Plant ANatomical entity (PAN): vascular leaf 

Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children)	AP term [AP ID] <#Children>	#Domains (Superfamily|Family)	#Supra-domain (Single|Duplex|Triple)
+ + + + + + 6:	plant anatomical entity [PO:0025131] <3>
+ + + + + 5:	collective plant structure [PO:0025497] <2>	(568|768)	(570|338|104)
+ + + + + 5:	plant structure [PO:0009011] <13>	(589|796)	(590|352|108)
+ + + + 4:	multi-tissue plant structure [PO:0025496] <4>	(317|465)	(320|215|71)
+ + + + 4:	collective plant organ structure [PO:0025007] <7>	(531|726)	(533|315|98)
+ + + 3:	shoot system [PO:0009006] <18>	(516|705)	(517|311|98)
+ + + 3:	plant organ [PO:0009008] <10>	(308|459)	(311|212|70)
+ + 2:	phyllome [PO:0006001] <21>	(245|378)	(249|183|65)
+ 1:	leaf [PO:0025034] <12>	(184|297)	(186|141|53)
0:	vascular leaf [PO:0009025] <36>	(176|291)	(178|140|53)
- 1:	petiole [PO:0020038] <11>	(110|183)	(111|81|34)
- 1:	cotyledon [PO:0020030] <6>	(102|181)	(103|86|36)
- 1:	compound leaf [PO:0020043] <4>	(0|0)	(0|0|0)
- 1:	bundle sheath [PO:0006023] <3>	(0|0)	(0|0|0)
- 1:	leaf sheath [PO:0020104] <3>	(0|0)	(0|0|0)
- 1:	adult vascular leaf [PO:0006340] <2>	(5|5)	(5|4|1)
- 1:	leaf vascular system [PO:0000036] <2>	(4|6)	(4|2|0)
- 1:	palisade mesophyll [PO:0005648] <2>	(0|0)	(0|0|0)
- 1:	short cell [PO:0004718] <2>	(0|0)	(0|0|0)
- 1:	spongy mesophyll [PO:0005647] <2>	(0|0)	(0|0|0)
- 1:	unifacial vascular leaf [PO:0025328] <2>	(0|0)	(0|0|0)
- 1:	cigar leaf [PO:0025130] <1>	(0|0)	(0|0|0)
- 1:	stipule [PO:0020041] <1>	(2|1)	(2|1|0)
- 1:	transition vascular leaf [PO:0008018] <1>	(0|0)	(0|0|0)
- 1:	bulliform cell [PO:0004001]	(0|0)	(0|0|0)
- 1:	cauline leaf [PO:0000013]	(117|198)	(118|90|36)
- 1:	ceonosorus [PO:0025360]	(0|0)	(0|0|0)
- 1:	embryo leaf [PO:0006338]	(0|0)	(0|0|0)
- 1:	juvenile vascular leaf [PO:0006339]	(5|5)	(5|4|1)
- 1:	leaf abaxial meristem [PO:0025403]	(0|0)	(0|0|0)
- 1:	leaf abscission zone [PO:0006501]	(0|0)	(0|0|0)
- 1:	leaf adaxial meristem [PO:0025401]	(0|0)	(0|0|0)
- 1:	leaf apex tendril [PO:0025363]	(0|0)	(0|0|0)
- 1:	leaf collar [PO:0006012]	(0|0)	(0|0|0)
- 1:	leaf endodermis [PO:0005060]	(0|0)	(0|0|0)
- 1:	leaf marginal meristem [PO:0025405]	(0|0)	(0|0|0)
- 1:	leaf plate meristem [PO:0025429]	(0|0)	(0|0|0)
- 1:	leaf tendril [PO:0025361]	(0|0)	(0|0|0)
- 1:	ligule [PO:0020105]	(0|0)	(0|0|0)
- 1:	long cell [PO:0004717]	(0|0)	(0|0|0)
- 1:	rosette leaf [PO:0000014]	(11|15)	(11|9|2)
- 1:	simple leaf [PO:0020042]	(0|0)	(0|0|0)
- 1:	sorus [PO:0025359]	(0|0)	(0|0|0)
- 1:	spine leaf [PO:0025173]	(0|0)	(0|0|0)
- 1:	tubercle [PO:0025352]	(0|0)	(0|0|0)
- 1:	vascular leaf meristematic apical cell [PO:0030012]	(0|0)	(0|0|0)

Superfamily

Highlighted in gray are those with FDR_all>0.001

SCOP term	FDR (all)	Annotation (direct or inherited)
Signal peptide-binding domain	0	DIRECT
E2F-DP heterodimerization region	0	DIRECT
SH3-domain	0	DIRECT
RraA-like	0	DIRECT
DNA repair protein MutS, domain I	0	DIRECT
Lipocalins	0	DIRECT
LysM domain	0	DIRECT
Head domain of nucleotide exchange factor GrpE	0	DIRECT
TATA-box binding protein-like	0	DIRECT
Composite domain of metallo-dependent hydrolases	0	DIRECT
RuBisCO, small subunit	0	DIRECT
Phosphofructokinase	0	DIRECT
Ribosomal L11/L12e N-terminal domain	0	DIRECT
C-terminal, gelsolin-like domain of Sec23/24	0	DIRECT
Cdc48 domain 2-like	0	DIRECT
Ribosomal protein L30p/L7e	0	DIRECT
tRNA-binding arm	0	DIRECT
LeuD/IlvD-like	0	DIRECT
Ribosomal protein L31e	0	DIRECT
Phosphoglycerate kinase	0	DIRECT
lambda repressor-like DNA-binding domains	0	DIRECT
Creatinase/aminopeptidase	0	DIRECT
Crambin-like	0	DIRECT
Lesion bypass DNA polymerase (Y-family), little finger domain	0	DIRECT
Homocysteine S-methyltransferase	0	DIRECT
N-terminal, heterodimerisation domain of RBP7 (RpoE)	0	DIRECT
Staphylococcal nuclease	0	DIRECT
Putative isomerase YbhE	0	DIRECT
YrdC/RibB	0	DIRECT
Tautomerase/MIF	0	DIRECT
Transducin (alpha subunit), insertion domain	0	DIRECT
Tetrapyrrole methylase	0	DIRECT
Ribosomal protein L4	0	DIRECT
Electron transport accessory proteins	0	DIRECT
P-domain of calnexin/calreticulin	0	DIRECT
Single hybrid motif	0	DIRECT
Chelatase	0	DIRECT
FKBP-like	0	DIRECT
Mitochondrial glycoprotein MAM33-like	0	DIRECT
Clc chloride channel	0	DIRECT
Preprotein translocase SecE subunit	0	DIRECT
Sigma3 and sigma4 domains of RNA polymerase sigma factors	0	DIRECT
Prokaryotic type I DNA topoisomerase	0	DIRECT
Zn-finger domain of Sec23/24	0	DIRECT
Pentapeptide repeat-like	0	DIRECT
BolA-like	0	DIRECT
RuBisCo LSMT C-terminal, substrate-binding domain	0	DIRECT
Ribosomal protein L19 (L19e)	0	DIRECT
Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	0	DIRECT
Saposin	0	DIRECT
Folate-binding domain	0	DIRECT
Peptidyl-tRNA hydrolase-like	0	DIRECT
Expressed protein At2g23090/F21P24.15	0	DIRECT
Glycolipid transfer protein, GLTP	0	DIRECT
Ribosomal protein L39e	0	DIRECT
Hypothetical protein YjiA, C-terminal domain	0	DIRECT
Metallo-dependent hydrolases	0	DIRECT
LuxS/MPP-like metallohydrolase	0	DIRECT
Cu,Zn superoxide dismutase-like	0	DIRECT
Leukotriene A4 hydrolase N-terminal domain	0	DIRECT
AMPKBI-like	0	DIRECT
Inosine monophosphate dehydrogenase (IMPDH)	0	DIRECT
Ribosomal protein L13	0	DIRECT
beta-N-acetylhexosaminidase-like domain	0	DIRECT
Phosphoglucomutase, C-terminal domain	0	DIRECT
LDH C-terminal domain-like	0	DIRECT
Radical SAM enzymes	0	DIRECT
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1	0	DIRECT
Chorismate mutase II	0	DIRECT
N-terminal domain of the delta subunit of the F1F0-ATP synthase	0	DIRECT
PAP/Archaeal CCA-adding enzyme, C-terminal domain	0	DIRECT
Ligand-binding domain in the NO signalling and Golgi transport	0	DIRECT
FF domain	0	DIRECT
Phosphoglucomutase, first 3 domains	0	DIRECT
GlnB-like	0	DIRECT
Serine metabolism enzymes domain	0	DIRECT
FAH	0	DIRECT
SH2 domain	0	DIRECT
Sigma2 domain of RNA polymerase sigma factors	0	DIRECT
Heme oxygenase-like	0	DIRECT
Ribosomal protein L10-like	0	DIRECT
Diaminopimelate epimerase-like	0	DIRECT
S13-like H2TH domain	0	DIRECT
Ribosomal protein S2	0	DIRECT
Preprotein translocase SecY subunit	0	DIRECT
beta-carbonic anhydrase, cab	0	DIRECT
DNA repair protein MutS, domain II	0	DIRECT
Tetrahydrobiopterin biosynthesis enzymes-like	0	DIRECT
Ribosomal protein L16p/L10e	0	DIRECT
ssDNA-binding transcriptional regulator domain	0	DIRECT
GroEL-intermediate domain like	0	DIRECT
AlbA-like	0	DIRECT
GroEL equatorial domain-like	0	DIRECT
GroEL apical domain-like	0	DIRECT
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	0	DIRECT
Flavoproteins	0	DIRECT
Cytochrome c	0	DIRECT
FAD-dependent thiol oxidase	0	DIRECT
Nicotinate/Quinolinate PRTase C-terminal domain-like	0	DIRECT
Casein kinase II beta subunit	0	DIRECT
Aconitase iron-sulfur domain	0	DIRECT
eIF1-like	0	DIRECT
Seven-hairpin glycosidases	0	DIRECT
Succinyl-CoA synthetase domains	0	DIRECT
CYTH-like phosphatases	0	DIRECT
Glutamine synthetase, N-terminal domain	0	DIRECT
alpha-helical ferredoxin	0	DIRECT
R3H domain	0	DIRECT
Poly A polymerase C-terminal region-like	0	DIRECT
Peptide methionine sulfoxide reductase	0	DIRECT
Oxidoreductase molybdopterin-binding domain	0	DIRECT
SMR domain-like	0	DIRECT
Prokaryotic ribosomal protein L17	0	DIRECT
MurD-like peptide ligases, catalytic domain	0	DIRECT
Creatinase/prolidase N-terminal domain	0	DIRECT
DNA clamp	0	DIRECT
Ribosomal protein S6	0	DIRECT
6-phosphogluconate dehydrogenase C-terminal domain-like	0	DIRECT
D-ribose-5-phosphate isomerase (RpiA), lid domain	0	DIRECT
PDZ domain-like	0	DIRECT
Magnesium transport protein CorA, transmembrane region	0	DIRECT
Nitrite and sulphite reductase 4Fe-4S domain-like	0	DIRECT
MurD-like peptide ligases, peptide-binding domain	0	DIRECT
Peptidase/esterase 'gauge' domain	0	DIRECT
Ribosomal proteins S24e, L23 and L15e	0	DIRECT
TAZ domain	0	DIRECT
Ribosomal protein L29 (L29p)	0	DIRECT
ATP synthase (F1-ATPase), gamma subunit	0	DIRECT
Lipoxigenase	0	DIRECT
SIS domain	0	DIRECT
Ribosomal protein L14	0	DIRECT
NSFL1 (p97 ATPase) cofactor p47, SEP domain	0	DIRECT
Cryptochrome/photolyase FAD-binding domain	0	DIRECT
UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	0	DIRECT
Alpha subunit of glutamate synthase, C-terminal domain	0	DIRECT
S-adenosylmethionine synthetase	0	DIRECT
ADC-like	0	DIRECT
FAD/NAD-linked reductases, dimerisation (C-terminal) domain	0	DIRECT
Tim10-like	0	DIRECT
Acyl-CoA binding protein	0	DIRECT
Helical domain of Sec23/24	0	DIRECT
Glutamine synthetase/guanido kinase	0	DIRECT
Nicotinate/Quinolinate PRTase N-terminal domain-like	0	DIRECT
RibA-like	0	DIRECT
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	0	DIRECT
NHL repeat	0	DIRECT
HesB-like domain	0	DIRECT
Heme-dependent catalase-like	0	DIRECT
Coiled-coil domain of nucleotide exchange factor GrpE	0	DIRECT
Dimeric alpha+beta barrel	0	DIRECT
XPC-binding domain	0	DIRECT
Globin-like	0	DIRECT
Restriction endonuclease-like	0	DIRECT
ClpP/crotonase	0.0003659	DIRECT
Aldolase	0.0003941	DIRECT
Thioredoxin-like	0.0004975	DIRECT
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	0.001778	INHERITED FROM: rosette leaf
Glutathione synthetase ATP-binding domain-like	0.008289	INHERITED FROM: cauline leaf
Thiolase-like	0.009563	INHERITED FROM: cauline leaf || rosette leaf
CheY-like	0.0589	INHERITED FROM: leaf vascular system || juvenile vascular leaf
MCP/YpsA-like	0.06273	INHERITED FROM: rosette leaf
Amidase signature (AS) enzymes	0.2057	INHERITED FROM: rosette leaf
Beta-D-glucan exohydrolase, C-terminal domain	0.2911	INHERITED FROM: adult vascular leaf || juvenile vascular leaf
POZ domain	0.5152	INHERITED FROM: rosette leaf
(Trans)glycosidases	0.6461	INHERITED FROM: adult vascular leaf || juvenile vascular leaf
RNA-binding domain, RBD	0.6679	INHERITED FROM: petiole
Concanavalin A-like lectins/glucanases	0.7885	INHERITED FROM: adult vascular leaf
Bet v1-like	0.8041	INHERITED FROM: stipule
Galactose-binding domain-like	0.8919	INHERITED FROM: adult vascular leaf || rosette leaf || juvenile vascular leaf
Arabinanase/levansucrase/invertase	0.9353	INHERITED FROM: adult vascular leaf
Cupredoxins	1	INHERITED FROM: cotyledon vascular system || leaf vascular system || rosette leaf
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	1	INHERITED FROM: cotyledon vascular system
Subtilisin-like	1	INHERITED FROM: leaf vascular system
TRAF domain-like	1	INHERITED FROM: rosette leaf
FtsH protease domain-like	1	INHERITED FROM: cauline leaf || cotyledon || petiole
Homeodomain-like	1	INHERITED FROM: leaf vascular system || stipule || juvenile vascular leaf

Family

Highlighted in gray are those with FDR_all>0.001

SCOP term	FDR (all)	Annotation (direct or inherited)
GroEL-like chaperone, apical domain	0	DIRECT
DNA repair glycosylase, 2 C-terminal domains	0	DIRECT
N-terminal, heterodimerisation domain of RBP7 (RpoE)	0	DIRECT
Phosphoglucomutase, C-terminal domain	0	DIRECT
FF domain	0	DIRECT
Pseudouridine synthase II TruB	0	DIRECT
Heme-dependent catalases	0	DIRECT
AMPKBI-like	0	DIRECT
Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	0	DIRECT
Plant lipoxigenases	0	DIRECT
Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain	0	DIRECT
Lipoxigenase N-terminal domain	0	DIRECT
DNase I-like	0	DIRECT
Glycerol-3-phosphate dehydrogenase	0	DIRECT
Aminoacid dehydrogenases	0	DIRECT
NADPH-cytochrome p450 reductase-like	0	DIRECT
gamma-carbonic anhydrase-like	0	DIRECT
SH2 domain	0	DIRECT
Aminomethyltransferase folate-binding domain	0	DIRECT
Sigma4 domain	0	DIRECT
NAD kinase-like	0	DIRECT
LeuD-like	0	DIRECT
Prolyl oligopeptidase, N-terminal domain	0	DIRECT
Allosteric chorismate mutase	0	DIRECT
Tim10/DDP	0	DIRECT
G domain-linked domain	0	DIRECT
Crambin-like	0	DIRECT
ATP synthase (F1-ATPase), gamma subunit	0	DIRECT
NSFL1 (p97 ATPase) cofactor p47, SEP domain	0	DIRECT
Poly A polymerase C-terminal region-like	0	DIRECT
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1	0	DIRECT
Trunk domain of Sec23/24	0	DIRECT
RWD domain	0	DIRECT
CoA-binding domain	0	DIRECT
PAPS reductase-like	0	DIRECT
(Glycosyl)asparaginase	0	DIRECT
Spermidine synthase	0	DIRECT
Ribosomal protein L29 (L29p)	0	DIRECT
HMGL-like	0	DIRECT
MPP-like	0	DIRECT
Leukotriene A4 hydrolase N-terminal domain	0	DIRECT
Ribosomal protein L4	0	DIRECT
Homoserine dehydrogenase-like	0	DIRECT
Group II chaperonin (CCT, TRIC), intermediate domain	0	DIRECT
HAT/Suf repeat	0	DIRECT
UDP-glucose pyrophosphorylase	0	DIRECT
3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB	0	DIRECT
Coiled-coil domain of nucleotide exchange factor GrpE	0	DIRECT
Reductases	0	DIRECT
E2F dimerization segment	0	DIRECT
Group II chaperonin (CCT, TRIC), apical domain	0	DIRECT
FAD-dependent thiol oxidase	0	DIRECT
Cdc48 domain 2-like	0	DIRECT
Rps19E-like	0	DIRECT
beta-Phosphoglucomutase-like	0	DIRECT
S-adenosylmethionine synthetase	0	DIRECT
ZZ domain	0	DIRECT
Methionine aminopeptidase, insert domain	0	DIRECT
RuBisCO, small subunit	0	DIRECT
XPF/Rad1/Mus81 nuclease	0	DIRECT
Glutamine synthetase, N-terminal domain	0	DIRECT
GABARAP-like	0	DIRECT
Poly A polymerase head domain-like	0	DIRECT
Nitrite and sulphite reductase 4Fe-4S domain-like	0	DIRECT
Transcriptional coactivator PC4 C-terminal domain	0	DIRECT
Mitochondrial glycoprotein MAM33-like	0	DIRECT
PDI-like	0	DIRECT
glucose-1-phosphate thymidylyltransferase	0	DIRECT
HesB-like domain	0	DIRECT
Swaposin	0	DIRECT
D-ribose-5-phosphate isomerase (RpiA), catalytic domain	0	DIRECT
GAF domain	0	DIRECT
Branched-chain alpha-keto acid dehydrogenase Pyr module	0	DIRECT
L23p	0	DIRECT
C-terminal, gelsolin-like domain of Sec23/24	0	DIRECT
Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain	0	DIRECT
Starch-binding domain	0	DIRECT
Aconitase iron-sulfur domain	0	DIRECT
Myf domain	0	DIRECT
FAH	0	DIRECT
Plant stress-induced protein	0	DIRECT
Ribosomal protein S6	0	DIRECT
Ribosomal protein S13	0	DIRECT
Hypothetical protein HI1317	0	DIRECT
Ubiquitin carboxyl-terminal hydrolase UCH-L	0	DIRECT
Ribosomal protein L30p/L7e	0	DIRECT
D-ribose-5-phosphate isomerase (RpiA), lid domain	0	DIRECT
Ribosomal L11/L12e N-terminal domain	0	DIRECT
rRNA adenine dimethylase-like	0	DIRECT
SH3-domain	0	DIRECT
LysM domain	0	DIRECT
Glucose 6-phosphate dehydrogenase-like	0	DIRECT
MoCo carrier protein-like	0	DIRECT
Cryptochrome/photolyase FAD-binding domain	0	DIRECT
SWIRM domain	0	DIRECT
NOL1/NOP2/sun	0	DIRECT
Subtilase propeptides/inhibitors	0	DIRECT
R3H domain	0	DIRECT
Cytidylyltransferase	0	DIRECT
HEAT repeat	0	DIRECT
Succinyl-CoA synthetase, beta-chain, N-terminal domain	0	DIRECT
Nuclear movement domain	0	DIRECT
RraA-like	0	DIRECT
Homocysteine S-methyltransferase	0	DIRECT
Flavin-binding PAS domain	0	DIRECT
B56-like	0	DIRECT
Ribosomal protein S27e	0	DIRECT
Ribosomal protein L10e	0	DIRECT
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	0	DIRECT
BAR domain	0	DIRECT
RibA-like	0	DIRECT
DNA polymerase processivity factor	0	DIRECT
Amylase, catalytic domain	0	DIRECT
Arginine methyltransferase	0	DIRECT
Cystatins	0	DIRECT
BolA-like	0	DIRECT
Ribosomal protein S15	0	DIRECT
LON domain-like	0	DIRECT
Rubredoxin	0	DIRECT
Transducin (alpha subunit), insertion domain	0	DIRECT
ATP sulfurylase N-terminal domain	0	DIRECT
Glutamine synthetase catalytic domain	0	DIRECT
MIF-related	0	DIRECT
Ran-binding domain	0	DIRECT
DNA repair protein MutS, domain I	0	DIRECT
Creatinase/aminopeptidase	0	DIRECT
Class-II DAHP synthetase	0	DIRECT
beta-N-acetylhexosaminidase catalytic domain	0	DIRECT
Peptidyl-tRNA hydrolase-like	0	DIRECT
Prokaryotic ribosomal protein L17	0	DIRECT
Smr domain	0	DIRECT
Eps15 homology domain (EH domain)	0	DIRECT
SerA intervening domain-like	0	DIRECT
Clc chloride channel	0	DIRECT
Ring hydroxylating alpha subunit ISP domain	0	DIRECT
Receiver domain of the ethylene receptor	0	DIRECT
Sigma2 domain of RNA polymerase sigma factors	0	DIRECT
Ribosomal protein L13	0	DIRECT
Casein kinase II beta subunit	0	DIRECT
Clp protease, ClpP subunit	0	DIRECT
Preprotein translocase SecE subunit	0	DIRECT
Choline kinase	0	DIRECT
Inosine monophosphate dehydrogenase (IMPDH)	0	DIRECT
RNB domain-like	0	DIRECT
Cu,Zn superoxide dismutase-like	0	DIRECT
5' nucleotidase-like	0	DIRECT
6-phosphogluconate dehydrogenase-like, N-terminal domain	0	DIRECT
Prokaryotic proteases	0	DIRECT
MYND zinc finger	0	DIRECT
Poly(A) polymerase, PAP, middle domain	0	DIRECT
Magnesium transport protein CorA, transmembrane region	0	DIRECT
Cell cycle transcription factor e2f-dp	0	DIRECT
Acyl-ACP thioesterase-like	0	DIRECT
Lactate & malate dehydrogenases, C-terminal domain	0	DIRECT
alpha-Amylases, C-terminal beta-sheet domain	0	DIRECT
Acyl-CoA binding protein	0	DIRECT
Oxidoreductase molybdopterin-binding domain	0	DIRECT
Ribosomal protein L14	0	DIRECT
P-domain of calnexin/calreticulin	0	DIRECT
Dihydrodipicolinate reductase-like	0	DIRECT
Lesion bypass DNA polymerase (Y-family), catalytic domain	0	DIRECT
Enolase	0	DIRECT
NadC N-terminal domain-like	0	DIRECT
RNase Z-like	0	DIRECT
Cyclin A/CDK2-associated p19, Skp2	0	DIRECT
Adenosine-5'phosphosulfate kinase (APS kinase)	0	DIRECT
RuBisCo LSMT C-terminal, substrate-binding domain	0	DIRECT
AMPK-beta glycogen binding domain-like	0	DIRECT
Tail specific protease, catalytic domain	0	DIRECT
Glyoxalase I (lactoylglutathione lyase)	0	DIRECT
Folylpolyglutamate synthetase	0	DIRECT
Sec63 C-terminal domain-like	0	DIRECT
RelA/SpoT domain	0	DIRECT
Glycolipid transfer protein, GLTP	0	DIRECT
GroES	0	DIRECT
Alpha subunit of glutamate synthase, C-terminal domain	0	DIRECT
Class I alpha-1;2-mannosidase, catalytic domain	0	DIRECT
Smc hinge domain	0	DIRECT
Succinyl-CoA synthetase domains	0	DIRECT
Cdc48 N-terminal domain-like	0	DIRECT
monodomain cytochrome c	0	DIRECT
Peptide methionine sulfoxide reductase	0	DIRECT
GroEL-like chaperone, intermediate domain	0	DIRECT
LEA14-like	0	DIRECT
Group II chaperonin (CCT, TRIC), ATPase domain	0	DIRECT
Staphylococcal nuclease	0	DIRECT
Cytochrome b5	0	DIRECT
Zn-finger domain of Sec23/24	0	DIRECT
Cytochrome p450 reductase N-terminal domain-like	0	DIRECT
N-type ATP pyrophosphatases	0	DIRECT
IPP isomerase-like	0	DIRECT
Prolyl oligopeptidase, C-terminal domain	0	DIRECT
beta-carbonic anhydrase, cab	0	DIRECT
Thiolase-related	0	DIRECT
TAZ domain	0	DIRECT
Shikimate kinase (AroK)	0	DIRECT
GlmU C-terminal domain-like	0	DIRECT
Signal peptide-binding domain	0	DIRECT
D-ribulose-5-phosphate 3-epimerase	0	DIRECT
Poly(A) polymerase, PAP, N-terminal domain	0	DIRECT
Eukaryotic type heme oxygenase	0	DIRECT
NadC C-terminal domain-like	0	DIRECT
2Fe-2S ferredoxin-related	0	DIRECT
Sedlin (SEDL)	0	DIRECT
Head domain of nucleotide exchange factor GrpE	0	DIRECT
PdxS-like	0	DIRECT
Ribosomal protein L3	0	DIRECT
Plant transcriptional regulator PBF-2	0	DIRECT
Ribosomal protein L10-like	0	DIRECT
Ribosomal protein L19 (L19e)	0	DIRECT
Poly(ADP-ribose) polymerase, C-terminal domain	0	DIRECT
Phosphofructokinase	0	DIRECT
NHL repeat	0	DIRECT
CAT-like	0	DIRECT
Anti-sigma factor antagonist SpoIIaa	0	DIRECT
Ribosomal protein L39e	0	DIRECT
Class I aldolase	0	DIRECT
Molybdenum-containing oxidoreductases-like dimerisation domain	0	DIRECT
Calnexin/calreticulin	0	DIRECT
1,3-glucuronyltransferase	0	DIRECT
UDP-glucose/GDP-mannose dehydrogenase dimerisation domain	0	DIRECT
WrbA-like	0	DIRECT
GDI-like N domain	0	DIRECT
GroEL chaperone, ATPase domain	0	DIRECT
Hypothetical protein At2g34160	0	DIRECT
Hypothetical protein YjiA, C-terminal domain	0	DIRECT
BphP N-terminal domain-like	0	DIRECT
eIF1-like	0	DIRECT
STAR domain	0	DIRECT
Biotinyl/lipoyl-carrier proteins and domains	0	DIRECT
PhzC/PhzF-like	0	DIRECT
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	0	DIRECT
Prokaryotic type I DNA topoisomerase	0	DIRECT
ATP sulfurylase catalytic domain	0	DIRECT
Cell cycle arrest protein BUB3	0	DIRECT
PUA domain	0	DIRECT
PCI domain (PINT motif)	0	DIRECT
UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	0	DIRECT
N-acetyl-l-glutamate kinase	0	DIRECT
HAL/PAL-like	0	DIRECT
Phytochrome-specific domain	0	DIRECT
Poly(A) polymerase, PAP, C-terminal domain	0	DIRECT
FAD/NAD-linked reductases, dimerisation (C-terminal) domain	0	DIRECT
Biotin dependent carboxylase carboxyltransferase domain	0	DIRECT
Ribosomal protein L37e	0	DIRECT
EDF1-like	0	DIRECT
SufE-like	0	DIRECT
Ribosomal protein S2	0	DIRECT
Glyoxalase II (hydroxyacylglutathione hydrolase)	0	DIRECT
TRM1-like	0	DIRECT
Pentapeptide repeats	0	DIRECT
Tetrapyrrole methylase	0	DIRECT
FKBP immunophilin/proline isomerase	0	DIRECT
XPC-binding domain	0	DIRECT
Phosphoglucomutase, first 3 domains	0	DIRECT
beta-sandwich domain of Sec23/24	0	DIRECT
Phosphoglycerate kinase	0	DIRECT
Helical domain of Sec23/24	0	DIRECT
Molybdenum cofactor biosynthesis protein MoeB	0	DIRECT
Ribosomal protein L31e	0	DIRECT
NADPH-cytochrome p450 reductase FAD-binding domain-like	0	DIRECT
Preprotein translocase SecY subunit	0	DIRECT
eIF5a N-terminal domain-like	0	DIRECT
Leukotriene A4 hydrolase catalytic domain	0	DIRECT
LDH N-terminal domain-like	0	DIRECT
Sec63 N-terminal domain	0	DIRECT
YicI N-terminal domain-like	0	DIRECT
Thioltransferase	0.0006008	DIRECT
Nitrogenase iron protein-like	0.004425	INHERITED FROM: cauline leaf
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain	0.005973	INHERITED FROM: rosette leaf
Glycosyl hydrolases family 35 catalytic domain	0.008115	INHERITED FROM: adult vascular leaf || rosette leaf || juvenile vascular leaf
Universal stress protein-like	0.01578	INHERITED FROM: cotyledon
Chalcone synthase-like	0.1015	INHERITED FROM: rosette leaf
GARP response regulators	0.1087	INHERITED FROM: leaf vascular system || juvenile vascular leaf
Trehalose-6-phosphate synthase, OtsA	0.1088	INHERITED FROM: rosette leaf
Glycosyl transferases group 1	0.1964	INHERITED FROM: cotyledon vascular system || leaf vascular system || rosette leaf
Amidase signature (AS) enzymes	0.1965	INHERITED FROM: rosette leaf
CheY-related	0.2604	INHERITED FROM: leaf vascular system || juvenile vascular leaf
NagZ-like	0.2883	INHERITED FROM: adult vascular leaf || juvenile vascular leaf
Beta-D-glucan exohydrolase, C-terminal domain	0.2883	INHERITED FROM: adult vascular leaf || juvenile vascular leaf
Homeodomain	0.339	INHERITED FROM: stipule
Glycosyl hydrolases family 32 N-terminal domain	0.4717	INHERITED FROM: adult vascular leaf
Carboxylesterase	0.5218	INHERITED FROM: adult vascular leaf
Canonical RBD	0.7638	INHERITED FROM: petiole
U-box	0.7993	INHERITED FROM: cotyledon vascular system
BTB/POZ domain	0.8508	INHERITED FROM: rosette leaf
MATH domain	1	INHERITED FROM: rosette leaf
Plant lipid-transfer and hydrophobic proteins	1	INHERITED FROM: cotyledon vascular system
Subtilases	1	INHERITED FROM: leaf vascular system
FtsH protease domain-like	1	INHERITED FROM: cauline leaf || cotyledon || petiole
Multidomain cupredoxins	1	INHERITED FROM: cotyledon vascular system || leaf vascular system || rosette leaf

Supra-domain (Single|Duplex|Triple)

Supra-domain (Single)

Highlighted in gray are those with FDR>0.001

Supra-domain (Single)	FDR (all)	Annotation (direct or inherited)
UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	0	DIRECT
DNA clamp	0	DIRECT
Cytochrome c	0	DIRECT
Acyl-CoA binding protein	0	DIRECT
Ribosomal protein L30p/L7e	0	DIRECT
Crambin-like	0	DIRECT
Ribosomal protein S2	0	DIRECT
PDZ domain-like	0	DIRECT
Lipocalins	0	DIRECT
Poly A polymerase C-terminal region-like	0	DIRECT
Serine metabolism enzymes domain	0	DIRECT
Lesion bypass DNA polymerase (Y-family), little finger domain	0	DIRECT
Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	0	DIRECT
GlnB-like	0	DIRECT
Heme oxygenase-like	0	DIRECT
PAP/Archaeal CCA-adding enzyme, C-terminal domain	0	DIRECT
Tetrahydrobiopterin biosynthesis enzymes-like	0	DIRECT
Hypothetical protein YjiA, C-terminal domain	0	DIRECT
Cu,Zn superoxide dismutase-like	0	DIRECT
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1	0	DIRECT
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	0	DIRECT
Phosphoglycerate kinase	0	DIRECT
RibA-like	0	DIRECT
SH3-domain	0	DIRECT
XPC-binding domain	0	DIRECT
Prokaryotic type I DNA topoisomerase	0	DIRECT
D-ribose-5-phosphate isomerase (RpiA), lid domain	0	DIRECT
Radical SAM enzymes	0	DIRECT
FAD/NAD-linked reductases, dimerisation (C-terminal) domain	0	DIRECT
alpha-helical ferredoxin	0	DIRECT
C-terminal, gelsolin-like domain of Sec23/24	0	DIRECT
Coiled-coil domain of nucleotide exchange factor GrpE	0	DIRECT
FKBP-like	0	DIRECT
Ribosomal protein L10-like	0	DIRECT
Preprotein translocase SecE subunit	0	DIRECT
Ribosomal L11/L12e N-terminal domain	0	DIRECT
beta-N-acetylhexosaminidase-like domain	0	DIRECT
TATA-box binding protein-like	0	DIRECT
S-adenosylmethionine synthetase	0	DIRECT
Succinyl-CoA synthetase domains	0	DIRECT
Ribosomal protein S6	0	DIRECT
ATP synthase (F1-ATPase), gamma subunit	0	DIRECT
Ribosomal protein L4	0	DIRECT
eIF1-like	0	DIRECT
tRNA-binding arm	0	DIRECT
Nitrite and sulphite reductase 4Fe-4S domain-like	0	DIRECT
Head domain of nucleotide exchange factor GrpE	0	DIRECT
Glycolipid transfer protein, GLTP	0	DIRECT
Inosine monophosphate dehydrogenase (IMPDH)	0	DIRECT
GroEL-intermediate domain like	0	DIRECT
Transducin (alpha subunit), insertion domain	0	DIRECT
Phosphoglucomutase, first 3 domains	0	DIRECT
Glutamine synthetase/guanido kinase	0	DIRECT
Tetrapyrrole methylase	0	DIRECT
Signal peptide-binding domain	0	DIRECT
RuBisCo LSMT C-terminal, substrate-binding domain	0	DIRECT
FAH	0	DIRECT
MurD-like peptide ligases, catalytic domain	0	DIRECT
ssDNA-binding transcriptional regulator domain	0	DIRECT
TAZ domain	0	DIRECT
Folate-binding domain	0	DIRECT
Ribosomal protein L16p/L10e	0	DIRECT
Heme-dependent catalase-like	0	DIRECT
Ribosomal protein L14	0	DIRECT
FAD-dependent thiol oxidase	0	DIRECT
CYTH-like phosphatases	0	DIRECT
Cryptochrome/photolyase FAD-binding domain	0	DIRECT
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	0	DIRECT
beta-carbonic anhydrase, cab	0	DIRECT
Glutamine synthetase, N-terminal domain	0	DIRECT
Pentapeptide repeat-like	0	DIRECT
R3H domain	0	DIRECT
AlbA-like	0	DIRECT
Sigma3 and sigma4 domains of RNA polymerase sigma factors	0	DIRECT
Diaminopimelate epimerase-like	0	DIRECT
DNA repair protein MutS, domain II	0	DIRECT
Homocysteine S-methyltransferase	0	DIRECT
Putative isomerase YbhE	0	DIRECT
Seven-hairpin glycosidases	0	DIRECT
LDH C-terminal domain-like	0	DIRECT
NSFL1 (p97 ATPase) cofactor p47, SEP domain	0	DIRECT
Ribosomal protein L31e	0	DIRECT
Zn-finger domain of Sec23/24	0	DIRECT
ADC-like	0	DIRECT
N-terminal domain of the delta subunit of the F1F0-ATP synthase	0	DIRECT
Cdc48 domain 2-like	0	DIRECT
Ribosomal proteins S24e, L23 and L15e	0	DIRECT
S13-like H2TH domain	0	DIRECT
6-phosphogluconate dehydrogenase C-terminal domain-like	0	DIRECT
SMR domain-like	0	DIRECT
RuBisCO, small subunit	0	DIRECT
GroEL equatorial domain-like	0	DIRECT
Staphylococcal nuclease	0	DIRECT
Nicotinate/Quinolinate PRTase C-terminal domain-like	0	DIRECT
E2F-DP heterodimerization region	0	DIRECT
P-domain of calnexin/calreticulin	0	DIRECT
Tautomerase/MIF	0	DIRECT
Single hybrid motif	0	DIRECT
RraA-like	0	DIRECT
GroEL apical domain-like	0	DIRECT
Expressed protein At2g23090/F21P24.15	0	DIRECT
Flavoproteins	0	DIRECT
Aconitase iron-sulfur domain	0	DIRECT
BolA-like	0	DIRECT
Magnesium transport protein CorA, transmembrane region	0	DIRECT
Ribosomal protein L29 (L29p)	0	DIRECT
LuxS/MPP-like metallohydrolase	0	DIRECT
Composite domain of metallo-dependent hydrolases	0	DIRECT
Chelatase	0	DIRECT
Metallo-dependent hydrolases	0	DIRECT
Creatinase/aminopeptidase	0	DIRECT
Chorismate mutase II	0	DIRECT
AMPKBI-like	0	DIRECT
Nicotinate/Quinolinate PRTase N-terminal domain-like	0	DIRECT
Electron transport accessory proteins	0	DIRECT
Phosphofructokinase	0	DIRECT
NHL repeat	0	DIRECT
Mitochondrial glycoprotein MAM33-like	0	DIRECT
Preprotein translocase SecY subunit	0	DIRECT
LysM domain	0	DIRECT
FF domain	0	DIRECT
Helical domain of Sec23/24	0	DIRECT
Ribosomal protein L19 (L19e)	0	DIRECT
Restriction endonuclease-like	0	DIRECT
Peptide methionine sulfoxide reductase	0	DIRECT
HesB-like domain	0	DIRECT
N-terminal, heterodimerisation domain of RBP7 (RpoE)	0	DIRECT
Creatinase/prolidase N-terminal domain	0	DIRECT
Alpha subunit of glutamate synthase, C-terminal domain	0	DIRECT
Globin-like	0	DIRECT
Leukotriene A4 hydrolase N-terminal domain	0	DIRECT
Dimeric alpha+beta barrel	0	DIRECT
Ribosomal protein L13	0	DIRECT
Sigma2 domain of RNA polymerase sigma factors	0	DIRECT
Clc chloride channel	0	DIRECT
Peptidyl-tRNA hydrolase-like	0	DIRECT
Casein kinase II beta subunit	0	DIRECT
Phosphoglucomutase, C-terminal domain	0	DIRECT
SIS domain	0	DIRECT
Ribosomal protein L39e	0	DIRECT
Ligand-binding domain in the NO signalling and Golgi transport	0	DIRECT
MurD-like peptide ligases, peptide-binding domain	0	DIRECT
DNA repair protein MutS, domain I	0	DIRECT
YrdC/RibB	0	DIRECT
Prokaryotic ribosomal protein L17	0	DIRECT
Oxidoreductase molybdopterin-binding domain	0	DIRECT
SH2 domain	0	DIRECT
LeuD/IlvD-like	0	DIRECT
Tim10-like	0	DIRECT
lambda repressor-like DNA-binding domains	0	DIRECT
Peptidase/esterase 'gauge' domain	0	DIRECT
Saposin	0	DIRECT
Lipoxigenase	0	DIRECT
ClpP/crotonase	0.0002882	DIRECT
Aldolase	0.0003107	DIRECT
Thioredoxin-like	0.0003926	DIRECT
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	0.001414	INHERITED FROM: rosette leaf
Glutathione synthetase ATP-binding domain-like	0.006697	INHERITED FROM: cauline leaf
Thiolase-like	0.007738	INHERITED FROM: cauline leaf || rosette leaf
beta-sandwich domain of Sec23/24	0.01387	INHERITED FROM: petiole || cotyledon
Cyclophilin-like	0.02154	INHERITED FROM: cauline leaf
CheY-like	0.04978	INHERITED FROM: leaf vascular system || juvenile vascular leaf
MCP/YpsA-like	0.0531	INHERITED FROM: rosette leaf
Amidase signature (AS) enzymes	0.1857	INHERITED FROM: rosette leaf
Beta-D-glucan exohydrolase, C-terminal domain	0.2682	INHERITED FROM: juvenile vascular leaf || adult vascular leaf
POZ domain	0.4906	INHERITED FROM: rosette leaf
(Trans)glycosidases	0.6212	INHERITED FROM: juvenile vascular leaf || adult vascular leaf
RNA-binding domain, RBD	0.6437	INHERITED FROM: petiole
Concanavalin A-like lectins/glucanases	0.7668	INHERITED FROM: adult vascular leaf
Bet v1-like	0.7824	INHERITED FROM: stipule
Galactose-binding domain-like	0.8741	INHERITED FROM: juvenile vascular leaf || adult vascular leaf || rosette leaf
Arabinanase/levansucrase/invertase	0.9199	INHERITED FROM: adult vascular leaf
FtsH protease domain-like	0.9947	INHERITED FROM: petiole || cotyledon || cauline leaf
Homeodomain-like	1	INHERITED FROM: leaf vascular system || juvenile vascular leaf || stipule
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	1	INHERITED FROM: cotyledon vascular system
Subtilisin-like	1	INHERITED FROM: leaf vascular system
TRAF domain-like	1	INHERITED FROM: rosette leaf
Cupredoxins	1	INHERITED FROM: leaf vascular system || cotyledon vascular system || rosette leaf

Supra-domain (Duplex) in N- to C-terminal order

Highlighted in gray are those with FDR>0.001

Supra-domain (Duplex) in N- to C-terminal order	FDR (all)	Annotation (direct or inherited)
51735,48179 51735 - NAD(P)-binding Rossmann-fold domains 48179 - 6-phosphogluconate dehydrogenase C-terminal domain-like	0	DIRECT
52540,48403 52540 - P-loop containing nucleoside triphosphate hydrolases 48403 - Ankyrin repeat	0	DIRECT
57850,57933 57850 - RING/U-box 57933 - TAZ domain	0	DIRECT
50249,57756 50249 - Nucleic acid-binding proteins 57756 - Retrovirus zinc finger-like domains	0	DIRECT
52833,52833 52833 - Thioredoxin-like 52833 - Thioredoxin-like	0	DIRECT
53738,53738 53738 - Phosphoglucomutase, first 3 domains 53738 - Phosphoglucomutase, first 3 domains	0	DIRECT
47005,52777 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 52777 - CoA-dependent acyltransferases	0	DIRECT
48403,52540 48403 - Ankyrin repeat 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
55821,142695 55821 - YrdC/RibB 142695 - RibA-like	0	DIRECT
53850,55021 53850 - Periplasmic binding protein-like II 55021 - ACT-like	0	DIRECT
54160,54160 54160 - Chromo domain-like 54160 - Chromo domain-like	0	DIRECT
55021,56112 55021 - ACT-like 56112 - Protein kinase-like (PK-like)	0	DIRECT
63737,55486 63737 - Leukotriene A4 hydrolase N-terminal domain 55486 - Metalloproteases ("zincins"), catalytic domain	0	DIRECT
55781,47384 55781 - GAF domain-like 47384 - Homodimeric domain of signal transducing histidine kinase	0	DIRECT
49899,63887 49899 - Concanavalin A-like lectins/glucanases 63887 - P-domain of calnexin/calreticulin	0	DIRECT
56235,53271 56235 - N-terminal nucleophile aminohydrolases (Ntn hydrolases) 53271 - PRTase-like	0	DIRECT
81901,48452 81901 - HCP-like 48452 - TPR-like	0	DIRECT
54909,54909 54909 - Dimeric alpha+beta barrel 54909 - Dimeric alpha+beta barrel	0	DIRECT
81631,55003 81631 - PAP/OAS1 substrate-binding domain 55003 - PAP/Archaeal CCA-adding enzyme, C-terminal domain	0	DIRECT
54368,55931 54368 - Glutamine synthetase, N-terminal domain 55931 - Glutamine synthetase/guanido kinase	0	DIRECT
55545,51445 55545 - beta-N-acetylhexosaminidase-like domain 51445 - (Trans)glycosidases	0	DIRECT
55781,55785 55781 - GAF domain-like 55785 - PYP-like sensor domain (PAS domain)	0	DIRECT
48179,52413 48179 - 6-phosphogluconate dehydrogenase C-terminal domain-like 52413 - UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	0	DIRECT
52172,52172 52172 - CheY-like 52172 - CheY-like	0	DIRECT
50729,55961 50729 - PH domain-like 55961 - Bet v1-like	0	DIRECT
52172,46689 52172 - CheY-like 46689 - Homeodomain-like	0	DIRECT
50249,55681 50249 - Nucleic acid-binding proteins 55681 - Class II aaRS and biotin synthetases	0	DIRECT
54695,48403 54695 - POZ domain 48403 - Ankyrin repeat	0	DIRECT
55920,46785 55920 - Creatinase/aminopeptidase 46785 - "Winged helix" DNA-binding domain	0	DIRECT
158702,81296 158702 - Sec63 N-terminal domain-like 81296 - E set domains	0	DIRECT
81995,82919 81995 - beta-sandwich domain of Sec23/24 82919 - Zn-finger domain of Sec23/24	0	DIRECT
81811,82754 81811 - Helical domain of Sec23/24 82754 - C-terminal, gelsolin-like domain of Sec23/24	0	DIRECT
49723,48484 49723 - Lipase/lipooxygenase domain (PLAT/LH2 domain) 48484 - Lipoxigenase	0	DIRECT
50022,55961 50022 - ISP domain 55961 - Bet v1-like	0	DIRECT
46785,54928 46785 - "Winged helix" DNA-binding domain 54928 - RNA-binding domain, RBD	0	DIRECT
88946,88659 88946 - Sigma2 domain of RNA polymerase sigma factors 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors	0	DIRECT
54534,48452 54534 - FKBP-like 48452 - TPR-like	0	DIRECT
54980,54980 54980 - EF-G C-terminal domain-like 54980 - EF-G C-terminal domain-like	0	DIRECT
47661,58038 47661 - t-snare proteins 58038 - SNARE fusion complex	0	DIRECT
54747,46906 54747 - Ribosomal L11/L12e N-terminal domain 46906 - Ribosomal protein L11, C-terminal domain	0	DIRECT
102848,54236 102848 - NSFL1 (p97 ATPase) cofactor p47, SEP domain 54236 - Ubiquitin-like	0	DIRECT
46785,158702 46785 - "Winged helix" DNA-binding domain 158702 - Sec63 N-terminal domain-like	0	DIRECT
50729,57863 50729 - PH domain-like 57863 - ArfGap/RecO-like zinc finger	0	DIRECT
56219,56219 56219 - DNase I-like 56219 - DNase I-like	0	DIRECT
57850,54928 57850 - RING/U-box 54928 - RNA-binding domain, RBD	0	DIRECT
47592,159042 47592 - SWIB/MDM2 domain 159042 - Plus3-like	0	DIRECT
100950,75445 100950 - NagB/RpiA/CoA transferase-like 75445 - D-ribose-5-phosphate isomerase (RpiA), lid domain	0	DIRECT
54534,54534 54534 - FKBP-like 54534 - FKBP-like	0	DIRECT
53383,53383 53383 - PLP-dependent transferases 53383 - PLP-dependent transferases	0	DIRECT
52743,52025 52743 - Subtilisin-like 52025 - PA domain	0	DIRECT
88798,50249 88798 - N-terminal, heterodimerisation domain of RBP7 (RpoE) 50249 - Nucleic acid-binding proteins	0	DIRECT
81383,54518 81383 - F-box domain 54518 - Tubby C-terminal domain-like	0	DIRECT
48403,57850 48403 - Ankyrin repeat 57850 - RING/U-box	0	DIRECT
51735,56327 51735 - NAD(P)-binding Rossmann-fold domains 56327 - LDH C-terminal domain-like	0	DIRECT
82919,53300 82919 - Zn-finger domain of Sec23/24 53300 - vWA-like	0	DIRECT
51338,51556 51338 - Composite domain of metallo-dependent hydrolases 51556 - Metallo-dependent hydrolases	0	DIRECT
63411,63411 63411 - LuxS/MPP-like metallohydrolase 63411 - LuxS/MPP-like metallohydrolase	0	DIRECT
52540,48340 52540 - P-loop containing nucleoside triphosphate hydrolases 48340 - Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	0	DIRECT
57938,49493 57938 - DnaJ/Hsp40 cysteine-rich domain 49493 - HSP40/DnaJ peptide-binding domain	0	DIRECT
103657,50729 103657 - BAR/IMD domain-like 50729 - PH domain-like	0	DIRECT
54160,52540 54160 - Chromo domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
88659,88659 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors	0	DIRECT
51230,47005 51230 - Single hybrid motif 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	0	DIRECT
52540,47446 52540 - P-loop containing nucleoside triphosphate hydrolases 47446 - Signal peptide-binding domain	0	DIRECT
46689,51905 46689 - Homeodomain-like 51905 - FAD/NAD(P)-binding domain	0	DIRECT
51905,55424 51905 - FAD/NAD(P)-binding domain 55424 - FAD/NAD-linked reductases, dimerisation (C-terminal) domain	0	DIRECT
46689,46785 46689 - Homeodomain-like 46785 - "Winged helix" DNA-binding domain	0	DIRECT
50104,50249 50104 - Translation proteins SH3-like domain 50249 - Nucleic acid-binding proteins	0	DIRECT
48592,54849 48592 - GroEL equatorial domain-like 54849 - GroEL-intermediate domain like	0	DIRECT
88697,52374 88697 - PUA domain-like 52374 - Nucleotidylyl transferase	0	DIRECT
55781,55781 55781 - GAF domain-like 55781 - GAF domain-like	0	DIRECT
52540,52058 52540 - P-loop containing nucleoside triphosphate hydrolases 52058 - L domain-like	0	DIRECT
47473,51695 47473 - EF-hand 51695 - PLC-like phosphodiesterases	0	DIRECT
50993,53474 50993 - Peptidase/esterase 'gauge' domain 53474 - alpha/beta-Hydrolases	0	DIRECT
101908,56219 101908 - Putative isomerase YbhE 56219 - DNase I-like	0	DIRECT
101238,46934 101238 - XPC-binding domain 46934 - UBA-like	0	DIRECT
55785,81383 55785 - PYP-like sensor domain (PAS domain) 81383 - F-box domain	0	DIRECT
109604,81301 109604 - HD-domain/PDEase-like 81301 - Nucleotidyltransferase	0	DIRECT
50692,54585 50692 - ADC-like 54585 - Cdc48 domain 2-like	0	DIRECT
49599,54695 49599 - TRAF domain-like 54695 - POZ domain	0	DIRECT
55785,55785 55785 - PYP-like sensor domain (PAS domain) 55785 - PYP-like sensor domain (PAS domain)	0	DIRECT
54849,52029 54849 - GroEL-intermediate domain like 52029 - GroEL apical domain-like	0	DIRECT
53300,81995 53300 - vWA-like 81995 - beta-sandwich domain of Sec23/24	0	DIRECT
50249,52540 50249 - Nucleic acid-binding proteins 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
82199,81822 82199 - SET domain 81822 - RuBisCo LSMT C-terminal, substrate-binding domain	0	DIRECT
51045,51045 51045 - WW domain 51045 - WW domain	0	DIRECT
57850,46689 57850 - RING/U-box 46689 - Homeodomain-like	0	DIRECT
143548,55021 143548 - Serine metabolism enzymes domain 55021 - ACT-like	0	DIRECT
47473,103506 47473 - EF-hand 103506 - Mitochondrial carrier	0	DIRECT
52540,52317 52540 - P-loop containing nucleoside triphosphate hydrolases 52317 - Class I glutamine amidotransferase-like	0	DIRECT
53738,55957 53738 - Phosphoglucomutase, first 3 domains 55957 - Phosphoglucomutase, C-terminal domain	0	DIRECT
56672,100879 56672 - DNA/RNA polymerases 100879 - Lesion bypass DNA polymerase (Y-family), little finger domain	0	DIRECT
50494,50156 50494 - Trypsin-like serine proteases 50156 - PDZ domain-like	0	DIRECT
81995,81811 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24	0	DIRECT
81301,81891 81301 - Nucleotidyltransferase 81891 - Poly A polymerase C-terminal region-like	0	DIRECT
53732,52016 53732 - Aconitase iron-sulfur domain 52016 - LeuD/IlvD-like	0	DIRECT
101690,69065 101690 - PAZ domain 69065 - RNase III domain-like	0	DIRECT
56059,52210 56059 - Glutathione synthetase ATP-binding domain-like 52210 - Succinyl-CoA synthetase domains	0	DIRECT
46785,144074 46785 - "Winged helix" DNA-binding domain 144074 - E2F-DP heterodimerization region	0	DIRECT
50630,47862 50630 - Acid proteases 47862 - Saposin	0	DIRECT
52402,52833 52402 - Adenine nucleotide alpha hydrolases-like 52833 - Thioredoxin-like	0	DIRECT
54695,48452 54695 - POZ domain 48452 - TPR-like	0	DIRECT
53448,51161 53448 - Nucleotide-diphospho-sugar transferases 51161 - Trimeric LpxA-like enzymes	0	DIRECT
52025,57850 52025 - PA domain 57850 - RING/U-box	0	DIRECT
81296,51445 81296 - E set domains 51445 - (Trans)glycosidases	0	DIRECT
55973,55973 55973 - S-adenosylmethionine synthetase 55973 - S-adenosylmethionine synthetase	0	DIRECT
52425,48173 52425 - Cryptochrome/photolyase, N-terminal domain 48173 - Cryptochrome/photolyase FAD-binding domain	0	DIRECT
53300,57850 53300 - vWA-like 57850 - RING/U-box	0	DIRECT
81698,81698 81698 - FF domain 81698 - FF domain	0	DIRECT
117916,117916 117916 - Fe-S cluster assembly (FSCA) domain-like 117916 - Fe-S cluster assembly (FSCA) domain-like	0	DIRECT
64356,49447 64356 - SNARE-like 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	0	DIRECT
158639,63748 158639 - ENT-like 63748 - Tudor/PWWP/MBT	0	DIRECT
56112,48371 56112 - Protein kinase-like (PK-like) 48371 - ARM repeat	0	DIRECT
46565,57938 46565 - Chaperone J-domain 57938 - DnaJ/Hsp40 cysteine-rich domain	0	DIRECT
82171,53474 82171 - DPP6 N-terminal domain-like 53474 - alpha/beta-Hydrolases	0	DIRECT
81296,52540 81296 - E set domains 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
52540,90002 52540 - P-loop containing nucleoside triphosphate hydrolases 90002 - Hypothetical protein YjiA, C-terminal domain	0	DIRECT
55785,55781 55785 - PYP-like sensor domain (PAS domain) 55781 - GAF domain-like	0	DIRECT
55874,52172 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 52172 - CheY-like	0	DIRECT
51735,143548 51735 - NAD(P)-binding Rossmann-fold domains 143548 - Serine metabolism enzymes domain	0	DIRECT
50156,52096 50156 - PDZ domain-like 52096 - ClpP/crotonase	0	DIRECT
54171,101936 54171 - DNA-binding domain 101936 - DNA-binding pseudobarrel domain	0	DIRECT
57863,48403 57863 - ArfGap/RecO-like zinc finger 48403 - Ankyrin repeat	0	DIRECT
56524,81296 56524 - Oxidoreductase molybdopterin-binding domain 81296 - E set domains	0	DIRECT
55481,53137 55481 - N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 53137 - Translational machinery components	0	DIRECT
58014,51064 58014 - Coiled-coil domain of nucleotide exchange factor GrpE 51064 - Head domain of nucleotide exchange factor GrpE	0	DIRECT
47895,52540 47895 - Transducin (alpha subunit), insertion domain 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
158702,52540 158702 - Sec63 N-terminal domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
54585,52540 54585 - Cdc48 domain 2-like 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
51735,55347 51735 - NAD(P)-binding Rossmann-fold domains 55347 - Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	0.001414	INHERITED FROM: rosette leaf
49785,49785 49785 - Galactose-binding domain-like 49785 - Galactose-binding domain-like	0.003526	INHERITED FROM: juvenile vascular leaf || adult vascular leaf || rosette leaf
51445,49785 51445 - (Trans)glycosidases 49785 - Galactose-binding domain-like	0.007015	INHERITED FROM: juvenile vascular leaf || adult vascular leaf || rosette leaf
53901,53901 53901 - Thiolase-like 53901 - Thiolase-like	0.01675	INHERITED FROM: cauline leaf || rosette leaf
53756,56784 53756 - UDP-Glycosyltransferase/glycogen phosphorylase 56784 - HAD-like	0.0531	INHERITED FROM: rosette leaf
51445,52279 51445 - (Trans)glycosidases 52279 - Beta-D-glucan exohydrolase, C-terminal domain	0.2682	INHERITED FROM: juvenile vascular leaf || adult vascular leaf
57850,48371 57850 - RING/U-box 48371 - ARM repeat	0.3542	INHERITED FROM: cotyledon vascular system
75005,49899 75005 - Arabinanase/levansucrase/invertase 49899 - Concanavalin A-like lectins/glucanases	0.4514	INHERITED FROM: adult vascular leaf
55961,55961 55961 - Bet v1-like 55961 - Bet v1-like	1	INHERITED FROM: stipule
52540,140990 52540 - P-loop containing nucleoside triphosphate hydrolases 140990 - FtsH protease domain-like	1	INHERITED FROM: petiole || cotyledon || cauline leaf
49503,49503 49503 - Cupredoxins 49503 - Cupredoxins	1	INHERITED FROM: leaf vascular system || cotyledon vascular system || rosette leaf

Supra-domain (Triple) in N- to C-terminal order

Highlighted in gray are those with FDR>0.001

Supra-domain (Triple) in N- to C-terminal order	FDR (all)	Annotation (direct or inherited)
46785,158702,52540 46785 - "Winged helix" DNA-binding domain 158702 - Sec63 N-terminal domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
57903,57903,55729 57903 - FYVE/PHD zinc finger 57903 - FYVE/PHD zinc finger 55729 - Acyl-CoA N-acyltransferases (Nat)	0	DIRECT
81995,82919,53300 81995 - beta-sandwich domain of Sec23/24 82919 - Zn-finger domain of Sec23/24 53300 - vWA-like	0	DIRECT
50447,54980,54980 50447 - Translation proteins 54980 - EF-G C-terminal domain-like 54980 - EF-G C-terminal domain-like	0	DIRECT
57938,49493,49493 57938 - DnaJ/Hsp40 cysteine-rich domain 49493 - HSP40/DnaJ peptide-binding domain 49493 - HSP40/DnaJ peptide-binding domain	0	DIRECT
158702,52540,52540 158702 - Sec63 N-terminal domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
51735,143548,55021 51735 - NAD(P)-binding Rossmann-fold domains 143548 - Serine metabolism enzymes domain 55021 - ACT-like	0	DIRECT
88946,88659,88659 88946 - Sigma2 domain of RNA polymerase sigma factors 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors 88659 - Sigma3 and sigma4 domains of RNA polymerase sigma factors	0	DIRECT
50729,57863,48403 50729 - PH domain-like 57863 - ArfGap/RecO-like zinc finger 48403 - Ankyrin repeat	0	DIRECT
81698,81698,81698 81698 - FF domain 81698 - FF domain 81698 - FF domain	0	DIRECT
63411,63411,63411 63411 - LuxS/MPP-like metallohydrolase 63411 - LuxS/MPP-like metallohydrolase 63411 - LuxS/MPP-like metallohydrolase	0	DIRECT
81296,51445,51011 81296 - E set domains 51445 - (Trans)glycosidases 51011 - Glycosyl hydrolase domain	0	DIRECT
46689,51905,54373 46689 - Homeodomain-like 51905 - FAD/NAD(P)-binding domain 54373 - FAD-linked reductases, C-terminal domain	0	DIRECT
81296,52540,48403 81296 - E set domains 52540 - P-loop containing nucleoside triphosphate hydrolases 48403 - Ankyrin repeat	0	DIRECT
51735,48179,52413 51735 - NAD(P)-binding Rossmann-fold domains 48179 - 6-phosphogluconate dehydrogenase C-terminal domain-like 52413 - UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	0	DIRECT
55481,53137,55315 55481 - N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 53137 - Translational machinery components 55315 - L30e-like	0	DIRECT
55781,47384,55874 55781 - GAF domain-like 47384 - Homodimeric domain of signal transducing histidine kinase 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	0	DIRECT
55785,55781,55781 55785 - PYP-like sensor domain (PAS domain) 55781 - GAF domain-like 55781 - GAF domain-like	0	DIRECT
52283,51735,143548 52283 - Formate/glycerate dehydrogenase catalytic domain-like 51735 - NAD(P)-binding Rossmann-fold domains 143548 - Serine metabolism enzymes domain	0	DIRECT
55781,55785,55785 55781 - GAF domain-like 55785 - PYP-like sensor domain (PAS domain) 55785 - PYP-like sensor domain (PAS domain)	0	DIRECT
57850,57850,57933 57850 - RING/U-box 57850 - RING/U-box 57933 - TAZ domain	0	DIRECT
52540,46785,158702 52540 - P-loop containing nucleoside triphosphate hydrolases 46785 - "Winged helix" DNA-binding domain 158702 - Sec63 N-terminal domain-like	0	DIRECT
82919,53300,81995 82919 - Zn-finger domain of Sec23/24 53300 - vWA-like 81995 - beta-sandwich domain of Sec23/24	0	DIRECT
53300,81995,81811 53300 - vWA-like 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24	0	DIRECT
48592,54849,52029 48592 - GroEL equatorial domain-like 54849 - GroEL-intermediate domain like 52029 - GroEL apical domain-like	0	DIRECT
52833,52833,52833 52833 - Thioredoxin-like 52833 - Thioredoxin-like 52833 - Thioredoxin-like	0	DIRECT
47384,55874,52172 47384 - Homodimeric domain of signal transducing histidine kinase 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 52172 - CheY-like	0	DIRECT
54534,54534,54534 54534 - FKBP-like 54534 - FKBP-like 54534 - FKBP-like	0	DIRECT
54160,54160,52540 54160 - Chromo domain-like 54160 - Chromo domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
54534,54534,48452 54534 - FKBP-like 54534 - FKBP-like 48452 - TPR-like	0	DIRECT
55785,81383,117281 55785 - PYP-like sensor domain (PAS domain) 81383 - F-box domain 117281 - Kelch motif	0	DIRECT
53738,53738,55957 53738 - Phosphoglucomutase, first 3 domains 53738 - Phosphoglucomutase, first 3 domains 55957 - Phosphoglucomutase, C-terminal domain	0	DIRECT
46565,57938,49493 46565 - Chaperone J-domain 57938 - DnaJ/Hsp40 cysteine-rich domain 49493 - HSP40/DnaJ peptide-binding domain	0	DIRECT
54160,52540,52540 54160 - Chromo domain-like 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
50692,54585,52540 50692 - ADC-like 54585 - Cdc48 domain 2-like 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
51230,47005,52777 51230 - Single hybrid motif 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 52777 - CoA-dependent acyltransferases	0	DIRECT
54585,52540,52540 54585 - Cdc48 domain 2-like 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases	0	DIRECT
81301,81631,55003 81301 - Nucleotidyltransferase 81631 - PAP/OAS1 substrate-binding domain 55003 - PAP/Archaeal CCA-adding enzyme, C-terminal domain	0	DIRECT
90229,90229,90229 90229 - CCCH zinc finger 90229 - CCCH zinc finger 90229 - CCCH zinc finger	0	DIRECT
49785,49785,51445 49785 - Galactose-binding domain-like 49785 - Galactose-binding domain-like 51445 - (Trans)glycosidases	0	DIRECT
55973,55973,55973 55973 - S-adenosylmethionine synthetase 55973 - S-adenosylmethionine synthetase 55973 - S-adenosylmethionine synthetase	0	DIRECT
81995,81811,82754 81995 - beta-sandwich domain of Sec23/24 81811 - Helical domain of Sec23/24 82754 - C-terminal, gelsolin-like domain of Sec23/24	0	DIRECT
55781,55781,55785 55781 - GAF domain-like 55781 - GAF domain-like 55785 - PYP-like sensor domain (PAS domain)	0	DIRECT
81383,117281,117281 81383 - F-box domain 117281 - Kelch motif 117281 - Kelch motif	0	DIRECT
46785,158702,81296 46785 - "Winged helix" DNA-binding domain 158702 - Sec63 N-terminal domain-like 81296 - E set domains	0	DIRECT
47473,51695,49562 47473 - EF-hand 51695 - PLC-like phosphodiesterases 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)	0	DIRECT
47364,52540,47446 47364 - Domain of the SRP/SRP receptor G-proteins 52540 - P-loop containing nucleoside triphosphate hydrolases 47446 - Signal peptide-binding domain	0	DIRECT
103657,50729,57863 103657 - BAR/IMD domain-like 50729 - PH domain-like 57863 - ArfGap/RecO-like zinc finger	0	DIRECT
54695,48452,48452 54695 - POZ domain 48452 - TPR-like 48452 - TPR-like	0	DIRECT
52540,52540,46785 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases 46785 - "Winged helix" DNA-binding domain	0	DIRECT
53738,53738,53738 53738 - Phosphoglucomutase, first 3 domains 53738 - Phosphoglucomutase, first 3 domains 53738 - Phosphoglucomutase, first 3 domains	0	DIRECT
50249,57756,57756 50249 - Nucleic acid-binding proteins 57756 - Retrovirus zinc finger-like domains 57756 - Retrovirus zinc finger-like domains	0	DIRECT
51445,49785,49785 51445 - (Trans)glycosidases 49785 - Galactose-binding domain-like 49785 - Galactose-binding domain-like	0.009875	INHERITED FROM: juvenile vascular leaf || adult vascular leaf || rosette leaf