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CTD Diseases (CD): Neoplasms  
(show info)
Biomedical Ontology
Like Gene Ontology (GO), biomedical ontology such as phenotype ontology classifies and organizes gene-mutant/null phenotypic information from the very general at the top to more specific terms in the directed acyclic graph (DAG) by viewing an individual term as a node and its relations to parental terms (allowing for multiple parents) as directed edges. To navigate this hierarchy, we display all parental phenotypic terms to the current phenotypic term of interest ordered by their shortest distances to the current term. Also, only direct children phenotypic terms of the current phenotypic term are listed. Biomedical ontologies we have incorporated are as follows:
- Disease Ontology (DO) Ontology DO semantically integrates disease and medical vocabularies through extensive cross mapping of DO terms to MeSH, ICD, NCI’s thesaurus, SNOMED and OMIM.
- Human Phenotype (HP) Ontology HP captures phenotypic abnormalities that are described in OMIM, along with the corresponding disease-causing genes. It includes three complementary biological concepts: Mode_of_Inheritance (MI), ONset_and_clinical_course (ON), and Phenotypic_Abnormality (PA).
- Mouse Phenotype (MP) Ontology MP describes phenotypes of the mouse after a specific gene is genetically disrupted. Using it, Mouse Genome Informatics (MGI) provides high-coverate gene-level phenotypes for the mouse.
- Worm Phenotype (WP) Ontology WP classifies and organizes phenotype descriptions for C. elegans and other nematodes. Using it, WormBase provides primary resource for phenotype annotations for C. elegans.
- Yeast Phenotype (YP) Ontology Based on YP which is the major contributor to the ‘Ascomycete phenotype ontology’, Saccharomyces Genome Database (SGD) provides single mutant phenotypes for every gene in the yeast genome.
- Fly Phenotype (FP) Ontology FP refers to FlyBase controlled vocabulary. Specifically, a structured controlled vocabulary is used for the annotation of alleles (for their mutagen etc) in FlyBase.
- Fly Anatomy (FA) Ontology FA is a structured controlled vocabulary of the anatomy of Drosophila melanogaster, used for the description of phenotypes and where a gene is expressed.
- Zebrafish Anatomy (ZA) Ontology ZA displays anatomical terms of the zebrafish using standard anatomical nomenclature, together with affected genes.
- Xenopus Anatomy (XA) Ontology XA represents the lineage of tissues and the timing of development for frogs (Xenopus laevis and Xenopus tropicalis). It is used to annotate Xenopus gene expression patterns and mutant and morphant phenotypes.
- Arabidopsis Plant Ontology (AP) Ontology As a major contributor to Plant Ontology which describes plant anatomical and morphological structures (AN) and growth and developmental stages (DE), the Arabidopsis Information Resource (TAIR) provides arabidopsis plant ontology annotations for the model higher plant Arabidopsis thaliana.
- Enzyme Commission (EC) Ontology Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed.
- UniProtKB KeyWords (KW) Ontology Keywords in UniProtKB are controlled vocabulary, providing a summary of the entry content and are used to index UniProtKB/Swiss-Prot entries based on 10 categories (the category "Technical term" being excluded here). Each keyword is attributed manually to UniProtKB/Swiss-Prot entries and automatically to UniProtKB/TrEMBL entries (according to specific annotation rules).
- CTD Diseases (CD) Ontology CD is MEDIC disease vocabulary that is modified by CTD from the "Diseases" [C] branch of Medical Subject Headings (MeSH), combined with genetic disorders from the Online Mendelian Inheritance in OMIM database.
- CTD Chemicals (CC) Ontology CC is chemical vocabulary that is adapted by CTD from the "Chemicals and Drugs" category and Supplementary Concept Records of Medical Subject Headings (MeSH, a hierarchical vocabulary used to index articles for MEDLINE/PubMed).
Jump to [ Top · Hierarchy · Annotations ]
Root: CD Hierarchy (CTD diseases from Comparative Toxicogenomics Database)
Jump to [ Top · Hierarchy ]
Superfamily( show details)
Highlighted in gray are those with FDR_all>0.001
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| p53 tetramerization domain | 0 | DIRECT |
| Inhibitor of apoptosis (IAP) repeat | 0 | DIRECT |
| SPOC domain-like | 0 | DIRECT |
| SWIB/MDM2 domain | 0 | DIRECT |
| HSP90 C-terminal domain | 0 | DIRECT |
| Translational machinery components | 0 | DIRECT |
| Aconitase iron-sulfur domain | 0 | DIRECT |
| Bcl-2 inhibitors of programmed cell death | 0 | DIRECT |
| Glutamine synthetase/guanido kinase | 0 | DIRECT |
| Orange domain-like | 0 | DIRECT |
| DNA repair protein MutS, domain III | 0 | DIRECT |
| Nuclear receptor coactivator interlocking domain | 0 | DIRECT |
| LeuD/IlvD-like | 0 | DIRECT |
| RGC domain-like | 0 | DIRECT |
| Protein kinase-like (PK-like) | 0.0003906 | DIRECT |
| HLH, helix-loop-helix DNA-binding domain | 0.00171 | INHERITED FROM: Burkitt Lymphoma || Neoplasms, Neuroepithelial || Neuroectodermal Tumors |
| ABC transporter transmembrane region | 0.002302 | INHERITED FROM: Gastrointestinal Neoplasms || Digestive System Neoplasms || Neoplasms by Site || Intestinal Neoplasms || Colorectal Neoplasms || Squamous Cell Carcinoma of Head and Neck |
| HMG-box | 0.003777 | INHERITED FROM: Lymphoma, T-Cell, Cutaneous |
| Growth factor receptor domain | 0.005306 | INHERITED FROM: Skin Neoplasms || Glioma || Biliary Tract Neoplasms || Carcinoma, Ductal || Gallbladder Neoplasms |
| Annexin | 0.007467 | INHERITED FROM: Leukemia, Myeloid || Mouth Neoplasms || Leukemia, Myeloid, Acute |
| Cyclin-like | 0.00884 | INHERITED FROM: Carcinoma, Squamous Cell || Head and Neck Neoplasms || Neoplasms, Squamous Cell || Squamous Cell Carcinoma of Head and Neck |
| Prefoldin | 0.01052 | INHERITED FROM: Carcinoma |
| PGBD-like | 0.01052 | INHERITED FROM: Astrocytoma || Neoplastic Processes |
| SET domain | 0.01775 | INHERITED FROM: Cell Transformation, Neoplastic || Leukemia |
| PYP-like sensor domain (PAS domain) | 0.02061 | INHERITED FROM: Leukemia, Myelogenous, Chronic, BCR-ABL Positive || Breast Neoplasms |
| Cytochrome P450 | 0.02135 | INHERITED FROM: Prostatic Neoplasms || Neoplasms by Site |
| STAT | 0.02357 | INHERITED FROM: Leukemia, Lymphoid || Precursor Cell Lymphoblastic Leukemia-Lymphoma |
| Metallothionein | 0.02357 | INHERITED FROM: Urinary Bladder Neoplasms || Carcinoma, Hepatocellular |
| Transcription factor STAT-4 N-domain | 0.02357 | INHERITED FROM: Leukemia, Lymphoid || Precursor Cell Lymphoblastic Leukemia-Lymphoma |
| Multidrug efflux transporter AcrB transmembrane domain | 0.02357 | INHERITED FROM: Neoplasms, Connective and Soft Tissue || Digestive System Neoplasms || Gastrointestinal Stromal Tumors || Neoplasms, Connective Tissue |
| Nuclear receptor ligand-binding domain | 0.03031 | INHERITED FROM: Prostatic Intraepithelial Neoplasia |
| Bromodomain | 0.04001 | INHERITED FROM: Medulloblastoma || Lymphoma, T-Cell || Small Cell Lung Carcinoma || Carcinoma, Transitional Cell || Urogenital Neoplasms |
| Ribosomal protein S5 domain 2-like | 0.04329 | INHERITED FROM: Colorectal Neoplasms, Hereditary Nonpolyposis || Neoplastic Syndromes, Hereditary |
| 4-helical cytokines | 0.04578 | INHERITED FROM: Endocrine Gland Neoplasms || Sarcoma || Leukemia-Lymphoma, Adult T-Cell || Neoplasms, Experimental || Neoplasms, Plasma Cell || Carcinoma, Transitional Cell || Nevi and Melanomas |
| Tudor/PWWP/MBT | 0.04874 | INHERITED FROM: Glioma |
| p53-like transcription factors | 0.05681 | INHERITED FROM: Cell Transformation, Neoplastic || Lymphoma, T-Cell |
| Kringle-like | 0.06143 | INHERITED FROM: Astrocytoma || Neoplasms, Experimental || Bone Neoplasms || Neoplastic Processes |
| Glucocorticoid receptor-like (DNA-binding domain) | 0.06394 | INHERITED FROM: Prostatic Intraepithelial Neoplasia |
| ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.06542 | INHERITED FROM: Colorectal Neoplasms, Hereditary Nonpolyposis || Neoplastic Syndromes, Hereditary |
| Notch domain | 0.07075 | INHERITED FROM: Carcinoma, Squamous Cell || Skin Neoplasms || Endocrine Gland Neoplasms || Glioma || Astrocytoma || Glioblastoma || Neoplasms, Squamous Cell || Carcinoma, Ductal || Breast Neoplasms || Neoplasms, Ductal, Lobular, and Medullary || Esophageal Neoplasms || Pancreatic Neoplasms |
| Serum albumin-like | 0.07075 | INHERITED FROM: Stomach Neoplasms |
| E2F-DP heterodimerization region | 0.07151 | INHERITED FROM: Thoracic Neoplasms || Respiratory Tract Neoplasms || Lung Neoplasms || Carcinoma, Non-Small-Cell Lung |
| Hemopexin-like domain | 0.0757 | INHERITED FROM: Neoplastic Processes |
| vWA-like | 0.09872 | INHERITED FROM: Leukemia, Promyelocytic, Acute |
| DEATH domain | 0.1029 | INHERITED FROM: Lymphoma, Non-Hodgkin || Carcinoma, Renal Cell |
| Lamin A/C globular tail domain | 0.1227 | INHERITED FROM: Thoracic Neoplasms || Respiratory Tract Neoplasms || Lung Neoplasms |
| Cytokine | 0.1399 | INHERITED FROM: Mesothelioma |
| dsRNA-binding domain-like | 0.1454 | INHERITED FROM: Neoplasms, Complex and Mixed || Neoplastic Syndromes, Hereditary || Wilms Tumor |
| Interleukin 8-like chemokines | 0.2026 | INHERITED FROM: Thoracic Neoplasms || Adenoma || Mesothelioma, Malignant || Neoplasms, Mesothelial || Mesothelioma |
| beta-beta-alpha zinc fingers | 0.2044 | INHERITED FROM: Adenocarcinoma, Papillary |
| Integrin domains | 0.2166 | INHERITED FROM: Leukemia, Promyelocytic, Acute || Leukemia, Myeloid, Acute |
| Ran binding protein zinc finger-like | 0.2507 | INHERITED FROM: Sarcoma |
| SH2 domain | 0.2519 | INHERITED FROM: Leukemia |
| C2 domain (Calcium/lipid-binding domain, CaLB) | 0.329 | INHERITED FROM: Lymphoma, Non-Hodgkin || Lymphoma, Large B-Cell, Diffuse || Lymphoma |
| Frizzled cysteine-rich domain | 0.3433 | INHERITED FROM: Colorectal Neoplasms |
| WW domain | 0.4246 | INHERITED FROM: Neoplasms, Muscle Tissue || Sarcoma || Myosarcoma |
| SMAD MH1 domain | 0.4315 | INHERITED FROM: Intestinal Neoplasms || Colorectal Neoplasms |
| Integrin alpha N-terminal domain | 0.4364 | INHERITED FROM: Leukemia, Promyelocytic, Acute |
| L domain-like | 0.4943 | INHERITED FROM: Biliary Tract Neoplasms || Gallbladder Neoplasms |
| MHC antigen-recognition domain | 0.5006 | INHERITED FROM: Pharyngeal Neoplasms || Oropharyngeal Neoplasms || Otorhinolaryngologic Neoplasms |
| Plexin repeat | 0.5006 | INHERITED FROM: Endometrial Neoplasms |
| Immunoglobulin | 0.5368 | INHERITED FROM: Oropharyngeal Neoplasms |
| NAD(P)-linked oxidoreductase | 0.5423 | INHERITED FROM: Cell Transformation, Neoplastic || Neoplasms, Hormone-Dependent || Genital Neoplasms, Female || Endometrial Neoplasms || Polycystic Ovary Syndrome || Uterine Neoplasms |
| Ankyrin repeat | 0.562 | INHERITED FROM: Neoplasms, Ductal, Lobular, and Medullary |
| Clc chloride channel | 0.6826 | INHERITED FROM: Glioma |
| ARM repeat | 0.6954 | INHERITED FROM: Adenocarcinoma Of Esophagus |
| Sema domain | 0.7798 | INHERITED FROM: Endometrial Neoplasms |
| FAD/NAD(P)-binding domain | 0.9908 | INHERITED FROM: Paraganglioma |
LINKTO: Domain2BO Download and Domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Family( show details)
Highlighted in gray are those with FDR_all>0.001
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| DNA gyrase/MutL, second domain | 0 | DIRECT |
| PDI-like | 0 | DIRECT |
| Phoshoinositide 3-kinase (PI3K) helical domain | 0 | DIRECT |
| DNA repair protein MutS, domain III | 0 | DIRECT |
| Bcl-2 inhibitors of programmed cell death | 0 | DIRECT |
| HSP90 C-terminal domain | 0 | DIRECT |
| Ubiquitin carboxyl-terminal hydrolase UCH-L | 0 | DIRECT |
| Kinase associated domain 1, KA1 | 0 | DIRECT |
| Ribosomal protein L18 and S11 | 0 | DIRECT |
| C5 cytosine-specific DNA methylase, DCM | 0 | DIRECT |
| Inhibitor of apoptosis (IAP) repeat | 0 | DIRECT |
| Multidrug efflux transporter AcrB transmembrane domain | 0 | DIRECT |
| DNA gyrase/MutL, N-terminal domain | 0 | DIRECT |
| CUT domain | 0 | DIRECT |
| Linker histone H1/H5 | 0 | DIRECT |
| Phoshoinositide 3-kinase (PI3K), catalytic domain | 0 | DIRECT |
| Tissue inhibitor of metalloproteinases, TIMP | 0 | DIRECT |
| Formate/glycerate dehydrogenases, substrate-binding domain | 0 | DIRECT |
| Transferrin | 0 | DIRECT |
| Aconitase iron-sulfur domain | 0 | DIRECT |
| Nuclear receptor coactivator interlocking domain | 0 | DIRECT |
| p53 tetramerization domain | 0 | DIRECT |
| Hairy Orange domain | 0 | DIRECT |
| Histone lysine methyltransferases | 0 | DIRECT |
| 2Fe-2S ferredoxin domains from multidomain proteins | 0 | DIRECT |
| SWIB/MDM2 domain | 0 | DIRECT |
| Heat shock protein 90, HSP90, N-terminal domain | 0 | DIRECT |
| PAS domain of steroid receptor coactivator 1A, NCo-A1 | 0 | DIRECT |
| LeuD-like | 0 | DIRECT |
| RGC domain | 0 | DIRECT |
| DEATH effector domain, DED | 0 | DIRECT |
| Hsp90 middle domain | 0 | DIRECT |
| p53 DNA-binding domain-like | 0 | DIRECT |
| ABC transporter ATPase domain-like | 0.000009372 | DIRECT |
| Growth factor receptor domain | 0.0006281 | DIRECT |
| Protein kinases, catalytic subunit | 0.001002 | INHERITED FROM: Biliary Tract Neoplasms |
| HLH, helix-loop-helix DNA-binding domain | 0.002336 | INHERITED FROM: Burkitt Lymphoma || Neoplasms, Neuroepithelial || Neuroectodermal Tumors |
| PHD domain | 0.003631 | INHERITED FROM: Lymphoma, T-Cell, Cutaneous |
| ABC transporter transmembrane region | 0.003986 | INHERITED FROM: Gastrointestinal Neoplasms || Digestive System Neoplasms || Neoplasms by Site || Intestinal Neoplasms || Colorectal Neoplasms || Squamous Cell Carcinoma of Head and Neck |
| HMG-box | 0.004215 | INHERITED FROM: Lymphoma, T-Cell, Cutaneous |
| Cyclin | 0.006315 | INHERITED FROM: Head and Neck Neoplasms || Neoplasms, Squamous Cell || Genital Neoplasms, Female || Squamous Cell Carcinoma of Head and Neck || Carcinoma |
| Annexin | 0.006866 | INHERITED FROM: Leukemia, Myeloid || Mouth Neoplasms || Leukemia, Myeloid, Acute |
| ets domain | 0.009987 | INHERITED FROM: Prostatic Neoplasms || Precursor Cell Lymphoblastic Leukemia-Lymphoma |
| MMP N-terminal domain | 0.01028 | INHERITED FROM: Astrocytoma || Neoplastic Processes |
| Fibronectin type II module | 0.01222 | INHERITED FROM: Liver Neoplasms || Glioma || Astrocytoma || Glioblastoma || Neoplasms, Experimental || Neoplasm Invasiveness || Mammary Neoplasms, Animal || Carcinoma |
| Cystatins | 0.01222 | INHERITED FROM: Neoplasms, Nerve Tissue |
| Platelet-derived growth factor-like | 0.01222 | INHERITED FROM: Neoplasms, Connective and Soft Tissue || Neoplasms, Vascular Tissue |
| Matrix metalloproteases, catalytic domain | 0.0154 | INHERITED FROM: Astrocytoma || Neoplastic Processes |
| STAT | 0.02161 | INHERITED FROM: Leukemia, Lymphoid || Precursor Cell Lymphoblastic Leukemia-Lymphoma |
| Metallothionein | 0.02161 | INHERITED FROM: Urinary Bladder Neoplasms || Carcinoma, Hepatocellular |
| L domain | 0.02161 | INHERITED FROM: Nasopharyngeal Neoplasms || Pharyngeal Neoplasms || Biliary Tract Neoplasms || Gallbladder Neoplasms || Otorhinolaryngologic Neoplasms |
| STAT DNA-binding domain | 0.02161 | INHERITED FROM: Leukemia, Lymphoid || Precursor Cell Lymphoblastic Leukemia-Lymphoma |
| Transcription factor STAT-4 N-domain | 0.02161 | INHERITED FROM: Leukemia, Lymphoid || Precursor Cell Lymphoblastic Leukemia-Lymphoma |
| Cell cycle transcription factor e2f-dp | 0.02604 | INHERITED FROM: Thoracic Neoplasms || Respiratory Tract Neoplasms || Carcinoma, Bronchogenic || Lung Neoplasms || Carcinoma, Non-Small-Cell Lung || Bronchial Neoplasms |
| Nuclear receptor | 0.03202 | INHERITED FROM: Prostatic Intraepithelial Neoplasia || Carcinoma in Situ |
| Cytochrome P450 | 0.03202 | INHERITED FROM: Prostatic Neoplasms |
| Nuclear receptor ligand-binding domain | 0.0344 | INHERITED FROM: Prostatic Intraepithelial Neoplasia || Carcinoma in Situ |
| Prefoldin | 0.03694 | INHERITED FROM: Esophageal Squamous Cell Carcinoma || Esophageal Neoplasms |
| E2F dimerization segment | 0.03694 | INHERITED FROM: Thoracic Neoplasms || Respiratory Tract Neoplasms || Carcinoma, Bronchogenic || Lung Neoplasms || Carcinoma, Non-Small-Cell Lung || Bronchial Neoplasms |
| S100 proteins | 0.03939 | INHERITED FROM: Medulloblastoma || Neuroectodermal Tumors, Primitive |
| p120GAP domain-like | 0.04153 | INHERITED FROM: Nervous System Neoplasms |
| Bromodomain | 0.04211 | INHERITED FROM: Medulloblastoma || Lymphoma, T-Cell || Small Cell Lung Carcinoma || Carcinoma, Transitional Cell || Urogenital Neoplasms |
| Interferons/interleukin-10 (IL-10) | 0.06086 | INHERITED FROM: Neuroendocrine Tumors || Leukemia, Lymphoid || Endocrine Gland Neoplasms || Leukemia-Lymphoma, Adult T-Cell || Neuroectodermal Tumors || Neoplasms, Germ Cell and Embryonal || Neoplasms, Nerve Tissue || Intestinal Neoplasms || Nevi and Melanomas || Pancreatic Neoplasms |
| DEATH domain, DD | 0.06247 | INHERITED FROM: Lymphoma, Non-Hodgkin || Carcinoma, Renal Cell || Lymphoma, Large B-Cell, Diffuse |
| EGF-type module | 0.06321 | INHERITED FROM: Glioma || Carcinoma, Pancreatic Ductal || Carcinoma, Ductal || Neoplasms, Ductal, Lobular, and Medullary |
| Serum albumin-like | 0.06464 | INHERITED FROM: Stomach Neoplasms |
| Notch domain | 0.06464 | INHERITED FROM: Carcinoma, Squamous Cell || Skin Neoplasms || Endocrine Gland Neoplasms || Glioma || Astrocytoma || Glioblastoma || Neoplasms, Squamous Cell || Carcinoma, Ductal || Breast Neoplasms || Neoplasms, Ductal, Lobular, and Medullary || Esophageal Neoplasms || Pancreatic Neoplasms |
| Hemopexin-like domain | 0.07598 | INHERITED FROM: Astrocytoma || Neoplastic Processes |
| PWWP domain | 0.09252 | INHERITED FROM: Leukemia, Myeloid, Acute |
| Lamin A/C globular tail domain | 0.1124 | INHERITED FROM: Thoracic Neoplasms || Respiratory Tract Neoplasms || Lung Neoplasms |
| MBT repeat | 0.1124 | INHERITED FROM: Medulloblastoma || Glioma || Neoplasms, Neuroepithelial || Neuroectodermal Tumors || Neoplasms, Germ Cell and Embryonal || Neoplasms, Nerve Tissue || Neuroectodermal Tumors, Primitive |
| PLC-like (P variant) | 0.1124 | INHERITED FROM: Lymphoma, T-Cell, Cutaneous || Lymphoma, Non-Hodgkin || Lymphoma, Large B-Cell, Diffuse || Lymphoma |
| Short-chain cytokines | 0.1132 | INHERITED FROM: Mesothelioma |
| RecA protein-like (ATPase-domain) | 0.1132 | INHERITED FROM: Breast Neoplasms |
| Integrin A (or I) domain | 0.1255 | INHERITED FROM: Leukemia, Promyelocytic, Acute |
| Ras-binding domain, RBD | 0.1458 | INHERITED FROM: Lymphoma, Non-Hodgkin || Lymphoma, Large B-Cell, Diffuse || Lymphoma |
| Kringle modules | 0.197 | INHERITED FROM: Neoplasm Metastasis |
| Interleukin 8-like chemokines | 0.217 | INHERITED FROM: Thoracic Neoplasms || Adenoma || Mesothelioma, Malignant || Neoplasms, Mesothelial || Mesothelioma |
| Integrin domains | 0.2215 | INHERITED FROM: Leukemia, Promyelocytic, Acute || Leukemia, Myeloid, Acute |
| Classic zinc finger, C2H2 | 0.2293 | INHERITED FROM: Adenocarcinoma, Papillary || Thyroid Cancer, Papillary |
| Ran binding protein zinc finger-like | 0.2491 | INHERITED FROM: Sarcoma |
| SH2 domain | 0.289 | INHERITED FROM: Leukemia |
| Integrin alpha N-terminal domain | 0.3447 | INHERITED FROM: Leukemia, Promyelocytic, Acute |
| Frizzled cysteine-rich domain | 0.3447 | INHERITED FROM: Colorectal Neoplasms |
| Fibroblast growth factors (FGF) | 0.3635 | INHERITED FROM: Mesothelioma |
| SMAD MH1 domain | 0.4282 | INHERITED FROM: Intestinal Neoplasms || Colorectal Neoplasms |
| SMAD domain | 0.4282 | INHERITED FROM: Intestinal Neoplasms || Colorectal Neoplasms |
| WW domain | 0.4408 | INHERITED FROM: Neoplasms, Muscle Tissue || Sarcoma || Myosarcoma |
| C1 set domains (antibody constant domain-like) | 0.4422 | INHERITED FROM: Pharyngeal Neoplasms || Oropharyngeal Neoplasms || Otorhinolaryngologic Neoplasms |
| Plexin repeat | 0.518 | INHERITED FROM: Endometrial Neoplasms |
| MHC antigen-recognition domain | 0.518 | INHERITED FROM: Pharyngeal Neoplasms || Oropharyngeal Neoplasms || Otorhinolaryngologic Neoplasms |
| Aldo-keto reductases (NADP) | 0.5462 | INHERITED FROM: Cell Transformation, Neoplastic || Neoplasms, Hormone-Dependent || Cysts || Genital Neoplasms, Female || Endometrial Neoplasms || Polycystic Ovary Syndrome || Uterine Neoplasms || Ovarian Cysts |
| Ankyrin repeat | 0.5932 | INHERITED FROM: Neoplasms, Ductal, Lobular, and Medullary |
| Clc chloride channel | 0.6803 | INHERITED FROM: Glioma || Neoplasms, Neuroepithelial |
| Sema domain | 0.7878 | INHERITED FROM: Genital Neoplasms, Female || Endometrial Neoplasms |
| G proteins | 0.8839 | INHERITED FROM: Nevus, Sebaceous of Jadassohn || Adenocarcinoma, Follicular || Leukemia, Myelomonocytic, Juvenile |
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| DNA gyrase/MutL, second domain | 0 | Direct |
| PDI-like | 0 | Direct |
| Phoshoinositide 3-kinase (PI3K) helical domain | 0 | Direct |
| DNA repair protein MutS, domain III | 0 | Direct |
| Bcl-2 inhibitors of programmed cell death | 0 | Direct |
| HSP90 C-terminal domain | 0 | Direct |
| Ubiquitin carboxyl-terminal hydrolase UCH-L | 0 | Direct |
| Kinase associated domain 1, KA1 | 0 | Direct |
| Ribosomal protein L18 and S11 | 0 | Direct |
| C5 cytosine-specific DNA methylase, DCM | 0 | Direct |
| Inhibitor of apoptosis (IAP) repeat | 0 | Direct |
| Multidrug efflux transporter AcrB transmembrane domain | 0 | Direct |
| DNA gyrase/MutL, N-terminal domain | 0 | Direct |
| CUT domain | 0 | Direct |
| Linker histone H1/H5 | 0 | Direct |
| Phoshoinositide 3-kinase (PI3K), catalytic domain | 0 | Direct |
| Tissue inhibitor of metalloproteinases, TIMP | 0 | Direct |
| Formate/glycerate dehydrogenases, substrate-binding domain | 0 | Direct |
| Transferrin | 0 | Direct |
| Aconitase iron-sulfur domain | 0 | Direct |
| Nuclear receptor coactivator interlocking domain | 0 | Direct |
| p53 tetramerization domain | 0 | Direct |
| Hairy Orange domain | 0 | Direct |
| Histone lysine methyltransferases | 0 | Direct |
| 2Fe-2S ferredoxin domains from multidomain proteins | 0 | Direct |
| SWIB/MDM2 domain | 0 | Direct |
| Heat shock protein 90, HSP90, N-terminal domain | 0 | Direct |
| PAS domain of steroid receptor coactivator 1A, NCo-A1 | 0 | Direct |
| LeuD-like | 0 | Direct |
| RGC domain | 0 | Direct |
| DEATH effector domain, DED | 0 | Direct |
| Hsp90 middle domain | 0 | Direct |
| p53 DNA-binding domain-like | 0 | Direct |
| ABC transporter ATPase domain-like | 0.000009372 | Direct |
| Growth factor receptor domain | 0.0006281 | Direct |
| Protein kinases, catalytic subunit | 0.001002 | Inherited |
| HLH, helix-loop-helix DNA-binding domain | 0.002336 | Inherited |
| PHD domain | 0.003631 | Inherited |
| ABC transporter transmembrane region | 0.003986 | Inherited |
| HMG-box | 0.004215 | Inherited |
| Cyclin | 0.006315 | Inherited |
| Annexin | 0.006866 | Inherited |
| ets domain | 0.009987 | Inherited |
| MMP N-terminal domain | 0.01028 | Inherited |
| Fibronectin type II module | 0.01222 | Inherited |
| Cystatins | 0.01222 | Inherited |
| Platelet-derived growth factor-like | 0.01222 | Inherited |
| Matrix metalloproteases, catalytic domain | 0.0154 | Inherited |
| STAT | 0.02161 | Inherited |
| Metallothionein | 0.02161 | Inherited |
| L domain | 0.02161 | Inherited |
| STAT DNA-binding domain | 0.02161 | Inherited |
| Transcription factor STAT-4 N-domain | 0.02161 | Inherited |
| Cell cycle transcription factor e2f-dp | 0.02604 | Inherited |
| Nuclear receptor | 0.03202 | Inherited |
| Cytochrome P450 | 0.03202 | Inherited |
| Nuclear receptor ligand-binding domain | 0.0344 | Inherited |
| Prefoldin | 0.03694 | Inherited |
| E2F dimerization segment | 0.03694 | Inherited |
| S100 proteins | 0.03939 | Inherited |
| p120GAP domain-like | 0.04153 | Inherited |
| Bromodomain | 0.04211 | Inherited |
| Interferons/interleukin-10 (IL-10) | 0.06086 | Inherited |
| DEATH domain, DD | 0.06247 | Inherited |
| EGF-type module | 0.06321 | Inherited |
| Serum albumin-like | 0.06464 | Inherited |
| Notch domain | 0.06464 | Inherited |
| Hemopexin-like domain | 0.07598 | Inherited |
| PWWP domain | 0.09252 | Inherited |
| Lamin A/C globular tail domain | 0.1124 | Inherited |
| MBT repeat | 0.1124 | Inherited |
| PLC-like (P variant) | 0.1124 | Inherited |
| Short-chain cytokines | 0.1132 | Inherited |
| RecA protein-like (ATPase-domain) | 0.1132 | Inherited |
| Integrin A (or I) domain | 0.1255 | Inherited |
| Ras-binding domain, RBD | 0.1458 | Inherited |
| Kringle modules | 0.197 | Inherited |
| Interleukin 8-like chemokines | 0.217 | Inherited |
| Integrin domains | 0.2215 | Inherited |
| Classic zinc finger, C2H2 | 0.2293 | Inherited |
| Ran binding protein zinc finger-like | 0.2491 | Inherited |
| SH2 domain | 0.289 | Inherited |
| Integrin alpha N-terminal domain | 0.3447 | Inherited |
| Frizzled cysteine-rich domain | 0.3447 | Inherited |
| Fibroblast growth factors (FGF) | 0.3635 | Inherited |
| SMAD MH1 domain | 0.4282 | Inherited |
| SMAD domain | 0.4282 | Inherited |
| WW domain | 0.4408 | Inherited |
| C1 set domains (antibody constant domain-like) | 0.4422 | Inherited |
| Plexin repeat | 0.518 | Inherited |
| MHC antigen-recognition domain | 0.518 | Inherited |
| Aldo-keto reductases (NADP) | 0.5462 | Inherited |
| Ankyrin repeat | 0.5932 | Inherited |
| Clc chloride channel | 0.6803 | Inherited |
| Sema domain | 0.7878 | Inherited |
| G proteins | 0.8839 | Inherited |
LINKTO: Domain2BO Download and Domain2BO Algorithm
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Supra-domain (Single)( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Single) |
FDR (all) |
Annotation (direct or inherited) |
| p53 tetramerization domain | 0 | DIRECT |
| Aconitase iron-sulfur domain | 0 | DIRECT |
| LeuD/IlvD-like | 0 | DIRECT |
| SPOC domain-like | 0 | DIRECT |
| Bcl-2 inhibitors of programmed cell death | 0 | DIRECT |
| Inhibitor of apoptosis (IAP) repeat | 0 | DIRECT |
| Translational machinery components | 0 | DIRECT |
| SWIB/MDM2 domain | 0 | DIRECT |
| Nuclear receptor coactivator interlocking domain | 0 | DIRECT |
| Glutamine synthetase/guanido kinase | 0 | DIRECT |
| Orange domain-like | 0 | DIRECT |
| HSP90 C-terminal domain | 0 | DIRECT |
| RGC domain-like | 0 | DIRECT |
| DNA repair protein MutS, domain III | 0 | DIRECT |
| Protein kinase-like (PK-like) | 0.0002374 | DIRECT |
| HLH, helix-loop-helix DNA-binding domain | 0.001142 | INHERITED FROM: Neoplasms, Ductal, Lobular, and Medullary || Neoplasms, Neuroepithelial || Carcinoma, Ductal || Burkitt Lymphoma || Neuroectodermal Tumors |
| ABC transporter transmembrane region | 0.001562 | INHERITED FROM: Digestive System Neoplasms || Colorectal Neoplasms || Neoplasms by Site || Gastrointestinal Neoplasms || Squamous Cell Carcinoma of Head and Neck || Intestinal Neoplasms |
| HMG-box | 0.002634 | INHERITED FROM: Lymphoma, T-Cell, Cutaneous |
| Growth factor receptor domain | 0.003774 | INHERITED FROM: Neoplasms, Ductal, Lobular, and Medullary || Carcinoma, Ductal || Neuroectodermal Tumors || Skin Neoplasms || Biliary Tract Neoplasms || Glioma || Gallbladder Neoplasms |
| Annexin | 0.005441 | INHERITED FROM: Leukemia, Myeloid, Acute || Mouth Neoplasms || Leukemia, Myeloid |
| Cyclin-like | 0.006437 | INHERITED FROM: Head and Neck Neoplasms || Neoplasms, Squamous Cell || Squamous Cell Carcinoma of Head and Neck || Carcinoma, Squamous Cell |
| PGBD-like | 0.007624 | INHERITED FROM: Colorectal Neoplasms || Astrocytoma || Neoplastic Processes |
| Prefoldin | 0.007624 | INHERITED FROM: Neoplasms by Site || Carcinoma || Cell Transformation, Neoplastic || Neoplasms, Glandular and Epithelial |
| SET domain | 0.01333 | INHERITED FROM: Carcinogenesis || Leukemia || Cell Transformation, Neoplastic |
| FYVE/PHD zinc finger | 0.01355 | INHERITED FROM: Carcinoma, Adenoid Cystic |
| PYP-like sensor domain (PAS domain) | 0.01561 | INHERITED FROM: Leukemia, Myelogenous, Chronic, BCR-ABL Positive || Breast Neoplasms |
| Cytochrome P450 | 0.01619 | INHERITED FROM: Neoplasms by Site || Prostatic Neoplasms |
| Multidrug efflux transporter AcrB transmembrane domain | 0.01801 | INHERITED FROM: Digestive System Neoplasms || Neoplasms, Connective and Soft Tissue || Gastrointestinal Stromal Tumors || Neoplasms, Connective Tissue |
| Transcription factor STAT-4 N-domain | 0.01801 | INHERITED FROM: Precursor Cell Lymphoblastic Leukemia-Lymphoma || Leukemia, Lymphoid |
| STAT | 0.01801 | INHERITED FROM: Precursor Cell Lymphoblastic Leukemia-Lymphoma || Leukemia, Lymphoid |
| Metallothionein | 0.01801 | INHERITED FROM: Carcinoma, Hepatocellular || Urologic Neoplasms || Urinary Bladder Neoplasms |
| Nuclear receptor ligand-binding domain | 0.02361 | INHERITED FROM: Prostatic Intraepithelial Neoplasia || Carcinoma in Situ |
| Bromodomain | 0.03152 | INHERITED FROM: Medulloblastoma || Urogenital Neoplasms || Lymphoma, T-Cell || Carcinoma, Transitional Cell || Small Cell Lung Carcinoma |
| Ribosomal protein S5 domain 2-like | 0.03434 | INHERITED FROM: Colorectal Neoplasms, Hereditary Nonpolyposis || Neoplastic Syndromes, Hereditary |
| 4-helical cytokines | 0.03632 | INHERITED FROM: Neoplasms, Plasma Cell || Sarcoma || Carcinoma, Transitional Cell || Endocrine Gland Neoplasms || Neoplasms, Experimental || Nevi and Melanomas || Leukemia-Lymphoma, Adult T-Cell |
| Tudor/PWWP/MBT | 0.03883 | INHERITED FROM: Medulloblastoma || Glioma |
| p53-like transcription factors | 0.04558 | INHERITED FROM: Lymphoma, T-Cell || Pancreatic Neoplasms || Cell Transformation, Neoplastic |
| Kringle-like | 0.04974 | INHERITED FROM: Astrocytoma || Neoplastic Processes || Neoplasms, Experimental || Bone Neoplasms |
| ARID-like | 0.05148 | INHERITED FROM: Adenocarcinoma |
| Glucocorticoid receptor-like (DNA-binding domain) | 0.05194 | INHERITED FROM: Prostatic Intraepithelial Neoplasia |
| ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.05298 | INHERITED FROM: Colorectal Neoplasms, Hereditary Nonpolyposis || Neoplastic Syndromes, Hereditary |
| "Winged helix" DNA-binding domain | 0.05605 | INHERITED FROM: Carcinoma, Non-Small-Cell Lung |
| Serum albumin-like | 0.05757 | INHERITED FROM: Stomach Neoplasms |
| Notch domain | 0.05757 | INHERITED FROM: Neoplasms, Ductal, Lobular, and Medullary || Astrocytoma || Carcinoma, Ductal || Pancreatic Neoplasms || Breast Neoplasms || Esophageal Neoplasms || Neoplasms, Squamous Cell || Endocrine Gland Neoplasms || Carcinoma, Squamous Cell || Glioblastoma || Neuroectodermal Tumors || Skin Neoplasms || Glioma |
| E2F-DP heterodimerization region | 0.05816 | INHERITED FROM: Carcinoma, Non-Small-Cell Lung || Lung Neoplasms || Respiratory Tract Neoplasms || Thoracic Neoplasms |
| Hemopexin-like domain | 0.06187 | INHERITED FROM: Astrocytoma || Neoplastic Processes |
| vWA-like | 0.08215 | INHERITED FROM: Leukemia, Promyelocytic, Acute |
| DEATH domain | 0.08605 | INHERITED FROM: Lymphoma, Non-Hodgkin || Carcinoma, Renal Cell |
| Lamin A/C globular tail domain | 0.1036 | INHERITED FROM: Lung Neoplasms || Respiratory Tract Neoplasms || Thoracic Neoplasms |
| Cytokine | 0.1188 | INHERITED FROM: Mesothelioma |
| dsRNA-binding domain-like | 0.124 | INHERITED FROM: Wilms Tumor || Neoplasms, Complex and Mixed || Neoplastic Syndromes, Hereditary |
| Interleukin 8-like chemokines | 0.1768 | INHERITED FROM: Mesothelioma || Mesothelioma, Malignant || Adenoma || Thoracic Neoplasms || Neoplasms, Mesothelial |
| beta-beta-alpha zinc fingers | 0.1786 | INHERITED FROM: Adenocarcinoma, Papillary |
| Integrin domains | 0.1902 | INHERITED FROM: Leukemia, Promyelocytic, Acute || Leukemia, Myeloid, Acute |
| Ran binding protein zinc finger-like | 0.2225 | INHERITED FROM: Sarcoma |
| Caspase-like | 0.2225 | INHERITED FROM: Lymphoma, Non-Hodgkin |
| SH2 domain | 0.2235 | INHERITED FROM: Leukemia || Leukemia, Myelomonocytic, Juvenile |
| C2 domain (Calcium/lipid-binding domain, CaLB) | 0.2965 | INHERITED FROM: Lymphoma, Non-Hodgkin || Lymphoma || Lymphoma, Large B-Cell, Diffuse |
| Frizzled cysteine-rich domain | 0.3105 | INHERITED FROM: Colorectal Neoplasms |
| WW domain | 0.3899 | INHERITED FROM: Neoplasms, Muscle Tissue || Myosarcoma || Sarcoma |
| SMAD MH1 domain | 0.3971 | INHERITED FROM: Colorectal Neoplasms || Intestinal Neoplasms |
| Lipase/lipooxygenase domain (PLAT/LH2 domain) | 0.4019 | INHERITED FROM: Colonic Neoplasms |
| Integrin alpha N-terminal domain | 0.4019 | INHERITED FROM: Leukemia, Promyelocytic, Acute |
| Intermediate filament protein, coiled coil region | 0.413 | INHERITED FROM: Cell Transformation, Neoplastic |
| L domain-like | 0.46 | INHERITED FROM: Biliary Tract Neoplasms || Gallbladder Neoplasms |
| MHC antigen-recognition domain | 0.4665 | INHERITED FROM: Pharyngeal Neoplasms || Oropharyngeal Neoplasms || Otorhinolaryngologic Neoplasms |
| Plexin repeat | 0.4665 | INHERITED FROM: Endometrial Neoplasms |
| Immunoglobulin | 0.5031 | INHERITED FROM: Oropharyngeal Neoplasms |
| NAD(P)-linked oxidoreductase | 0.5088 | INHERITED FROM: Uterine Neoplasms || Neoplasms, Hormone-Dependent || Endometrial Neoplasms || Cell Transformation, Neoplastic || Ovarian Cysts || Polycystic Ovary Syndrome || Cysts || Genital Neoplasms, Female |
| Ankyrin repeat | 0.5284 | INHERITED FROM: Neoplasms, Ductal, Lobular, and Medullary |
| Clc chloride channel | 0.65 | INHERITED FROM: Neoplasms, Neuroepithelial || Glioma |
| ARM repeat | 0.6635 | INHERITED FROM: Adenocarcinoma Of Esophagus |
| Sema domain | 0.7508 | INHERITED FROM: Endometrial Neoplasms || Genital Neoplasms, Female |
| FAD/NAD(P)-binding domain | 0.9792 | INHERITED FROM: Paraganglioma |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Duplex) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
57903,57903 57903 - FYVE/PHD zinc finger 57903 - FYVE/PHD zinc finger | 0 | DIRECT |
48371,-7 48371 - ARM repeat -7 - CATH | 0 | DIRECT |
54236,57889 54236 - Ubiquitin-like 57889 - Cysteine-rich domain | 0 | DIRECT |
90193,90193 90193 - Notch domain 90193 - Notch domain | 0 | DIRECT |
49417,47719 49417 - p53-like transcription factors 47719 - p53 tetramerization domain | 0 | DIRECT |
50729,55550 50729 - PH domain-like 55550 - SH2 domain | 0 | DIRECT |
117839,117839 117839 - WWE domain 117839 - WWE domain | 0 | DIRECT |
49562,48371 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) 48371 - ARM repeat | 0 | DIRECT |
100895,100895 100895 - Kazal-type serine protease inhibitors 100895 - Kazal-type serine protease inhibitors | 0 | DIRECT |
53850,53850 53850 - Periplasmic binding protein-like II 53850 - Periplasmic binding protein-like II | 0 | DIRECT |
48371,56112 48371 - ARM repeat 56112 - Protein kinase-like (PK-like) | 0 | DIRECT |
-7,56112 -7 - CATH 56112 - Protein kinase-like (PK-like) | 0 | DIRECT |
53732,52016 53732 - Aconitase iron-sulfur domain 52016 - LeuD/IlvD-like | 0 | DIRECT |
103473,100895 103473 - MFS general substrate transporter 100895 - Kazal-type serine protease inhibitors | 0 | DIRECT |
49562,48350 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) 48350 - GTPase activation domain, GAP | 0 | DIRECT |
47459,158457 47459 - HLH, helix-loop-helix DNA-binding domain 158457 - Orange domain-like | 0 | DIRECT |
57924,57924 57924 - Inhibitor of apoptosis (IAP) repeat 57924 - Inhibitor of apoptosis (IAP) repeat | 0 | DIRECT |
52058,52047 52058 - L domain-like 52047 - RNI-like | 0 | DIRECT |
48334,52540 48334 - DNA repair protein MutS, domain III 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
57196,90193 57196 - EGF/Laminin 90193 - Notch domain | 0 | DIRECT |
46579,64593 46579 - Prefoldin 64593 - Intermediate filament protein, coiled coil region | 0 | DIRECT |
55550,158235 55550 - SH2 domain 158235 - SOCS box-like | 0 | DIRECT |
55874,54211 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 54211 - Ribosomal protein S5 domain 2-like | 0 | DIRECT |
57184,49265 57184 - Growth factor receptor domain 49265 - Fibronectin type III | 0 | DIRECT |
47095,47095 47095 - HMG-box 47095 - HMG-box | 0 | DIRECT |
90123,52540 90123 - ABC transporter transmembrane region 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.001562 | INHERITED FROM: Digestive System Neoplasms || Colorectal Neoplasms || Neoplasms by Site || Gastrointestinal Neoplasms || Squamous Cell Carcinoma of Head and Neck || Intestinal Neoplasms |
57196,57184 57196 - EGF/Laminin 57184 - Growth factor receptor domain | 0.002712 | INHERITED FROM: Neoplasms, Ductal, Lobular, and Medullary || Astrocytoma || Carcinoma, Ductal || Pancreatic Neoplasms || Endocrine Gland Neoplasms || Carcinoma, Pancreatic Ductal || Neuroectodermal Tumors || Skin Neoplasms || Glioma |
47954,47954 47954 - Cyclin-like 47954 - Cyclin-like | 0.004647 | INHERITED FROM: Head and Neck Neoplasms || Neoplasms by Histologic Type || Carcinoma || Neoplasms, Squamous Cell || Squamous Cell Carcinoma of Head and Neck || Genital Neoplasms, Female |
52540,90123 52540 - P-loop containing nucleoside triphosphate hydrolases 90123 - ABC transporter transmembrane region | 0.005441 | INHERITED FROM: Colorectal Neoplasms || Gastrointestinal Neoplasms || Intestinal Neoplasms |
47090,55486 47090 - PGBD-like 55486 - Metalloproteases ("zincins"), catalytic domain | 0.007624 | INHERITED FROM: Colorectal Neoplasms || Astrocytoma || Neoplastic Processes |
63748,63748 63748 - Tudor/PWWP/MBT 63748 - Tudor/PWWP/MBT | 0.009938 | INHERITED FROM: Medulloblastoma || Neoplasms, Nerve Tissue || Neoplasms, Germ Cell and Embryonal || Neoplasms by Histologic Type || Neoplasms, Neuroepithelial || Neuroectodermal Tumors || Glioma || Melanoma |
52283,51735 52283 - Formate/glycerate dehydrogenase catalytic domain-like 51735 - NAD(P)-binding Rossmann-fold domains | 0.01801 | INHERITED FROM: Prostatic Neoplasms || Genital Neoplasms, Male |
48092,47655 48092 - Transcription factor STAT-4 N-domain 47655 - STAT | 0.01801 | INHERITED FROM: Precursor Cell Lymphoblastic Leukemia-Lymphoma || Leukemia, Lymphoid |
47655,49417 47655 - STAT 49417 - p53-like transcription factors | 0.01801 | INHERITED FROM: Precursor Cell Lymphoblastic Leukemia-Lymphoma || Leukemia, Lymphoid |
49417,55550 49417 - p53-like transcription factors 55550 - SH2 domain | 0.01801 | INHERITED FROM: Precursor Cell Lymphoblastic Leukemia-Lymphoma || Leukemia, Lymphoid |
55785,55785 55785 - PYP-like sensor domain (PAS domain) 55785 - PYP-like sensor domain (PAS domain) | 0.01801 | INHERITED FROM: Prostatic Neoplasms || Breast Neoplasms |
57184,52058 57184 - Growth factor receptor domain 52058 - L domain-like | 0.01801 | INHERITED FROM: Pharyngeal Neoplasms || Nasopharyngeal Neoplasms || Otorhinolaryngologic Neoplasms || Biliary Tract Neoplasms || Gallbladder Neoplasms |
52058,57184 52058 - L domain-like 57184 - Growth factor receptor domain | 0.01801 | INHERITED FROM: Pharyngeal Neoplasms || Nasopharyngeal Neoplasms || Otorhinolaryngologic Neoplasms || Biliary Tract Neoplasms || Gallbladder Neoplasms |
54160,54160 54160 - Chromo domain-like 54160 - Chromo domain-like | 0.02123 | INHERITED FROM: Prostatic Neoplasms |
47459,55785 47459 - HLH, helix-loop-helix DNA-binding domain 55785 - PYP-like sensor domain (PAS domain) | 0.03224 | INHERITED FROM: Breast Neoplasms |
57440,50494 57440 - Kringle-like 50494 - Trypsin-like serine proteases | 0.03513 | INHERITED FROM: Neoplasm Metastasis |
57440,57440 57440 - Kringle-like 57440 - Kringle-like | 0.03513 | INHERITED FROM: Carcinoma, Hepatocellular || Astrocytoma || Carcinoma || Neoplastic Processes || Neoplasms, Experimental || Glioma |
52058,48726 52058 - L domain-like 48726 - Immunoglobulin | 0.05757 | INHERITED FROM: Neoplasms, Neuroepithelial || Neuroectodermal Tumors || Glioma |
55550,50044 55550 - SH2 domain 50044 - SH3-domain | 0.05757 | INHERITED FROM: Leukemia, Lymphoid |
51735,50129 51735 - NAD(P)-binding Rossmann-fold domains 50129 - GroES-like | 0.05757 | INHERITED FROM: Mouth Neoplasms |
63501,50242 63501 - Frizzled cysteine-rich domain 50242 - TIMP-like | 0.05757 | INHERITED FROM: Colorectal Neoplasms || Gastrointestinal Neoplasms || Intestinal Neoplasms |
48552,48552 48552 - Serum albumin-like 48552 - Serum albumin-like | 0.05757 | INHERITED FROM: Stomach Neoplasms |
46785,144074 46785 - "Winged helix" DNA-binding domain 144074 - E2F-DP heterodimerization region | 0.05816 | INHERITED FROM: Carcinoma, Non-Small-Cell Lung || Lung Neoplasms || Respiratory Tract Neoplasms || Thoracic Neoplasms |
50729,56112 50729 - PH domain-like 56112 - Protein kinase-like (PK-like) | 0.05816 | INHERITED FROM: Head and Neck Neoplasms |
57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.06058 | INHERITED FROM: Neoplasms, Ductal, Lobular, and Medullary || Astrocytoma || Carcinoma, Ductal || Carcinoma, Pancreatic Ductal || Glioma |
52833,52833 52833 - Thioredoxin-like 52833 - Thioredoxin-like | 0.07986 | INHERITED FROM: Prostatic Neoplasms || Genital Neoplasms, Male |
47986,47986 47986 - DEATH domain 47986 - DEATH domain | 0.09588 | INHERITED FROM: Stomach Neoplasms |
50729,49562 50729 - PH domain-like 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) | 0.1036 | INHERITED FROM: Prostatic Neoplasms || Genital Neoplasms, Male |
49899,57196 49899 - Concanavalin A-like lectins/glucanases 57196 - EGF/Laminin | 0.1121 | INHERITED FROM: Esophageal Neoplasms || Esophageal Squamous Cell Carcinoma |
81296,81296 81296 - E set domains 81296 - E set domains | 0.1427 | INHERITED FROM: Sarcoma |
57184,57184 57184 - Growth factor receptor domain 57184 - Growth factor receptor domain | 0.1718 | INHERITED FROM: Neoplasms, Neuroepithelial || Astrocytoma || Glioblastoma || Glioma |
53300,69318 53300 - vWA-like 69318 - Integrin alpha N-terminal domain | 0.2418 | INHERITED FROM: Leukemia, Promyelocytic, Acute || Leukemia, Myeloid, Acute || Leukemia || Leukemia, Myeloid |
69179,69179 69179 - Integrin domains 69179 - Integrin domains | 0.3105 | INHERITED FROM: Leukemia, Promyelocytic, Acute |
69318,69179 69318 - Integrin alpha N-terminal domain 69179 - Integrin domains | 0.3105 | INHERITED FROM: Leukemia, Promyelocytic, Acute |
54452,48726 54452 - MHC antigen-recognition domain 48726 - Immunoglobulin | 0.3222 | INHERITED FROM: Pharyngeal Neoplasms || Oropharyngeal Neoplasms || Otorhinolaryngologic Neoplasms |
57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 0.3289 | INHERITED FROM: Adenocarcinoma, Papillary || Thyroid Cancer, Papillary |
57716,57716 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) | 0.373 | INHERITED FROM: Leukemia, T-Cell |
55550,56112 55550 - SH2 domain 56112 - Protein kinase-like (PK-like) | 0.399 | INHERITED FROM: Leukemia |
57184,57196 57184 - Growth factor receptor domain 57196 - EGF/Laminin | 0.4799 | INHERITED FROM: Neoplasms, Ductal, Lobular, and Medullary || Carcinoma, Ductal || Carcinoma, Pancreatic Ductal |
101912,103575 101912 - Sema domain 103575 - Plexin repeat | 0.7508 | INHERITED FROM: Endometrial Neoplasms || Genital Neoplasms, Female |
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
57903,57903 57903 - FYVE/PHD zinc finger 57903 - FYVE/PHD zinc finger | 0 | Direct |
48371,-7 48371 - ARM repeat -7 - CATH | 0 | Direct |
54236,57889 54236 - Ubiquitin-like 57889 - Cysteine-rich domain | 0 | Direct |
90193,90193 90193 - Notch domain 90193 - Notch domain | 0 | Direct |
49417,47719 49417 - p53-like transcription factors 47719 - p53 tetramerization domain | 0 | Direct |
50729,55550 50729 - PH domain-like 55550 - SH2 domain | 0 | Direct |
117839,117839 117839 - WWE domain 117839 - WWE domain | 0 | Direct |
49562,48371 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) 48371 - ARM repeat | 0 | Direct |
100895,100895 100895 - Kazal-type serine protease inhibitors 100895 - Kazal-type serine protease inhibitors | 0 | Direct |
53850,53850 53850 - Periplasmic binding protein-like II 53850 - Periplasmic binding protein-like II | 0 | Direct |
48371,56112 48371 - ARM repeat 56112 - Protein kinase-like (PK-like) | 0 | Direct |
-7,56112 -7 - CATH 56112 - Protein kinase-like (PK-like) | 0 | Direct |
53732,52016 53732 - Aconitase iron-sulfur domain 52016 - LeuD/IlvD-like | 0 | Direct |
103473,100895 103473 - MFS general substrate transporter 100895 - Kazal-type serine protease inhibitors | 0 | Direct |
49562,48350 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) 48350 - GTPase activation domain, GAP | 0 | Direct |
47459,158457 47459 - HLH, helix-loop-helix DNA-binding domain 158457 - Orange domain-like | 0 | Direct |
57924,57924 57924 - Inhibitor of apoptosis (IAP) repeat 57924 - Inhibitor of apoptosis (IAP) repeat | 0 | Direct |
52058,52047 52058 - L domain-like 52047 - RNI-like | 0 | Direct |
48334,52540 48334 - DNA repair protein MutS, domain III 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
57196,90193 57196 - EGF/Laminin 90193 - Notch domain | 0 | Direct |
46579,64593 46579 - Prefoldin 64593 - Intermediate filament protein, coiled coil region | 0 | Direct |
55550,158235 55550 - SH2 domain 158235 - SOCS box-like | 0 | Direct |
55874,54211 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 54211 - Ribosomal protein S5 domain 2-like | 0 | Direct |
57184,49265 57184 - Growth factor receptor domain 49265 - Fibronectin type III | 0 | Direct |
47095,47095 47095 - HMG-box 47095 - HMG-box | 0 | Direct |
90123,52540 90123 - ABC transporter transmembrane region 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.001562 | Inherited |
57196,57184 57196 - EGF/Laminin 57184 - Growth factor receptor domain | 0.002712 | Inherited |
47954,47954 47954 - Cyclin-like 47954 - Cyclin-like | 0.004647 | Inherited |
52540,90123 52540 - P-loop containing nucleoside triphosphate hydrolases 90123 - ABC transporter transmembrane region | 0.005441 | Inherited |
47090,55486 47090 - PGBD-like 55486 - Metalloproteases ("zincins"), catalytic domain | 0.007624 | Inherited |
63748,63748 63748 - Tudor/PWWP/MBT 63748 - Tudor/PWWP/MBT | 0.009938 | Inherited |
52283,51735 52283 - Formate/glycerate dehydrogenase catalytic domain-like 51735 - NAD(P)-binding Rossmann-fold domains | 0.01801 | Inherited |
48092,47655 48092 - Transcription factor STAT-4 N-domain 47655 - STAT | 0.01801 | Inherited |
47655,49417 47655 - STAT 49417 - p53-like transcription factors | 0.01801 | Inherited |
49417,55550 49417 - p53-like transcription factors 55550 - SH2 domain | 0.01801 | Inherited |
55785,55785 55785 - PYP-like sensor domain (PAS domain) 55785 - PYP-like sensor domain (PAS domain) | 0.01801 | Inherited |
57184,52058 57184 - Growth factor receptor domain 52058 - L domain-like | 0.01801 | Inherited |
52058,57184 52058 - L domain-like 57184 - Growth factor receptor domain | 0.01801 | Inherited |
54160,54160 54160 - Chromo domain-like 54160 - Chromo domain-like | 0.02123 | Inherited |
47459,55785 47459 - HLH, helix-loop-helix DNA-binding domain 55785 - PYP-like sensor domain (PAS domain) | 0.03224 | Inherited |
57440,50494 57440 - Kringle-like 50494 - Trypsin-like serine proteases | 0.03513 | Inherited |
57440,57440 57440 - Kringle-like 57440 - Kringle-like | 0.03513 | Inherited |
52058,48726 52058 - L domain-like 48726 - Immunoglobulin | 0.05757 | Inherited |
55550,50044 55550 - SH2 domain 50044 - SH3-domain | 0.05757 | Inherited |
51735,50129 51735 - NAD(P)-binding Rossmann-fold domains 50129 - GroES-like | 0.05757 | Inherited |
63501,50242 63501 - Frizzled cysteine-rich domain 50242 - TIMP-like | 0.05757 | Inherited |
48552,48552 48552 - Serum albumin-like 48552 - Serum albumin-like | 0.05757 | Inherited |
46785,144074 46785 - "Winged helix" DNA-binding domain 144074 - E2F-DP heterodimerization region | 0.05816 | Inherited |
50729,56112 50729 - PH domain-like 56112 - Protein kinase-like (PK-like) | 0.05816 | Inherited |
57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.06058 | Inherited |
52833,52833 52833 - Thioredoxin-like 52833 - Thioredoxin-like | 0.07986 | Inherited |
47986,47986 47986 - DEATH domain 47986 - DEATH domain | 0.09588 | Inherited |
50729,49562 50729 - PH domain-like 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) | 0.1036 | Inherited |
49899,57196 49899 - Concanavalin A-like lectins/glucanases 57196 - EGF/Laminin | 0.1121 | Inherited |
81296,81296 81296 - E set domains 81296 - E set domains | 0.1427 | Inherited |
57184,57184 57184 - Growth factor receptor domain 57184 - Growth factor receptor domain | 0.1718 | Inherited |
53300,69318 53300 - vWA-like 69318 - Integrin alpha N-terminal domain | 0.2418 | Inherited |
69179,69179 69179 - Integrin domains 69179 - Integrin domains | 0.3105 | Inherited |
69318,69179 69318 - Integrin alpha N-terminal domain 69179 - Integrin domains | 0.3105 | Inherited |
54452,48726 54452 - MHC antigen-recognition domain 48726 - Immunoglobulin | 0.3222 | Inherited |
57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 0.3289 | Inherited |
57716,57716 57716 - Glucocorticoid receptor-like (DNA-binding domain) 57716 - Glucocorticoid receptor-like (DNA-binding domain) | 0.373 | Inherited |
55550,56112 55550 - SH2 domain 56112 - Protein kinase-like (PK-like) | 0.399 | Inherited |
57184,57196 57184 - Growth factor receptor domain 57196 - EGF/Laminin | 0.4799 | Inherited |
101912,103575 101912 - Sema domain 103575 - Plexin repeat | 0.7508 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Triple) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
47986,47986,52129 47986 - DEATH domain 47986 - DEATH domain 52129 - Caspase-like | 0 | DIRECT |
57196,57196,90193 57196 - EGF/Laminin 57196 - EGF/Laminin 90193 - Notch domain | 0 | DIRECT |
100895,100895,100895 100895 - Kazal-type serine protease inhibitors 100895 - Kazal-type serine protease inhibitors 100895 - Kazal-type serine protease inhibitors | 0 | DIRECT |
49785,57184,49265 49785 - Galactose-binding domain-like 57184 - Growth factor receptor domain 49265 - Fibronectin type III | 0 | DIRECT |
49562,48371,56112 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) 48371 - ARM repeat 56112 - Protein kinase-like (PK-like) | 0 | DIRECT |
55550,56112,56112 55550 - SH2 domain 56112 - Protein kinase-like (PK-like) 56112 - Protein kinase-like (PK-like) | 0 | DIRECT |
52058,48726,48726 52058 - L domain-like 48726 - Immunoglobulin 48726 - Immunoglobulin | 0 | DIRECT |
50729,55550,56112 50729 - PH domain-like 55550 - SH2 domain 56112 - Protein kinase-like (PK-like) | 0 | DIRECT |
54791,54791,54791 54791 - Eukaryotic type KH-domain (KH-domain type I) 54791 - Eukaryotic type KH-domain (KH-domain type I) 54791 - Eukaryotic type KH-domain (KH-domain type I) | 0 | DIRECT |
49503,49503,49503 49503 - Cupredoxins 49503 - Cupredoxins 49503 - Cupredoxins | 0 | DIRECT |
57924,57924,57924 57924 - Inhibitor of apoptosis (IAP) repeat 57924 - Inhibitor of apoptosis (IAP) repeat 57924 - Inhibitor of apoptosis (IAP) repeat | 0 | DIRECT |
57184,52058,57184 57184 - Growth factor receptor domain 52058 - L domain-like 57184 - Growth factor receptor domain | 0 | DIRECT |
90123,52540,90123 90123 - ABC transporter transmembrane region 52540 - P-loop containing nucleoside triphosphate hydrolases 90123 - ABC transporter transmembrane region | 0.005441 | INHERITED FROM: Colorectal Neoplasms || Gastrointestinal Neoplasms || Intestinal Neoplasms |
52540,90123,52540 52540 - P-loop containing nucleoside triphosphate hydrolases 90123 - ABC transporter transmembrane region 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.005441 | INHERITED FROM: Colorectal Neoplasms || Gastrointestinal Neoplasms || Intestinal Neoplasms |
47655,49417,55550 47655 - STAT 49417 - p53-like transcription factors 55550 - SH2 domain | 0.01801 | INHERITED FROM: Precursor Cell Lymphoblastic Leukemia-Lymphoma || Leukemia, Lymphoid |
48092,47655,49417 48092 - Transcription factor STAT-4 N-domain 47655 - STAT 49417 - p53-like transcription factors | 0.01801 | INHERITED FROM: Precursor Cell Lymphoblastic Leukemia-Lymphoma || Leukemia, Lymphoid |
52058,57184,52058 52058 - L domain-like 57184 - Growth factor receptor domain 52058 - L domain-like | 0.01801 | INHERITED FROM: Pharyngeal Neoplasms || Nasopharyngeal Neoplasms || Otorhinolaryngologic Neoplasms || Biliary Tract Neoplasms || Gallbladder Neoplasms |
47459,55785,55785 47459 - HLH, helix-loop-helix DNA-binding domain 55785 - PYP-like sensor domain (PAS domain) 55785 - PYP-like sensor domain (PAS domain) | 0.01801 | INHERITED FROM: Prostatic Neoplasms || Breast Neoplasms |
57184,57196,57184 57184 - Growth factor receptor domain 57196 - EGF/Laminin 57184 - Growth factor receptor domain | 0.03209 | INHERITED FROM: Neoplasms, Squamous Cell || Carcinoma, Squamous Cell || Skin Neoplasms |
57440,57440,57440 57440 - Kringle-like 57440 - Kringle-like 57440 - Kringle-like | 0.03209 | INHERITED FROM: Carcinoma, Hepatocellular || Astrocytoma || Neoplasm Metastasis || Neoplastic Processes || Glioma |
57196,57184,57184 57196 - EGF/Laminin 57184 - Growth factor receptor domain 57184 - Growth factor receptor domain | 0.03513 | INHERITED FROM: Neoplasms, Ductal, Lobular, and Medullary || Astrocytoma || Carcinoma, Ductal || Pancreatic Neoplasms || Glioblastoma || Skin Neoplasms || Glioma || Intestinal Neoplasms |
50129,51735,50129 50129 - GroES-like 51735 - NAD(P)-binding Rossmann-fold domains 50129 - GroES-like | 0.05757 | INHERITED FROM: Mouth Neoplasms |
52833,52833,52833 52833 - Thioredoxin-like 52833 - Thioredoxin-like 52833 - Thioredoxin-like | 0.1221 | INHERITED FROM: Prostatic Neoplasms || Genital Neoplasms, Male |
57196,57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.1345 | INHERITED FROM: Neoplasms, Ductal, Lobular, and Medullary || Neoplasms, Neuroepithelial || Astrocytoma || Carcinoma, Ductal || Pancreatic Neoplasms || Carcinoma, Pancreatic Ductal || Glioblastoma || Skin Neoplasms || Glioma |
57196,57184,57196 57196 - EGF/Laminin 57184 - Growth factor receptor domain 57196 - EGF/Laminin | 0.2066 | INHERITED FROM: Neoplasms, Ductal, Lobular, and Medullary || Astrocytoma || Carcinoma, Ductal || Carcinoma, Pancreatic Ductal || Glioblastoma || Glioma |
57196,57196,57184 57196 - EGF/Laminin 57196 - EGF/Laminin 57184 - Growth factor receptor domain | 0.2344 | INHERITED FROM: Neoplasms, Nerve Tissue || Neoplasms, Ductal, Lobular, and Medullary || Neoplasms, Germ Cell and Embryonal || Neoplasms, Neuroepithelial || Astrocytoma || Carcinoma, Ductal || Pancreatic Neoplasms || Breast Neoplasms || Endocrine Gland Neoplasms || Esophageal Squamous Cell Carcinoma || Carcinoma, Pancreatic Ductal || Neuroectodermal Tumors || Skin Neoplasms || Glioma |
53300,69318,69179 53300 - vWA-like 69318 - Integrin alpha N-terminal domain 69179 - Integrin domains | 0.2418 | INHERITED FROM: Leukemia, Promyelocytic, Acute || Leukemia, Myeloid, Acute || Leukemia || Leukemia, Myeloid |
81296,81296,81296 81296 - E set domains 81296 - E set domains 81296 - E set domains | 0.2909 | INHERITED FROM: Neoplasms, Connective and Soft Tissue || Neoplasms, Connective Tissue || Sarcoma |
69318,69179,69179 69318 - Integrin alpha N-terminal domain 69179 - Integrin domains 69179 - Integrin domains | 0.3105 | INHERITED FROM: Leukemia, Promyelocytic, Acute |
49899,57196,57196 49899 - Concanavalin A-like lectins/glucanases 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.3971 | INHERITED FROM: Esophageal Neoplasms || Esophageal Squamous Cell Carcinoma |
57667,57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 0.4577 | INHERITED FROM: Gastrointestinal Stromal Tumors |
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
47986,47986,52129 47986 - DEATH domain 47986 - DEATH domain 52129 - Caspase-like | 0 | Direct |
57196,57196,90193 57196 - EGF/Laminin 57196 - EGF/Laminin 90193 - Notch domain | 0 | Direct |
100895,100895,100895 100895 - Kazal-type serine protease inhibitors 100895 - Kazal-type serine protease inhibitors 100895 - Kazal-type serine protease inhibitors | 0 | Direct |
49785,57184,49265 49785 - Galactose-binding domain-like 57184 - Growth factor receptor domain 49265 - Fibronectin type III | 0 | Direct |
49562,48371,56112 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) 48371 - ARM repeat 56112 - Protein kinase-like (PK-like) | 0 | Direct |
55550,56112,56112 55550 - SH2 domain 56112 - Protein kinase-like (PK-like) 56112 - Protein kinase-like (PK-like) | 0 | Direct |
52058,48726,48726 52058 - L domain-like 48726 - Immunoglobulin 48726 - Immunoglobulin | 0 | Direct |
50729,55550,56112 50729 - PH domain-like 55550 - SH2 domain 56112 - Protein kinase-like (PK-like) | 0 | Direct |
54791,54791,54791 54791 - Eukaryotic type KH-domain (KH-domain type I) 54791 - Eukaryotic type KH-domain (KH-domain type I) 54791 - Eukaryotic type KH-domain (KH-domain type I) | 0 | Direct |
49503,49503,49503 49503 - Cupredoxins 49503 - Cupredoxins 49503 - Cupredoxins | 0 | Direct |
57924,57924,57924 57924 - Inhibitor of apoptosis (IAP) repeat 57924 - Inhibitor of apoptosis (IAP) repeat 57924 - Inhibitor of apoptosis (IAP) repeat | 0 | Direct |
57184,52058,57184 57184 - Growth factor receptor domain 52058 - L domain-like 57184 - Growth factor receptor domain | 0 | Direct |
90123,52540,90123 90123 - ABC transporter transmembrane region 52540 - P-loop containing nucleoside triphosphate hydrolases 90123 - ABC transporter transmembrane region | 0.005441 | Inherited |
52540,90123,52540 52540 - P-loop containing nucleoside triphosphate hydrolases 90123 - ABC transporter transmembrane region 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.005441 | Inherited |
47655,49417,55550 47655 - STAT 49417 - p53-like transcription factors 55550 - SH2 domain | 0.01801 | Inherited |
48092,47655,49417 48092 - Transcription factor STAT-4 N-domain 47655 - STAT 49417 - p53-like transcription factors | 0.01801 | Inherited |
52058,57184,52058 52058 - L domain-like 57184 - Growth factor receptor domain 52058 - L domain-like | 0.01801 | Inherited |
47459,55785,55785 47459 - HLH, helix-loop-helix DNA-binding domain 55785 - PYP-like sensor domain (PAS domain) 55785 - PYP-like sensor domain (PAS domain) | 0.01801 | Inherited |
57184,57196,57184 57184 - Growth factor receptor domain 57196 - EGF/Laminin 57184 - Growth factor receptor domain | 0.03209 | Inherited |
57440,57440,57440 57440 - Kringle-like 57440 - Kringle-like 57440 - Kringle-like | 0.03209 | Inherited |
57196,57184,57184 57196 - EGF/Laminin 57184 - Growth factor receptor domain 57184 - Growth factor receptor domain | 0.03513 | Inherited |
50129,51735,50129 50129 - GroES-like 51735 - NAD(P)-binding Rossmann-fold domains 50129 - GroES-like | 0.05757 | Inherited |
52833,52833,52833 52833 - Thioredoxin-like 52833 - Thioredoxin-like 52833 - Thioredoxin-like | 0.1221 | Inherited |
57196,57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.1345 | Inherited |
57196,57184,57196 57196 - EGF/Laminin 57184 - Growth factor receptor domain 57196 - EGF/Laminin | 0.2066 | Inherited |
57196,57196,57184 57196 - EGF/Laminin 57196 - EGF/Laminin 57184 - Growth factor receptor domain | 0.2344 | Inherited |
53300,69318,69179 53300 - vWA-like 69318 - Integrin alpha N-terminal domain 69179 - Integrin domains | 0.2418 | Inherited |
81296,81296,81296 81296 - E set domains 81296 - E set domains 81296 - E set domains | 0.2909 | Inherited |
69318,69179,69179 69318 - Integrin alpha N-terminal domain 69179 - Integrin domains 69179 - Integrin domains | 0.3105 | Inherited |
49899,57196,57196 49899 - Concanavalin A-like lectins/glucanases 57196 - EGF/Laminin 57196 - EGF/Laminin | 0.3971 | Inherited |
57667,57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 0.4577 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Plot distribution on species Tree Of Life (sTOL) for Superfamily and/or Family domains annotated by this CD term
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Plot tree as:
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Download Newick format tree:
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( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domain
architecture data for all genomes in SUPERFAMILY. The PAUP
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Plot distribution on species Tree Of Life (sTOL) for single supra-domains annotated by this CD term
 |
Plot tree as:
| |
Download Newick format tree:
| |
Browsing in TREE OF LIFE:
|
( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
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