Plant ANatomical entity (PAN): petiole 

Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children)	AP term [AP ID] <#Children>	#Domains (Superfamily|Family)	#Supra-domain (Single|Duplex|Triple)
+ + + + + + 6:	collective plant structure [PO:0025497] <2>	(568|768)	(570|338|104)
+ + + + + 5:	plant anatomical entity [PO:0025131] <3>
+ + + + + 5:	collective plant organ structure [PO:0025007] <7>	(531|726)	(533|315|98)
+ + + + 4:	shoot system [PO:0009006] <18>	(516|705)	(517|311|98)
+ + + + 4:	multi-tissue plant structure [PO:0025496] <4>	(317|465)	(320|215|71)
+ + + + 4:	plant structure [PO:0009011] <13>	(589|796)	(590|352|108)
+ + + 3:	plant organ [PO:0009008] <10>	(308|459)	(311|212|70)
+ + + 3:	phyllome [PO:0006001] <21>	(245|378)	(249|183|65)
+ + + 3:	cardinal part of multi-tissue plant structure [PO:0025498] <8>	(185|291)	(186|132|50)
+ + 2:	cardinal organ part [PO:0025001] <61>	(182|290)	(183|132|50)
+ + 2:	leaf [PO:0025034] <12>	(184|297)	(186|141|53)
+ 1:	stalk [PO:0025066] <10>	(117|192)	(119|84|34)
+ 1:	vascular leaf [PO:0009025] <36>	(176|291)	(178|140|53)
0:	petiole [PO:0020038] <11>	(110|183)	(111|81|34)
- 1:	petiole canal [PO:0025133] <2>	(0|0)	(0|0|0)
- 1:	petiole epidermis [PO:0000051] <2>	(0|0)	(0|0|0)
- 1:	petiole lamina [PO:0025129] <1>	(0|0)	(0|0|0)
- 1:	central zone of the petiole [PO:0008025]	(0|0)	(0|0|0)
- 1:	petiole cortex [PO:0000053]	(0|0)	(0|0|0)
- 1:	petiole distal end [PO:0008026]	(0|0)	(0|0|0)
- 1:	petiole parenchyma [PO:0006066]	(0|0)	(0|0|0)
- 1:	petiole proximal end [PO:0008024]	(0|0)	(0|0|0)
- 1:	petiole pulvinus [PO:0009111]	(0|0)	(0|0|0)
- 1:	petiole stomatal complex [PO:0025189]	(0|0)	(0|0|0)
- 1:	petiole vascular system [PO:0000052]	(0|0)	(0|0|0)

Superfamily

Highlighted in gray are those with FDR_all>0.001

SCOP term	FDR (all)	Annotation (direct or inherited)
E2F-DP heterodimerization region	0	DIRECT
SH3-domain	0	DIRECT
RraA-like	0	DIRECT
Lipocalins	0	DIRECT
LysM domain	0	DIRECT
Head domain of nucleotide exchange factor GrpE	0	DIRECT
TATA-box binding protein-like	0	DIRECT
Composite domain of metallo-dependent hydrolases	0	DIRECT
Ribosomal L11/L12e N-terminal domain	0	DIRECT
C-terminal, gelsolin-like domain of Sec23/24	0	DIRECT
Ribosomal protein L30p/L7e	0	DIRECT
tRNA-binding arm	0	DIRECT
LeuD/IlvD-like	0	DIRECT
Ribosomal protein L31e	0	DIRECT
Phosphoglycerate kinase	0	DIRECT
lambda repressor-like DNA-binding domains	0	DIRECT
Creatinase/aminopeptidase	0	DIRECT
N-terminal, heterodimerisation domain of RBP7 (RpoE)	0	DIRECT
Putative isomerase YbhE	0	DIRECT
YrdC/RibB	0	DIRECT
Tautomerase/MIF	0	DIRECT
Transducin (alpha subunit), insertion domain	0	DIRECT
Tetrapyrrole methylase	0	DIRECT
Ribosomal protein L4	0	DIRECT
Electron transport accessory proteins	0	DIRECT
P-domain of calnexin/calreticulin	0	DIRECT
Chelatase	0	DIRECT
FKBP-like	0	DIRECT
Mitochondrial glycoprotein MAM33-like	0	DIRECT
Preprotein translocase SecE subunit	0	DIRECT
Sigma3 and sigma4 domains of RNA polymerase sigma factors	0	DIRECT
Prokaryotic type I DNA topoisomerase	0	DIRECT
Zn-finger domain of Sec23/24	0	DIRECT
Pentapeptide repeat-like	0	DIRECT
BolA-like	0	DIRECT
RuBisCo LSMT C-terminal, substrate-binding domain	0	DIRECT
Ribosomal protein L19 (L19e)	0	DIRECT
Folate-binding domain	0	DIRECT
Expressed protein At2g23090/F21P24.15	0	DIRECT
Glycolipid transfer protein, GLTP	0	DIRECT
Ribosomal protein L39e	0	DIRECT
Hypothetical protein YjiA, C-terminal domain	0	DIRECT
Metallo-dependent hydrolases	0	DIRECT
LuxS/MPP-like metallohydrolase	0	DIRECT
Cu,Zn superoxide dismutase-like	0	DIRECT
Leukotriene A4 hydrolase N-terminal domain	0	DIRECT
AMPKBI-like	0	DIRECT
Inosine monophosphate dehydrogenase (IMPDH)	0	DIRECT
Ribosomal protein L13	0	DIRECT
Phosphoglucomutase, C-terminal domain	0	DIRECT
Chorismate mutase II	0	DIRECT
N-terminal domain of the delta subunit of the F1F0-ATP synthase	0	DIRECT
Ligand-binding domain in the NO signalling and Golgi transport	0	DIRECT
Phosphoglucomutase, first 3 domains	0	DIRECT
GlnB-like	0	DIRECT
Serine metabolism enzymes domain	0	DIRECT
FAH	0	DIRECT
Sigma2 domain of RNA polymerase sigma factors	0	DIRECT
Ribosomal protein L10-like	0	DIRECT
Diaminopimelate epimerase-like	0	DIRECT
S13-like H2TH domain	0	DIRECT
Ribosomal protein S2	0	DIRECT
Preprotein translocase SecY subunit	0	DIRECT
DNA repair protein MutS, domain II	0	DIRECT
Tetrahydrobiopterin biosynthesis enzymes-like	0	DIRECT
Ribosomal protein L16p/L10e	0	DIRECT
ssDNA-binding transcriptional regulator domain	0	DIRECT
GroEL-intermediate domain like	0	DIRECT
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	0	DIRECT
Cytochrome c	0	DIRECT
Nicotinate/Quinolinate PRTase C-terminal domain-like	0	DIRECT
Casein kinase II beta subunit	0	DIRECT
Aconitase iron-sulfur domain	0	DIRECT
eIF1-like	0	DIRECT
Seven-hairpin glycosidases	0	DIRECT
Succinyl-CoA synthetase domains	0	DIRECT
CYTH-like phosphatases	0	DIRECT
alpha-helical ferredoxin	0	DIRECT
R3H domain	0	DIRECT
Peptide methionine sulfoxide reductase	0	DIRECT
Oxidoreductase molybdopterin-binding domain	0	DIRECT
Prokaryotic ribosomal protein L17	0	DIRECT
MurD-like peptide ligases, catalytic domain	0	DIRECT
Creatinase/prolidase N-terminal domain	0	DIRECT
Ribosomal protein S6	0	DIRECT
Nitrite and sulphite reductase 4Fe-4S domain-like	0	DIRECT
MurD-like peptide ligases, peptide-binding domain	0	DIRECT
Ribosomal proteins S24e, L23 and L15e	0	DIRECT
Ribosomal protein L29 (L29p)	0	DIRECT
ATP synthase (F1-ATPase), gamma subunit	0	DIRECT
Lipoxigenase	0	DIRECT
SIS domain	0	DIRECT
Ribosomal protein L14	0	DIRECT
NSFL1 (p97 ATPase) cofactor p47, SEP domain	0	DIRECT
Cryptochrome/photolyase FAD-binding domain	0	DIRECT
UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	0	DIRECT
Alpha subunit of glutamate synthase, C-terminal domain	0	DIRECT
S-adenosylmethionine synthetase	0	DIRECT
Tim10-like	0	DIRECT
Helical domain of Sec23/24	0	DIRECT
Nicotinate/Quinolinate PRTase N-terminal domain-like	0	DIRECT
RibA-like	0	DIRECT
NHL repeat	0	DIRECT
HesB-like domain	0	DIRECT
Heme-dependent catalase-like	0	DIRECT
Coiled-coil domain of nucleotide exchange factor GrpE	0	DIRECT
Dimeric alpha+beta barrel	0	DIRECT
XPC-binding domain	0	DIRECT
RNA-binding domain, RBD	0.0000001031	DIRECT
FtsH protease domain-like	0.00007492	DIRECT

Family

Highlighted in gray are those with FDR_all>0.001

SCOP term	FDR (all)	Annotation (direct or inherited)
GroEL-like chaperone, apical domain	0	DIRECT
N-terminal, heterodimerisation domain of RBP7 (RpoE)	0	DIRECT
Phosphoglucomutase, C-terminal domain	0	DIRECT
Pseudouridine synthase II TruB	0	DIRECT
Heme-dependent catalases	0	DIRECT
AMPKBI-like	0	DIRECT
Plant lipoxigenases	0	DIRECT
Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain	0	DIRECT
Lipoxigenase N-terminal domain	0	DIRECT
DNase I-like	0	DIRECT
gamma-carbonic anhydrase-like	0	DIRECT
Aminomethyltransferase folate-binding domain	0	DIRECT
Sigma4 domain	0	DIRECT
LeuD-like	0	DIRECT
Prolyl oligopeptidase, N-terminal domain	0	DIRECT
Allosteric chorismate mutase	0	DIRECT
Tim10/DDP	0	DIRECT
G domain-linked domain	0	DIRECT
ATP synthase (F1-ATPase), gamma subunit	0	DIRECT
NSFL1 (p97 ATPase) cofactor p47, SEP domain	0	DIRECT
Trunk domain of Sec23/24	0	DIRECT
RWD domain	0	DIRECT
CoA-binding domain	0	DIRECT
PAPS reductase-like	0	DIRECT
Spermidine synthase	0	DIRECT
Ribosomal protein L29 (L29p)	0	DIRECT
MPP-like	0	DIRECT
Leukotriene A4 hydrolase N-terminal domain	0	DIRECT
Ribosomal protein L4	0	DIRECT
Homoserine dehydrogenase-like	0	DIRECT
Group II chaperonin (CCT, TRIC), intermediate domain	0	DIRECT
HAT/Suf repeat	0	DIRECT
UDP-glucose pyrophosphorylase	0	DIRECT
3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB	0	DIRECT
Coiled-coil domain of nucleotide exchange factor GrpE	0	DIRECT
Reductases	0	DIRECT
E2F dimerization segment	0	DIRECT
Rps19E-like	0	DIRECT
beta-Phosphoglucomutase-like	0	DIRECT
S-adenosylmethionine synthetase	0	DIRECT
ZZ domain	0	DIRECT
Methionine aminopeptidase, insert domain	0	DIRECT
GABARAP-like	0	DIRECT
Nitrite and sulphite reductase 4Fe-4S domain-like	0	DIRECT
Transcriptional coactivator PC4 C-terminal domain	0	DIRECT
Mitochondrial glycoprotein MAM33-like	0	DIRECT
HesB-like domain	0	DIRECT
GAF domain	0	DIRECT
L23p	0	DIRECT
C-terminal, gelsolin-like domain of Sec23/24	0	DIRECT
Starch-binding domain	0	DIRECT
Aconitase iron-sulfur domain	0	DIRECT
Myf domain	0	DIRECT
FAH	0	DIRECT
Plant stress-induced protein	0	DIRECT
Ribosomal protein S6	0	DIRECT
Ribosomal protein S13	0	DIRECT
Hypothetical protein HI1317	0	DIRECT
Ubiquitin carboxyl-terminal hydrolase UCH-L	0	DIRECT
Ribosomal protein L30p/L7e	0	DIRECT
Ribosomal L11/L12e N-terminal domain	0	DIRECT
SH3-domain	0	DIRECT
LysM domain	0	DIRECT
Cryptochrome/photolyase FAD-binding domain	0	DIRECT
NOL1/NOP2/sun	0	DIRECT
R3H domain	0	DIRECT
Cytidylyltransferase	0	DIRECT
HEAT repeat	0	DIRECT
Succinyl-CoA synthetase, beta-chain, N-terminal domain	0	DIRECT
RraA-like	0	DIRECT
Ribosomal protein S27e	0	DIRECT
Ribosomal protein L10e	0	DIRECT
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	0	DIRECT
RibA-like	0	DIRECT
Cystatins	0	DIRECT
BolA-like	0	DIRECT
Ribosomal protein S15	0	DIRECT
LON domain-like	0	DIRECT
Rubredoxin	0	DIRECT
Transducin (alpha subunit), insertion domain	0	DIRECT
ATP sulfurylase N-terminal domain	0	DIRECT
MIF-related	0	DIRECT
Ran-binding domain	0	DIRECT
Creatinase/aminopeptidase	0	DIRECT
Class-II DAHP synthetase	0	DIRECT
Prokaryotic ribosomal protein L17	0	DIRECT
Eps15 homology domain (EH domain)	0	DIRECT
SerA intervening domain-like	0	DIRECT
Ring hydroxylating alpha subunit ISP domain	0	DIRECT
Receiver domain of the ethylene receptor	0	DIRECT
Sigma2 domain of RNA polymerase sigma factors	0	DIRECT
Ribosomal protein L13	0	DIRECT
Casein kinase II beta subunit	0	DIRECT
Clp protease, ClpP subunit	0	DIRECT
Preprotein translocase SecE subunit	0	DIRECT
Choline kinase	0	DIRECT
Inosine monophosphate dehydrogenase (IMPDH)	0	DIRECT
RNB domain-like	0	DIRECT
Cu,Zn superoxide dismutase-like	0	DIRECT
5' nucleotidase-like	0	DIRECT
6-phosphogluconate dehydrogenase-like, N-terminal domain	0	DIRECT
MYND zinc finger	0	DIRECT
Acyl-ACP thioesterase-like	0	DIRECT
Oxidoreductase molybdopterin-binding domain	0	DIRECT
Ribosomal protein L14	0	DIRECT
P-domain of calnexin/calreticulin	0	DIRECT
Dihydrodipicolinate reductase-like	0	DIRECT
Enolase	0	DIRECT
NadC N-terminal domain-like	0	DIRECT
RNase Z-like	0	DIRECT
RuBisCo LSMT C-terminal, substrate-binding domain	0	DIRECT
AMPK-beta glycogen binding domain-like	0	DIRECT
Tail specific protease, catalytic domain	0	DIRECT
Glyoxalase I (lactoylglutathione lyase)	0	DIRECT
Folylpolyglutamate synthetase	0	DIRECT
Sec63 C-terminal domain-like	0	DIRECT
RelA/SpoT domain	0	DIRECT
Glycolipid transfer protein, GLTP	0	DIRECT
GroES	0	DIRECT
Alpha subunit of glutamate synthase, C-terminal domain	0	DIRECT
Class I alpha-1;2-mannosidase, catalytic domain	0	DIRECT
Smc hinge domain	0	DIRECT
Succinyl-CoA synthetase domains	0	DIRECT
Cdc48 N-terminal domain-like	0	DIRECT
monodomain cytochrome c	0	DIRECT
Peptide methionine sulfoxide reductase	0	DIRECT
GroEL-like chaperone, intermediate domain	0	DIRECT
LEA14-like	0	DIRECT
Group II chaperonin (CCT, TRIC), ATPase domain	0	DIRECT
Zn-finger domain of Sec23/24	0	DIRECT
N-type ATP pyrophosphatases	0	DIRECT
IPP isomerase-like	0	DIRECT
D-ribulose-5-phosphate 3-epimerase	0	DIRECT
NadC C-terminal domain-like	0	DIRECT
2Fe-2S ferredoxin-related	0	DIRECT
Sedlin (SEDL)	0	DIRECT
Head domain of nucleotide exchange factor GrpE	0	DIRECT
Ribosomal protein L3	0	DIRECT
Plant transcriptional regulator PBF-2	0	DIRECT
Ribosomal protein L10-like	0	DIRECT
Ribosomal protein L19 (L19e)	0	DIRECT
Poly(ADP-ribose) polymerase, C-terminal domain	0	DIRECT
NHL repeat	0	DIRECT
CAT-like	0	DIRECT
Anti-sigma factor antagonist SpoIIaa	0	DIRECT
Ribosomal protein L39e	0	DIRECT
Class I aldolase	0	DIRECT
Molybdenum-containing oxidoreductases-like dimerisation domain	0	DIRECT
Calnexin/calreticulin	0	DIRECT
UDP-glucose/GDP-mannose dehydrogenase dimerisation domain	0	DIRECT
WrbA-like	0	DIRECT
GroEL chaperone, ATPase domain	0	DIRECT
Hypothetical protein YjiA, C-terminal domain	0	DIRECT
BphP N-terminal domain-like	0	DIRECT
eIF1-like	0	DIRECT
PhzC/PhzF-like	0	DIRECT
Prokaryotic type I DNA topoisomerase	0	DIRECT
ATP sulfurylase catalytic domain	0	DIRECT
PUA domain	0	DIRECT
PCI domain (PINT motif)	0	DIRECT
UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	0	DIRECT
N-acetyl-l-glutamate kinase	0	DIRECT
HAL/PAL-like	0	DIRECT
Phytochrome-specific domain	0	DIRECT
Ribosomal protein L37e	0	DIRECT
EDF1-like	0	DIRECT
Ribosomal protein S2	0	DIRECT
Glyoxalase II (hydroxyacylglutathione hydrolase)	0	DIRECT
Pentapeptide repeats	0	DIRECT
Tetrapyrrole methylase	0	DIRECT
FKBP immunophilin/proline isomerase	0	DIRECT
XPC-binding domain	0	DIRECT
Phosphoglucomutase, first 3 domains	0	DIRECT
beta-sandwich domain of Sec23/24	0	DIRECT
Phosphoglycerate kinase	0	DIRECT
Helical domain of Sec23/24	0	DIRECT
Ribosomal protein L31e	0	DIRECT
Preprotein translocase SecY subunit	0	DIRECT
Leukotriene A4 hydrolase catalytic domain	0	DIRECT
Sec63 N-terminal domain	0	DIRECT
YicI N-terminal domain-like	0	DIRECT
Canonical RBD	0.000001682	DIRECT
FtsH protease domain-like	0.0001241	DIRECT

Supra-domain (Single|Duplex|Triple)

Supra-domain (Single)

Highlighted in gray are those with FDR>0.001

Supra-domain (Single)	FDR (all)	Annotation (direct or inherited)
Ribosomal protein L31e	0	DIRECT
S-adenosylmethionine synthetase	0	DIRECT
Preprotein translocase SecY subunit	0	DIRECT
Succinyl-CoA synthetase domains	0	DIRECT
Ribosomal protein L4	0	DIRECT
Ribosomal protein S2	0	DIRECT
Ribosomal protein L16p/L10e	0	DIRECT
Ribosomal protein L39e	0	DIRECT
RuBisCo LSMT C-terminal, substrate-binding domain	0	DIRECT
ATP synthase (F1-ATPase), gamma subunit	0	DIRECT
Nicotinate/Quinolinate PRTase N-terminal domain-like	0	DIRECT
Helical domain of Sec23/24	0	DIRECT
Sigma2 domain of RNA polymerase sigma factors	0	DIRECT
Transducin (alpha subunit), insertion domain	0	DIRECT
R3H domain	0	DIRECT
alpha-helical ferredoxin	0	DIRECT
Lipoxigenase	0	DIRECT
Creatinase/aminopeptidase	0	DIRECT
Inosine monophosphate dehydrogenase (IMPDH)	0	DIRECT
Nicotinate/Quinolinate PRTase C-terminal domain-like	0	DIRECT
Putative isomerase YbhE	0	DIRECT
LeuD/IlvD-like	0	DIRECT
Electron transport accessory proteins	0	DIRECT
Glycolipid transfer protein, GLTP	0	DIRECT
Creatinase/prolidase N-terminal domain	0	DIRECT
Prokaryotic ribosomal protein L17	0	DIRECT
LysM domain	0	DIRECT
Chelatase	0	DIRECT
Cu,Zn superoxide dismutase-like	0	DIRECT
UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	0	DIRECT
Ribosomal protein L13	0	DIRECT
FKBP-like	0	DIRECT
SH3-domain	0	DIRECT
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	0	DIRECT
Casein kinase II beta subunit	0	DIRECT
Nitrite and sulphite reductase 4Fe-4S domain-like	0	DIRECT
Ribosomal protein L19 (L19e)	0	DIRECT
Dimeric alpha+beta barrel	0	DIRECT
HesB-like domain	0	DIRECT
GlnB-like	0	DIRECT
Coiled-coil domain of nucleotide exchange factor GrpE	0	DIRECT
C-terminal, gelsolin-like domain of Sec23/24	0	DIRECT
Pentapeptide repeat-like	0	DIRECT
lambda repressor-like DNA-binding domains	0	DIRECT
N-terminal domain of the delta subunit of the F1F0-ATP synthase	0	DIRECT
N-terminal, heterodimerisation domain of RBP7 (RpoE)	0	DIRECT
Cytochrome c	0	DIRECT
SIS domain	0	DIRECT
Oxidoreductase molybdopterin-binding domain	0	DIRECT
Folate-binding domain	0	DIRECT
Prokaryotic type I DNA topoisomerase	0	DIRECT
Hypothetical protein YjiA, C-terminal domain	0	DIRECT
NSFL1 (p97 ATPase) cofactor p47, SEP domain	0	DIRECT
CYTH-like phosphatases	0	DIRECT
Peptide methionine sulfoxide reductase	0	DIRECT
Leukotriene A4 hydrolase N-terminal domain	0	DIRECT
Tetrapyrrole methylase	0	DIRECT
Ribosomal protein L29 (L29p)	0	DIRECT
Lipocalins	0	DIRECT
XPC-binding domain	0	DIRECT
Phosphoglucomutase, first 3 domains	0	DIRECT
RraA-like	0	DIRECT
FAH	0	DIRECT
Ligand-binding domain in the NO signalling and Golgi transport	0	DIRECT
GroEL-intermediate domain like	0	DIRECT
MurD-like peptide ligases, peptide-binding domain	0	DIRECT
S13-like H2TH domain	0	DIRECT
Ribosomal protein L30p/L7e	0	DIRECT
tRNA-binding arm	0	DIRECT
Aconitase iron-sulfur domain	0	DIRECT
Serine metabolism enzymes domain	0	DIRECT
Alpha subunit of glutamate synthase, C-terminal domain	0	DIRECT
Diaminopimelate epimerase-like	0	DIRECT
Phosphoglycerate kinase	0	DIRECT
AMPKBI-like	0	DIRECT
Expressed protein At2g23090/F21P24.15	0	DIRECT
Zn-finger domain of Sec23/24	0	DIRECT
Tautomerase/MIF	0	DIRECT
Ribosomal protein L10-like	0	DIRECT
Ribosomal protein S6	0	DIRECT
LuxS/MPP-like metallohydrolase	0	DIRECT
Tim10-like	0	DIRECT
E2F-DP heterodimerization region	0	DIRECT
Ribosomal L11/L12e N-terminal domain	0	DIRECT
NHL repeat	0	DIRECT
Sigma3 and sigma4 domains of RNA polymerase sigma factors	0	DIRECT
Cryptochrome/photolyase FAD-binding domain	0	DIRECT
Ribosomal proteins S24e, L23 and L15e	0	DIRECT
Head domain of nucleotide exchange factor GrpE	0	DIRECT
DNA repair protein MutS, domain II	0	DIRECT
TATA-box binding protein-like	0	DIRECT
eIF1-like	0	DIRECT
Tetrahydrobiopterin biosynthesis enzymes-like	0	DIRECT
BolA-like	0	DIRECT
Ribosomal protein L14	0	DIRECT
MurD-like peptide ligases, catalytic domain	0	DIRECT
RibA-like	0	DIRECT
Chorismate mutase II	0	DIRECT
YrdC/RibB	0	DIRECT
Seven-hairpin glycosidases	0	DIRECT
Mitochondrial glycoprotein MAM33-like	0	DIRECT
Composite domain of metallo-dependent hydrolases	0	DIRECT
Preprotein translocase SecE subunit	0	DIRECT
Heme-dependent catalase-like	0	DIRECT
P-domain of calnexin/calreticulin	0	DIRECT
ssDNA-binding transcriptional regulator domain	0	DIRECT
Phosphoglucomutase, C-terminal domain	0	DIRECT
Metallo-dependent hydrolases	0	DIRECT
RNA-binding domain, RBD	0.00000007993	DIRECT
FtsH protease domain-like	0.00005865	DIRECT
beta-sandwich domain of Sec23/24	0.0008553	DIRECT

Supra-domain (Duplex) in N- to C-terminal order

Highlighted in gray are those with FDR>0.001

Supra-domain (Duplex) in N- to C-terminal order	FDR (all)	Annotation (direct or inherited)
48179,52413 48179 - 6-phosphogluconate dehydrogenase C-terminal domain-like 52413 - UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	0	DIRECT
109604,81301 109604 - HD-domain/PDEase-like 81301 - Nucleotidyltransferase	0	DIRECT
63411,63411 63411 - LuxS/MPP-like metallohydrolase 63411 - LuxS/MPP-like metallohydrolase	0	DIRECT
81995,82919 81995 - beta-sandwich domain of Sec23/24 82919 - Zn-finger domain of Sec23/24	0	DIRECT
47473,103506 47473 - EF-hand 103506 - Mitochondrial carrier	0	DIRECT
54160,52540 54160 - Chromo domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
63737,55486 63737 - Leukotriene A4 hydrolase N-terminal domain 55486 - Metalloproteases ("zincins"), catalytic domain	0	DIRECT
51338,51556 51338 - Composite domain of metallo-dependent hydrolases 51556 - Metallo-dependent hydrolases	0	DIRECT
56524,81296 56524 - Oxidoreductase molybdopterin-binding domain 81296 - E set domains	0	DIRECT
54909,54909 54909 - Dimeric alpha+beta barrel 54909 - Dimeric alpha+beta barrel	0	DIRECT
54534,48452 54534 - FKBP-like 48452 - TPR-like	0	DIRECT
54849,52029 54849 - GroEL-intermediate domain like 52029 - GroEL apical domain-like	0	DIRECT
48403,57850 48403 - Ankyrin repeat 57850 - RING/U-box	0	DIRECT
117916,117916 117916 - Fe-S cluster assembly (FSCA) domain-like 117916 - Fe-S cluster assembly (FSCA) domain-like	0	DIRECT
47661,58038 47661 - t-snare proteins 58038 - SNARE fusion complex	0	DIRECT
55785,55785 55785 - PYP-like sensor domain (PAS domain) 55785 - PYP-like sensor domain (PAS domain)	0	DIRECT
158702,52540 158702 - Sec63 N-terminal domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
88946,88659 88946 - Sigma2 domain of RNA polymerase sigma factors 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors	0	DIRECT
158702,81296 158702 - Sec63 N-terminal domain-like 81296 - E set domains	0	DIRECT
53738,53738 53738 - Phosphoglucomutase, first 3 domains 53738 - Phosphoglucomutase, first 3 domains	0	DIRECT
55920,46785 55920 - Creatinase/aminopeptidase 46785 - "Winged helix" DNA-binding domain	0	DIRECT
46785,54928 46785 - "Winged helix" DNA-binding domain 54928 - RNA-binding domain, RBD	0	DIRECT
81296,51445 81296 - E set domains 51445 - (Trans)glycosidases	0	DIRECT
52540,90002 52540 - P-loop containing nucleoside triphosphate hydrolases 90002 - Hypothetical protein YjiA, C-terminal domain	0	DIRECT
53738,55957 53738 - Phosphoglucomutase, first 3 domains 55957 - Phosphoglucomutase, C-terminal domain	0	DIRECT
50249,55681 50249 - Nucleic acid-binding proteins 55681 - Class II aaRS and biotin synthetases	0	DIRECT
54585,52540 54585 - Cdc48 domain 2-like 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
55781,47384 55781 - GAF domain-like 47384 - Homodimeric domain of signal transducing histidine kinase	0	DIRECT
48592,54849 48592 - GroEL equatorial domain-like 54849 - GroEL-intermediate domain like	0	DIRECT
46785,144074 46785 - "Winged helix" DNA-binding domain 144074 - E2F-DP heterodimerization region	0	DIRECT
49899,63887 49899 - Concanavalin A-like lectins/glucanases 63887 - P-domain of calnexin/calreticulin	0	DIRECT
55781,55781 55781 - GAF domain-like 55781 - GAF domain-like	0	DIRECT
55973,55973 55973 - S-adenosylmethionine synthetase 55973 - S-adenosylmethionine synthetase	0	DIRECT
54980,54980 54980 - EF-G C-terminal domain-like 54980 - EF-G C-terminal domain-like	0	DIRECT
50022,55961 50022 - ISP domain 55961 - Bet v1-like	0	DIRECT
55874,52172 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 52172 - CheY-like	0	DIRECT
56059,52210 56059 - Glutathione synthetase ATP-binding domain-like 52210 - Succinyl-CoA synthetase domains	0	DIRECT
46785,158702 46785 - "Winged helix" DNA-binding domain 158702 - Sec63 N-terminal domain-like	0	DIRECT
55781,55785 55781 - GAF domain-like 55785 - PYP-like sensor domain (PAS domain)	0	DIRECT
47895,52540 47895 - Transducin (alpha subunit), insertion domain 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
47005,52777 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 52777 - CoA-dependent acyltransferases	0	DIRECT
53383,53383 53383 - PLP-dependent transferases 53383 - PLP-dependent transferases	0	DIRECT
52540,52058 52540 - P-loop containing nucleoside triphosphate hydrolases 52058 - L domain-like	0	DIRECT
51230,47005 51230 - Single hybrid motif 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	0	DIRECT
55821,142695 55821 - YrdC/RibB 142695 - RibA-like	0	DIRECT
54747,46906 54747 - Ribosomal L11/L12e N-terminal domain 46906 - Ribosomal protein L11, C-terminal domain	0	DIRECT
53850,55021 53850 - Periplasmic binding protein-like II 55021 - ACT-like	0	DIRECT
54160,54160 54160 - Chromo domain-like 54160 - Chromo domain-like	0	DIRECT
55021,56112 55021 - ACT-like 56112 - Protein kinase-like (PK-like)	0	DIRECT
57850,54928 57850 - RING/U-box 54928 - RNA-binding domain, RBD	0	DIRECT
101238,46934 101238 - XPC-binding domain 46934 - UBA-like	0	DIRECT
82919,53300 82919 - Zn-finger domain of Sec23/24 53300 - vWA-like	0	DIRECT
55785,55781 55785 - PYP-like sensor domain (PAS domain) 55781 - GAF domain-like	0	DIRECT
53732,52016 53732 - Aconitase iron-sulfur domain 52016 - LeuD/IlvD-like	0	DIRECT
46689,51905 46689 - Homeodomain-like 51905 - FAD/NAD(P)-binding domain	0	DIRECT
52540,48403 52540 - P-loop containing nucleoside triphosphate hydrolases 48403 - Ankyrin repeat	0	DIRECT
81383,54518 81383 - F-box domain 54518 - Tubby C-terminal domain-like	0	DIRECT
88697,52374 88697 - PUA domain-like 52374 - Nucleotidylyl transferase	0	DIRECT
81811,82754 81811 - Helical domain of Sec23/24 82754 - C-terminal, gelsolin-like domain of Sec23/24	0	DIRECT
82199,81822 82199 - SET domain 81822 - RuBisCo LSMT C-terminal, substrate-binding domain	0	DIRECT
51735,143548 51735 - NAD(P)-binding Rossmann-fold domains 143548 - Serine metabolism enzymes domain	0	DIRECT
143548,55021 143548 - Serine metabolism enzymes domain 55021 - ACT-like	0	DIRECT
82171,53474 82171 - DPP6 N-terminal domain-like 53474 - alpha/beta-Hydrolases	0	DIRECT
48403,52540 48403 - Ankyrin repeat 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
102848,54236 102848 - NSFL1 (p97 ATPase) cofactor p47, SEP domain 54236 - Ubiquitin-like	0	DIRECT
52425,48173 52425 - Cryptochrome/photolyase, N-terminal domain 48173 - Cryptochrome/photolyase FAD-binding domain	0	DIRECT
158639,63748 158639 - ENT-like 63748 - Tudor/PWWP/MBT	0	DIRECT
49723,48484 49723 - Lipase/lipooxygenase domain (PLAT/LH2 domain) 48484 - Lipoxigenase	0	DIRECT
88659,88659 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors	0	DIRECT
56112,48371 56112 - Protein kinase-like (PK-like) 48371 - ARM repeat	0	DIRECT
52402,52833 52402 - Adenine nucleotide alpha hydrolases-like 52833 - Thioredoxin-like	0	DIRECT
53300,81995 53300 - vWA-like 81995 - beta-sandwich domain of Sec23/24	0	DIRECT
88798,50249 88798 - N-terminal, heterodimerisation domain of RBP7 (RpoE) 50249 - Nucleic acid-binding proteins	0	DIRECT
50156,52096 50156 - PDZ domain-like 52096 - ClpP/crotonase	0	DIRECT
81296,52540 81296 - E set domains 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
52172,52172 52172 - CheY-like 52172 - CheY-like	0	DIRECT
101908,56219 101908 - Putative isomerase YbhE 56219 - DNase I-like	0	DIRECT
81995,81811 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24	0	DIRECT
54534,54534 54534 - FKBP-like 54534 - FKBP-like	0	DIRECT
58014,51064 58014 - Coiled-coil domain of nucleotide exchange factor GrpE 51064 - Head domain of nucleotide exchange factor GrpE	0	DIRECT
52540,140990 52540 - P-loop containing nucleoside triphosphate hydrolases 140990 - FtsH protease domain-like	0.0005008	DIRECT

Supra-domain (Triple) in N- to C-terminal order

Highlighted in gray are those with FDR>0.001

Supra-domain (Triple) in N- to C-terminal order	FDR (all)	Annotation (direct or inherited)
46785,158702,81296 46785 - "Winged helix" DNA-binding domain 158702 - Sec63 N-terminal domain-like 81296 - E set domains	0	DIRECT
81995,81811,82754 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24 82754 - C-terminal, gelsolin-like domain of Sec23/24	0	DIRECT
54534,54534,54534 54534 - FKBP-like 54534 - FKBP-like 54534 - FKBP-like	0	DIRECT
52540,52540,46785 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases 46785 - "Winged helix" DNA-binding domain	0	DIRECT
81296,52540,48403 81296 - E set domains 52540 - P-loop containing nucleoside triphosphate hydrolases 48403 - Ankyrin repeat	0	DIRECT
54160,54160,52540 54160 - Chromo domain-like 54160 - Chromo domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
50692,54585,52540 50692 - ADC-like 54585 - Cdc48 domain 2-like 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
63411,63411,63411 63411 - LuxS/MPP-like metallohydrolase 63411 - LuxS/MPP-like metallohydrolase 63411 - LuxS/MPP-like metallohydrolase	0	DIRECT
46785,158702,52540 46785 - "Winged helix" DNA-binding domain 158702 - Sec63 N-terminal domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
52540,46785,158702 52540 - P-loop containing nucleoside triphosphate hydrolases 46785 - "Winged helix" DNA-binding domain 158702 - Sec63 N-terminal domain-like	0	DIRECT
53738,53738,53738 53738 - Phosphoglucomutase, first 3 domains 53738 - Phosphoglucomutase, first 3 domains 53738 - Phosphoglucomutase, first 3 domains	0	DIRECT
55781,55785,55785 55781 - GAF domain-like 55785 - PYP-like sensor domain (PAS domain) 55785 - PYP-like sensor domain (PAS domain)	0	DIRECT
51230,47005,52777 51230 - Single hybrid motif 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 52777 - CoA-dependent acyltransferases	0	DIRECT
53300,81995,81811 53300 - vWA-like 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24	0	DIRECT
53738,53738,55957 53738 - Phosphoglucomutase, first 3 domains 53738 - Phosphoglucomutase, first 3 domains 55957 - Phosphoglucomutase, C-terminal domain	0	DIRECT
82919,53300,81995 82919 - Zn-finger domain of Sec23/24 53300 - vWA-like 81995 - beta-sandwich domain of Sec23/24	0	DIRECT
55973,55973,55973 55973 - S-adenosylmethionine synthetase 55973 - S-adenosylmethionine synthetase 55973 - S-adenosylmethionine synthetase	0	DIRECT
46689,51905,54373 46689 - Homeodomain-like 51905 - FAD/NAD(P)-binding domain 54373 - FAD-linked reductases, C-terminal domain	0	DIRECT
88946,88659,88659 88946 - Sigma2 domain of RNA polymerase sigma factors 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors	0	DIRECT
51735,48179,52413 51735 - NAD(P)-binding Rossmann-fold domains 48179 - 6-phosphogluconate dehydrogenase C-terminal domain-like 52413 - UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	0	DIRECT
52283,51735,143548 52283 - Formate/glycerate dehydrogenase catalytic domain-like 51735 - NAD(P)-binding Rossmann-fold domains 143548 - Serine metabolism enzymes domain	0	DIRECT
47384,55874,52172 47384 - Homodimeric domain of signal transducing histidine kinase 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 52172 - CheY-like	0	DIRECT
54585,52540,52540 54585 - Cdc48 domain 2-like 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
81995,82919,53300 81995 - beta-sandwich domain of Sec23/24 82919 - Zn-finger domain of Sec23/24 53300 - vWA-like	0	DIRECT
50447,54980,54980 50447 - Translation proteins 54980 - EF-G C-terminal domain-like 54980 - EF-G C-terminal domain-like	0	DIRECT
55785,55781,55781 55785 - PYP-like sensor domain (PAS domain) 55781 - GAF domain-like 55781 - GAF domain-like	0	DIRECT
55781,47384,55874 55781 - GAF domain-like 47384 - Homodimeric domain of signal transducing histidine kinase 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	0	DIRECT
48592,54849,52029 48592 - GroEL equatorial domain-like 54849 - GroEL-intermediate domain like 52029 - GroEL apical domain-like	0	DIRECT
81296,51445,51011 81296 - E set domains 51445 - (Trans)glycosidases 51011 - Glycosyl hydrolase domain	0	DIRECT
51735,143548,55021 51735 - NAD(P)-binding Rossmann-fold domains 143548 - Serine metabolism enzymes domain 55021 - ACT-like	0	DIRECT
55781,55781,55785 55781 - GAF domain-like 55781 - GAF domain-like 55785 - PYP-like sensor domain (PAS domain)	0	DIRECT
158702,52540,52540 158702 - Sec63 N-terminal domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
54534,54534,48452 54534 - FKBP-like 54534 - FKBP-like 48452 - TPR-like	0	DIRECT
54160,52540,52540 54160 - Chromo domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT