | 0 | Direct |
57850,57850,57850 57850 - RING/U-box 57850 - RING/U-box 57850 - RING/U-box | 0 | Direct |
81296,81296,81296 81296 - E set domains 81296 - E set domains 81296 - E set domains | 0 | Direct |
81660,56784,81665 81660 - Metal cation-transporting ATPase, ATP-binding domain N 56784 - HAD-like 81665 - Calcium ATPase, transmembrane domain M | 0 | Direct |
74788,75632,46785 74788 - Cullin repeat-like 75632 - Cullin homology domain 46785 - "Winged helix" DNA-binding domain | 0 | Direct |
46966,46966,46966 46966 - Spectrin repeat 46966 - Spectrin repeat 46966 - Spectrin repeat | 0 | Direct |
57716,57716,57716 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) | 0 | Direct |
57196,49899,49899 57196 - EGF/Laminin 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
49899,49899,49899 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases 49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
57196,57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.01863 | Inherited |
48726,48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin 48726 - Immunoglobulin | 0.1628 | Inherited |
48726,48726,49265 48726 - Immunoglobulin 48726 - Immunoglobulin 49265 - Fibronectin type III | 0.1668 | Inherited |
49313,49313,49313 49313 - Cadherin-like 49313 - Cadherin-like 49313 - Cadherin-like | 0.2557 | Inherited |
57667,57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 1 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Plot distribution on species Tree Of Life (sTOL) for Superfamily and/or Family domains annotated by this FA term
 |
Plot tree as:
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Download Newick format tree:
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( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domain
architecture data for all genomes in SUPERFAMILY. The PAUP
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Plot distribution on species Tree Of Life (sTOL) for single supra-domains annotated by this FA term
 |
Plot tree as:
| |
Download Newick format tree:
| |
Browsing in TREE OF LIFE:
|
( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
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