Domain combination pairs in Candidatus Moranella endobia PCIT

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

246 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N)	Superfamily (C)	Number of occurrances	Number unique
Nucleotidylyl transferase	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	6	6
Actin-like ATPase domain	Actin-like ATPase domain	6	2
P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	5	5
Nucleic acid-binding proteins	Class II aaRS and biotin synthetases	4	3
NAD(P)-binding Rossmann-fold domains	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	4	2
P-loop containing nucleoside triphosphate hydrolases	Translation proteins	4	4
ABC transporter transmembrane region	P-loop containing nucleoside triphosphate hydrolases	3	1
Class II aaRS and biotin synthetases	Class II aaRS ABD-related	3	3
ValRS/IleRS/LeuRS editing domain	Nucleotidylyl transferase	3	3
Alpha-L RNA-binding motif	Pseudouridine synthase	3	1
Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	3	3
ValRS/IleRS/LeuRS editing domain	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	3	3
Nucleic acid-binding proteins	Nucleic acid-binding proteins	3	3
Thiamin diphosphate-binding fold (THDP-binding)	TK C-terminal domain-like	3	3
P-loop containing nucleoside triphosphate hydrolases	EF-G C-terminal domain-like	3	3
P-loop containing nucleoside triphosphate hydrolases	post-AAA+ oligomerization domain-like	3	2
EF-G C-terminal domain-like	EF-G C-terminal domain-like	3	3
P-loop containing nucleoside triphosphate hydrolases	Ribosomal protein S5 domain 2-like	2	2
PreATP-grasp domain	Glutathione synthetase ATP-binding domain-like	2	2
Translation proteins	EF-G C-terminal domain-like	2	2
Nucleic acid-binding proteins	P-loop containing nucleoside triphosphate hydrolases	2	2
Nucleic acid-binding proteins	Translation proteins SH3-like domain	2	2
Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	2	2
tRNA-binding arm	Class II aaRS and biotin synthetases	2	1
Class II aaRS and biotin synthetases	ThrRS/AlaRS common domain	2	2
P-loop containing nucleoside triphosphate hydrolases	Restriction endonuclease-like	2	2
Nucleotidyltransferase	Poly A polymerase C-terminal region-like	2	2
Sigma2 domain of RNA polymerase sigma factors	Sigma3 and sigma4 domains of RNA polymerase sigma factors	2	2
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	Ribosomal protein S5 domain 2-like	2	2
Nucleic acid-binding proteins	RuvA domain 2-like	2	2
Penicillin binding protein dimerisation domain	beta-lactamase/transpeptidase-like	2	1
Ribosomal protein S5 domain 2-like	Nucleic acid-binding proteins	1	1
Enolase N-terminal domain-like	Enolase C-terminal domain-like	1	1
Ribosomal protein S5 domain 2-like	Ribonuclease PH domain 2-like	1	1
N-terminal domain of MutM-like DNA repair proteins	S13-like H2TH domain	1	1
Nucleotidylyl transferase	tRNA-binding arm	1	1
Glutathione synthetase ATP-binding domain-like	Rudiment single hybrid motif	1	1
Class II aaRS and biotin synthetases	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	1	1
S-adenosyl-L-methionine-dependent methyltransferases	Putative methyltransferase TM0872, insert domain	1	1
Transcription factor NusA, N-terminal domain	Prokaryotic type KH domain (KH-domain type II)	1	1
Translation proteins	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	1	1
Ribulose-phoshate binding barrel	Ribulose-phoshate binding barrel	1	1
GroEL equatorial domain-like	GroEL apical domain-like	1	1
Flavoproteins	Riboflavin synthase domain-like	1	1
Single hybrid motif	CoA-dependent acyltransferases	1	1
Nucleotidylyl transferase	An anticodon-binding domain of class I aminoacyl-tRNA synthetases	1	1
PUA domain-like	Ribosomal protein S5 domain 2-like	1	1
Glutathione synthetase ATP-binding domain-like	Glutathione synthetase ATP-binding domain-like	1	1
R1 subunit of ribonucleotide reductase, N-terminal domain	PFL-like glycyl radical enzymes	1	1
Glutathione synthetase ATP-binding domain-like	Methylglyoxal synthase-like	1	1
HprK N-terminal domain-like	Isocitrate/Isopropylmalate dehydrogenase-like	1	1
TK C-terminal domain-like	alpha-helical ferredoxin	1	1
Adenine nucleotide alpha hydrolases-like	MesJ substrate recognition domain-like	1	1
Folate-binding domain	Aminomethyltransferase beta-barrel domain	1	1
Double Clp-N motif	P-loop containing nucleoside triphosphate hydrolases	1	1
DNA repair protein MutS, domain I	P-loop containing nucleoside triphosphate hydrolases	1	1
Fe,Mn superoxide dismutase (SOD), N-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	1	1
P-loop containing nucleoside triphosphate hydrolases	FtsH protease domain-like	1	1
Ribonuclease PH domain 2-like	Nucleic acid-binding proteins	1	1
DNA primase core	DNA primase DnaG, C-terminal domain	1	1
YbaK/ProRS associated domain	Class II aaRS ABD-related	1	1
P-loop containing nucleoside triphosphate hydrolases	Pre-protein crosslinking domain of SecA	1	1
P-loop containing nucleoside triphosphate hydrolases	Prokaryotic type KH domain (KH-domain type II)	1	1
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain	Nucleotidylyl transferase	1	1
CheY-like	C-terminal effector domain of the bipartite response regulators	1	1
NAD(P)-binding Rossmann-fold domains	Siroheme synthase middle domains-like	1	1
Putative DNA-binding domain	Translation proteins	1	1
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3	Nucleic acid-binding proteins	1	1
TGS-like	ThrRS/AlaRS common domain	1	1
Transcription factor NusA, N-terminal domain	Nucleic acid-binding proteins	1	1
Translation proteins	Initiation factor IF2/eIF5b, domain 3	1	1
PreATP-grasp domain	Methylglyoxal synthase-like	1	1
RuvA domain 2-like	DNA helicase RuvA subunit, C-terminal domain	1	1
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	ThrRS/AlaRS common domain	1	1
PK beta-barrel domain-like	PK C-terminal domain-like	1	1
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	1	1
Glucocorticoid receptor-like (DNA-binding domain)	P-loop containing nucleoside triphosphate hydrolases	1	1
Nucleic acid-binding proteins	DNA helicase RuvA subunit, C-terminal domain	1	1
P-loop containing nucleoside triphosphate hydrolases	Isocitrate/Isopropylmalate dehydrogenase-like	1	1
Ribosomal protein S5 domain 2-like	DNA mismatch repair protein MutL	1	1
N-utilization substance G protein NusG, N-terminal domain	Translation proteins SH3-like domain	1	1
Domain of the SRP/SRP receptor G-proteins	P-loop containing nucleoside triphosphate hydrolases	1	1
UBA-like	Elongation factor Ts (EF-Ts), dimerisation domain	1	1
PUA domain-like	P-loop containing nucleoside triphosphate hydrolases	1	1
Phosphohistidine domain	Phosphoenolpyruvate/pyruvate domain	1	1
L9 N-domain-like	Ribosomal protein L9 C-domain	1	1
Methionyl-tRNA synthetase (MetRS), Zn-domain	Nucleotidylyl transferase	1	1
Ribonuclease PH domain 2-like	Eukaryotic type KH-domain (KH-domain type I)	1	1
Thiamin diphosphate-binding fold (THDP-binding)	alpha-helical ferredoxin	1	1
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	CoA-dependent acyltransferases	1	1
P-loop containing nucleoside triphosphate hydrolases	HprK N-terminal domain-like	1	1
Insert subdomain of RNA polymerase alpha subunit	C-terminal domain of RNA polymerase alpha subunit	1	1
L30e-like	alpha/beta knot	1	1
DnaK suppressor protein DksA, alpha-hairpin domain	Glucocorticoid receptor-like (DNA-binding domain)	1	1
Glutathione synthetase ATP-binding domain-like	Carbamoyl phosphate synthetase, large subunit connection domain	1	1
DNA repair protein MutS, domain III	P-loop containing nucleoside triphosphate hydrolases	1	1
Pseudouridine synthase	PUA domain-like	1	1
Class II aaRS and biotin synthetases	GAD domain-like	1	1
Band 7/SPFH domain	Band 7/SPFH domain	1	1
Ribonuclease H-like	DNA/RNA polymerases	1	1
DNA repair protein MutS, domain I	DNA repair protein MutS, domain III	1	1
Translation initiation factor IF3, N-terminal domain	Translation initiation factor IF3, C-terminal domain	1	1
P-loop containing nucleoside triphosphate hydrolases	TGS-like	1	1
Single hybrid motif	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	1	1
P-loop containing nucleoside triphosphate hydrolases	Initiation factor IF2/eIF5b, domain 3	1	1
Putative DNA-binding domain	Class II aaRS and biotin synthetases	1	1
DnaJ/Hsp40 cysteine-rich domain	HSP40/DnaJ peptide-binding domain	1	1
TK C-terminal domain-like	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III	1	1
FKBP-like	FKBP-like	1	1
P-loop containing nucleoside triphosphate hydrolases	Helical scaffold and wing domains of SecA	1	1
P-loop containing nucleoside triphosphate hydrolases	"Winged helix" DNA-binding domain	1	1
DNA ligase/mRNA capping enzyme, catalytic domain	BRCT domain	1	1
Formyltransferase	FMT C-terminal domain-like	1	1
Chaperone J-domain	HSP40/DnaJ peptide-binding domain	1	1
Class II aaRS and biotin synthetases	Translation proteins	1	1
Insert subdomain of RNA polymerase alpha subunit	RBP11-like subunits of RNA polymerase	1	1
PheT/TilS domain	Class II aaRS and biotin synthetases	1	1
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	Type II DNA topoisomerase	1	1
Lysozyme-like	beta-lactamase/transpeptidase-like	1	1
5' to 3' exonuclease, C-terminal subdomain	DNA/RNA polymerases	1	1
Adenine nucleotide alpha hydrolases-like	PheT/TilS domain	1	1
Zinc beta-ribbon	DNA primase DnaG, C-terminal domain	1	1
Ribosomal protein L7/12, oligomerisation (N-terminal) domain	ClpS-like	1	1
Actin-like ATPase domain	Heat shock protein 70kD (HSP70), peptide-binding domain	1	1
4Fe-4S ferredoxins	ADC-like	1	1
RuvA domain 2-like	BRCT domain	1	1
4Fe-4S ferredoxins	Formate dehydrogenase/DMSO reductase, domains 1-3	1	1
Translation proteins	Translation proteins	1	1
Ribonuclease PH domain 2-like	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3	1	1
MesJ substrate recognition domain-like	PheT/TilS domain	1	1
Class II aaRS and biotin synthetases	YbaK/ProRS associated domain	1	1
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III	alpha-helical ferredoxin	1	1
Translation proteins	ThrRS/AlaRS common domain	1	1
Prokaryotic type KH domain (KH-domain type II)	Ribosomal protein S3 C-terminal domain	1	1
Siroheme synthase middle domains-like	Tetrapyrrole methylase	1	1
Nitrite and sulphite reductase 4Fe-4S domain-like	Nitrite and sulphite reductase 4Fe-4S domain-like	1	1
2Fe-2S ferredoxin-like	ADC-like	1	1
Translation proteins	Ribosomal protein S5 domain 2-like	1	1
Periplasmic binding protein-like II	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain	1	1
P-loop containing nucleoside triphosphate hydrolases	RecA protein, C-terminal domain	1	1
GroEL equatorial domain-like	GroEL equatorial domain-like	1	1
2Fe-2S ferredoxin-like	Formate dehydrogenase/DMSO reductase, domains 1-3	1	1
Thiamin diphosphate-binding fold (THDP-binding)	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III	1	1
Triger factor/SurA peptide-binding domain-like	FKBP-like	1	1
NAD(P)-binding Rossmann-fold domains	Succinyl-CoA synthetase domains	1	1
Carbamoyl phosphate synthetase, large subunit connection domain	Methylglyoxal synthase-like	1	1
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	tRNA-binding arm	1	1
Putative DNA-binding domain	P-loop containing nucleoside triphosphate hydrolases	1	1
FAD/NAD(P)-binding domain	FAD/NAD-linked reductases, dimerisation (C-terminal) domain	1	1
Nqo1 middle domain-like	Nqo1C-terminal domain-like	1	1
RBP11-like subunits of RNA polymerase	C-terminal domain of RNA polymerase alpha subunit	1	1
Obg GTP-binding protein N-terminal domain	P-loop containing nucleoside triphosphate hydrolases	1	1
HesB-like domain	Fe-S cluster assembly (FSCA) domain-like	1	1
Ribonuclease PH domain 2-like	Ribonuclease PH domain 2-like	1	1
Aminoacid dehydrogenase-like, N-terminal domain	NAD(P)-binding Rossmann-fold domains	1	1
Glutathione synthetase ATP-binding domain-like	Succinyl-CoA synthetase domains	1	1
Nqo1 FMN-binding domain-like	Nqo1C-terminal domain-like	1	1
Tubulin nucleotide-binding domain-like	Tubulin C-terminal domain-like	1	1
PreATP-grasp domain	Rudiment single hybrid motif	1	1
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	DNA mismatch repair protein MutL	1	1
P-loop containing nucleoside triphosphate hydrolases	Signal peptide-binding domain	1	1
DNA ligase/mRNA capping enzyme, catalytic domain	RuvA domain 2-like	1	1
FabD/lysophospholipase-like	Probable ACP-binding domain of malonyl-CoA ACP transacylase	1	1
NAD(P)-binding Rossmann-fold domains	Tetrapyrrole methylase	1	1
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain	Phosphoenolpyruvate/pyruvate domain	1	1
DNA repair protein MutS, domain II	P-loop containing nucleoside triphosphate hydrolases	1	1
Ribosomal protein S5 domain 2-like	Type II DNA topoisomerase	1	1
Nucleic acid-binding proteins	PheT/TilS domain	1	1
Nucleic acid-binding proteins	Rad51 N-terminal domain-like	1	1
ThrRS/AlaRS common domain	Class II aaRS ABD-related	1	1
TGS-like	Class II aaRS and biotin synthetases	1	1
GreA transcript cleavage protein, N-terminal domain	FKBP-like	1	1
Class II aaRS and biotin synthetases	C-terminal domain of transcriptional repressors	1	1
Ribosomal protein S5 domain 2-like	Eukaryotic type KH-domain (KH-domain type I)	1	1
PIN domain-like	DNA/RNA polymerases	1	1
PreATP-grasp domain	Carbamoyl phosphate synthetase, large subunit connection domain	1	1
P-loop containing nucleoside triphosphate hydrolases	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	1	1
Ribosomal L11/L12e N-terminal domain	Ribosomal protein L11, C-terminal domain	1	1
PheT/TilS domain	Putative DNA-binding domain	1	1
Nucleic acid-binding proteins	GAD domain-like	1	1
Chaperone J-domain	DnaJ/Hsp40 cysteine-rich domain	1	1
Phospholipase D/nuclease	Phospholipase D/nuclease	1	1
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	Translation proteins	1	1
Rad51 N-terminal domain-like	Rad51 N-terminal domain-like	1	1
Type II DNA topoisomerase	GyrA/ParC C-terminal domain-like	1	1
Nucleotidylyl transferase	Ribosomal protein L25-like	1	1
Rho N-terminal domain-like	P-loop containing nucleoside triphosphate hydrolases	1	1
Nucleic acid-binding proteins	Anticodon-binding domain of PheRS	1	1
PheT/TilS domain	Anticodon-binding domain of PheRS	1	1
Sigma3 and sigma4 domains of RNA polymerase sigma factors	Sigma3 and sigma4 domains of RNA polymerase sigma factors	1	1
PK beta-barrel domain-like	Phosphoenolpyruvate/pyruvate domain	1	1
Trypsin-like serine proteases	PDZ domain-like	1	1
DNA clamp	DNA clamp	1	1
PreATP-grasp domain	PreATP-grasp domain	1	1
Riboflavin synthase domain-like	Ferredoxin reductase-like, C-terminal NADP-linked domain	1	1
Prokaryotic type KH domain (KH-domain type II)	Prokaryotic type KH domain (KH-domain type II)	1	1
Prokaryotic type KH domain (KH-domain type II)	Rad51 N-terminal domain-like	1	1
Phosphoenolpyruvate/pyruvate domain	PK C-terminal domain-like	1	1
TGS-like	Class II aaRS ABD-related	1	1
Nucleic acid-binding proteins	Putative DNA-binding domain	1	1
Putative DNA-binding domain	Initiation factor IF2/eIF5b, domain 3	1	1
Class II aaRS and biotin synthetases	Anticodon-binding domain of PheRS	1	1
Rho N-terminal domain-like	Nucleic acid-binding proteins	1	1
Thiolase-like	Thiolase-like	1	1
N-terminal domain of MutM-like DNA repair proteins	Glucocorticoid receptor-like (DNA-binding domain)	1	1
Translation proteins	PRC-barrel domain	1	1
Prokaryotic type I DNA topoisomerase	Zinc beta-ribbon	1	1
Ribosomal protein S5 domain 2-like	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3	1	1
Transcription factor NusA, N-terminal domain	Rad51 N-terminal domain-like	1	1
Nucleic acid-binding proteins	BRCT domain	1	1
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain	Phosphohistidine domain	1	1
S13-like H2TH domain	Glucocorticoid receptor-like (DNA-binding domain)	1	1
PDZ domain-like	PDZ domain-like	1	1
HSP40/DnaJ peptide-binding domain	HSP40/DnaJ peptide-binding domain	1	1
Nqo5-like	HydB/Nqo4-like	1	1
Coiled-coil domain of nucleotide exchange factor GrpE	Head domain of nucleotide exchange factor GrpE	1	1
Nucleic acid-binding proteins	Prokaryotic type KH domain (KH-domain type II)	1	1
PIN domain-like	5' to 3' exonuclease, C-terminal subdomain	1	1
EF-G C-terminal domain-like	Ribosomal protein S5 domain 2-like	1	1
Eukaryotic type KH-domain (KH-domain type I)	Nucleic acid-binding proteins	1	1
Putative DNA-binding domain	Anticodon-binding domain of PheRS	1	1
DNA ligase/mRNA capping enzyme, catalytic domain	Nucleic acid-binding proteins	1	1
Carbamoyl phosphate synthetase, small subunit N-terminal domain	Class I glutamine amidotransferase-like	1	1
Nucleotidylyl transferase	Alpha-L RNA-binding motif	1	1
dsRNA-binding domain-like	Ribosomal protein S5 domain 2-like	1	1
Nitrite/Sulfite reductase N-terminal domain-like	Nitrite and sulphite reductase 4Fe-4S domain-like	1	1
ValRS/IleRS/LeuRS editing domain	tRNA-binding arm	1	1
Nqo1 FMN-binding domain-like	Nqo1 middle domain-like	1	1
N-terminal domain of DnaB helicase	P-loop containing nucleoside triphosphate hydrolases	1	1
Pre-protein crosslinking domain of SecA	Helical scaffold and wing domains of SecA	1	1
PIN domain-like	Ribonuclease H-like	1	1
2Fe-2S ferredoxin-like	4Fe-4S ferredoxins	1	1
Zinc beta-ribbon	DNA primase core	1	1
Riboflavin synthase domain-like	Riboflavin synthase domain-like	1	1
Nitrite/Sulfite reductase N-terminal domain-like	Nitrite/Sulfite reductase N-terminal domain-like	1	1
Ribosomal protein L6	Ribosomal protein L6	1	1
Formate dehydrogenase/DMSO reductase, domains 1-3	ADC-like	1	1
PTS system fructose IIA component-like	PTS IIb component	1	1
Flavoproteins	Ferredoxin reductase-like, C-terminal NADP-linked domain	1	1
RNase III domain-like	dsRNA-binding domain-like	1	1
DNA repair protein MutS, domain I	DNA repair protein MutS, domain II	1	1
Zinc beta-ribbon	Zinc beta-ribbon	1	1
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3	Eukaryotic type KH-domain (KH-domain type I)	1	1
DNA repair protein MutS, domain II	DNA repair protein MutS, domain III	1	1
Methionyl-tRNA synthetase (MetRS), Zn-domain	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	1	1
5' to 3' exonuclease, C-terminal subdomain	Ribonuclease H-like	1	1

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