|
Transferring one-carbon groups
(show info)
Enzyme Commission (EC)
Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed. To navigate hierarchical structure of EC, we display all parental EC terms to the current EC term of interest ordered by their shortest distances to the current term. Also, only direct children EC terms of the current EC term are listed.
Structural Classification of Proteins (SCOP)
SCOP classifies evolutionary-related domains into Superfamily level and Family level. Accordingly, we have generated the domain-centric EC annotations for each of the three concepts at each of the two domain levels.
Structural Domain Enzyme Commission Ontology (SDEO)
As domain-centric ontology, SDEO only refers to those EC terms which are the most informative to annotate SCOP domains.
EC annotations for SCOP domains
For details, please visit Documentation: EC annotations for SCOP domains. Therein, we provide several relevant files ( Data Availability) for the download, including an annotation file (i.e., Domain2EC.txt) and the corresponding ontology (i.e., SDEO.txt).
Supra-domain Enzyme Commission Ontology (SPEO)
As an extension, SPEO includes those EC terms which are the most informative to annotate supra-domains and individual SCOP domains at the Superfamily level.
EC annotations for Supra-domains
For details, please visit Documentation: EC annotations for Supra-domains. Therein, we provide several relevant files ( Data Availability) for the download, including a annotation file (i.e., SP2EC.txt) and an ontology (i.e., SPEO.txt). For the sake of being browsable, listed below are those supra-domains (single, dual, triple, quad).
Jump to [ Top · EC Hierarchy · Superfamily · Family · Supra-domain ]
Root: EC Hierarchy (from IntEnz release 70)
Jump to [ Top · EC Hierarchy · Superfamily · Family · Supra-domain ]
Superfamily(show details)
Superfamily domains annotated to this EC term (SDEO level: Least Informative)
Highlighted in gray are those with FDR_all>0.001
SCOP term |
FDR (all) |
Annotation (direct or inherited) |
L30e-like | 0 | DIRECT |
Aminomethyltransferase beta-barrel domain | 0 | DIRECT |
Methylated DNA-protein cysteine methyltransferase, C-terminal domain | 0 | DIRECT |
Methionine synthase domain | 0 | DIRECT |
Methylated DNA-protein cysteine methyltransferase domain | 0 | DIRECT |
Flavivirus capsid protein C | 0 | DIRECT |
S-adenosyl-L-methionine-dependent methyltransferases | 0 | DIRECT |
Tetrapyrrole methylase | 0 | DIRECT |
Chemotaxis receptor methyltransferase CheR, N-terminal domain | 0 | DIRECT |
Methionine synthase activation domain-like | 0 | DIRECT |
Putative methyltransferase TM0872, insert domain | 0 | DIRECT |
Viral glycoprotein, central and dimerisation domains | 0 | DIRECT |
Phosphoenolpyruvate/pyruvate domain | 0 | DIRECT |
Cytidine deaminase-like | 0 | DIRECT |
FMT C-terminal domain-like | 0 | DIRECT |
UROD/MetE-like | 0 | DIRECT |
Methylglyoxal synthase-like | 0 | DIRECT |
Formyltransferase | 0 | DIRECT |
Folate-binding domain | 0 | DIRECT |
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0 | DIRECT |
Formiminotransferase domain of formiminotransferase-cyclodeaminase. | 0 | DIRECT |
Thymidylate synthase-complementing protein Thy1 | 0 | DIRECT |
SET domain | 0 | DIRECT |
Thymidylate synthase/dCMP hydroxymethylase | 0 | DIRECT |
Homocysteine S-methyltransferase | 0 | DIRECT |
FAD/NAD(P)-binding domain | 0 | DIRECT |
Siroheme synthase middle domains-like | 0 | DIRECT |
NusB-like | 0 | DIRECT |
Radical SAM enzymes | 0 | DIRECT |
Aspartate/ornithine carbamoyltransferase | 0 | DIRECT |
alpha/beta knot | 0 | DIRECT |
RuBisCo LSMT C-terminal, substrate-binding domain | 0 | DIRECT |
WW domain | 0.0000000000014 | DIRECT |
RNA-binding domain, RBD | 0.00000000004189 | DIRECT |
Cobalamin (vitamin B12)-binding domain | 0.0000000002219 | DIRECT |
DNA-binding domain | 0.0000000003701 | DIRECT |
Tudor/PWWP/MBT | 0.000000000478 | DIRECT |
FYVE/PHD zinc finger | 0.0000000006577 | DIRECT |
HMG-box | 0.00000002056 | DIRECT |
Methenyltetrahydrofolate cyclohydrolase-like | 0.00000002056 | DIRECT |
PLP-dependent transferases | 0.00000002923 | DIRECT |
beta-beta-alpha zinc fingers | 0.0001316 | DIRECT |
Dihydrofolate reductase-like | 0.0001523 | DIRECT |
Chromo domain-like | 0.0007915 | DIRECT |
Dihydropteroate synthetase-like | 0.001444 | INHERITED FROM: Methyltransferases || Methionine synthase || Tetrahydromethanopterin S-methyltransferase |
Nucleotide-binding domain | 0.00166 | INHERITED FROM: Methyltransferases || tRNA (5-methylaminomethyl-2-thiouridylate)-methylt |
FAD-linked reductases, C-terminal domain | 0.01911 | INHERITED FROM: Methyltransferases || tRNA (5-methylaminomethyl-2-thiouridylate)-methylt |
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain | 0.1114 | INHERITED FROM: Methyltransferases || Histone-lysine N-methyltransferase |
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.2277 | INHERITED FROM: tRNA (guanine(37)-N(1))-methyltransferase |
TPR-like | 0.5544 | INHERITED FROM: Histone-lysine N-methyltransferase |
Bromodomain | 0.7336 | INHERITED FROM: Histone-lysine N-methyltransferase |
Rudiment single hybrid motif | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
E set domains | 1 | INHERITED FROM: mRNA (nucleoside-2'-O-)-methyltransferase || mRNA (guanine-N(7)-)-methyltransferase |
DNA/RNA polymerases | 1 | INHERITED FROM: mRNA (nucleoside-2'-O-)-methyltransferase || mRNA (guanine-N(7)-)-methyltransferase |
PurM N-terminal domain-like | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
P-loop containing nucleoside triphosphate hydrolases | 1 | INHERITED FROM: mRNA (nucleoside-2'-O-)-methyltransferase || mRNA (guanine-N(7)-)-methyltransferase |
Glutathione synthetase ATP-binding domain-like | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
"Winged helix" DNA-binding domain | 1 | INHERITED FROM: Acetylserotonin O-methyltransferase || Caffeate O-methyltransferase |
PUA domain-like | 1 | INHERITED FROM: Methyltransferases || Histone-lysine N-methyltransferase || 23S rRNA (cytosine(1962)-C(5))-methyltransferase || 16S rRNA (uracil(1498)-N(3))-methyltransferase |
PurM C-terminal domain-like | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
Clavaminate synthase-like | 1 | INHERITED FROM: tRNA (carboxymethyluridine(34)-5-O)-methyltransfer |
alpha/beta-Hydrolases | 1 | INHERITED FROM: Malonyl-CoA O-methyltransferase |
Nucleic acid-binding proteins | 1 | INHERITED FROM: 23S rRNA (uracil(1939)-C(5))-methyltransferase |
NAD(P)-binding Rossmann-fold domains | 1 | INHERITED FROM: Uroporphyrinogen-III C-methyltransferase || UDP-4-amino-4-deoxy-L-arabinose formyltransferase |
Carbamoyl phosphate synthetase, large subunit connection domain | 1 | INHERITED FROM: Carboxyl- and carbamoyltransferases || Aspartate carbamoyltransferase |
Pentein | 1 | INHERITED FROM: Amidinotransferases |
PreATP-grasp domain | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
Carbamoyl phosphate synthetase, small subunit N-terminal domain | 1 | INHERITED FROM: Carboxyl- and carbamoyltransferases || Aspartate carbamoyltransferase |
Trypsin-like serine proteases | 1 | INHERITED FROM: mRNA (nucleoside-2'-O-)-methyltransferase || mRNA (guanine-N(7)-)-methyltransferase |
SCOP term |
FDR (all) |
Annotation (direct or inherited) |
L30e-like | 0 | Direct |
Aminomethyltransferase beta-barrel domain | 0 | Direct |
Methylated DNA-protein cysteine methyltransferase, C-terminal domain | 0 | Direct |
Methionine synthase domain | 0 | Direct |
Methylated DNA-protein cysteine methyltransferase domain | 0 | Direct |
Flavivirus capsid protein C | 0 | Direct |
S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
Tetrapyrrole methylase | 0 | Direct |
Chemotaxis receptor methyltransferase CheR, N-terminal domain | 0 | Direct |
Methionine synthase activation domain-like | 0 | Direct |
Putative methyltransferase TM0872, insert domain | 0 | Direct |
Viral glycoprotein, central and dimerisation domains | 0 | Direct |
Phosphoenolpyruvate/pyruvate domain | 0 | Direct |
Cytidine deaminase-like | 0 | Direct |
FMT C-terminal domain-like | 0 | Direct |
UROD/MetE-like | 0 | Direct |
Methylglyoxal synthase-like | 0 | Direct |
Formyltransferase | 0 | Direct |
Folate-binding domain | 0 | Direct |
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0 | Direct |
Formiminotransferase domain of formiminotransferase-cyclodeaminase. | 0 | Direct |
Thymidylate synthase-complementing protein Thy1 | 0 | Direct |
SET domain | 0 | Direct |
Thymidylate synthase/dCMP hydroxymethylase | 0 | Direct |
Homocysteine S-methyltransferase | 0 | Direct |
FAD/NAD(P)-binding domain | 0 | Direct |
Siroheme synthase middle domains-like | 0 | Direct |
NusB-like | 0 | Direct |
Radical SAM enzymes | 0 | Direct |
Aspartate/ornithine carbamoyltransferase | 0 | Direct |
alpha/beta knot | 0 | Direct |
RuBisCo LSMT C-terminal, substrate-binding domain | 0 | Direct |
WW domain | 0.0000000000014 | Direct |
RNA-binding domain, RBD | 0.00000000004189 | Direct |
Cobalamin (vitamin B12)-binding domain | 0.0000000002219 | Direct |
DNA-binding domain | 0.0000000003701 | Direct |
Tudor/PWWP/MBT | 0.000000000478 | Direct |
FYVE/PHD zinc finger | 0.0000000006577 | Direct |
HMG-box | 0.00000002056 | Direct |
Methenyltetrahydrofolate cyclohydrolase-like | 0.00000002056 | Direct |
PLP-dependent transferases | 0.00000002923 | Direct |
beta-beta-alpha zinc fingers | 0.0001316 | Direct |
Dihydrofolate reductase-like | 0.0001523 | Direct |
Chromo domain-like | 0.0007915 | Direct |
Dihydropteroate synthetase-like | 0.001444 | Inherited |
Nucleotide-binding domain | 0.00166 | Inherited |
FAD-linked reductases, C-terminal domain | 0.01911 | Inherited |
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain | 0.1114 | Inherited |
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.2277 | Inherited |
TPR-like | 0.5544 | Inherited |
Bromodomain | 0.7336 | Inherited |
Rudiment single hybrid motif | 1 | Inherited |
E set domains | 1 | Inherited |
DNA/RNA polymerases | 1 | Inherited |
PurM N-terminal domain-like | 1 | Inherited |
P-loop containing nucleoside triphosphate hydrolases | 1 | Inherited |
Glutathione synthetase ATP-binding domain-like | 1 | Inherited |
"Winged helix" DNA-binding domain | 1 | Inherited |
PUA domain-like | 1 | Inherited |
PurM C-terminal domain-like | 1 | Inherited |
Clavaminate synthase-like | 1 | Inherited |
alpha/beta-Hydrolases | 1 | Inherited |
Nucleic acid-binding proteins | 1 | Inherited |
NAD(P)-binding Rossmann-fold domains | 1 | Inherited |
Carbamoyl phosphate synthetase, large subunit connection domain | 1 | Inherited |
Pentein | 1 | Inherited |
PreATP-grasp domain | 1 | Inherited |
Carbamoyl phosphate synthetase, small subunit N-terminal domain | 1 | Inherited |
Trypsin-like serine proteases | 1 | Inherited |
Jump to [ Top · EC Hierarchy · Superfamily · Family · Supra-domain ]
Family(show details)
Family domains annotated to this (SDEO level: Least Informative)
Highlighted in gray are those with FDR_all>0.001
SCOP term |
FDR (all) |
Annotation (direct or inherited) |
Siroheme synthase middle domains-like | 0 | DIRECT |
Class II viral fusion proteins C-terminal domain | 0 | DIRECT |
Methyltetrahydrofolate-utiluzing methyltransferases | 0 | DIRECT |
mRNA cap (Guanine N-7) methyltransferase | 0 | DIRECT |
TRAM domain | 0 | DIRECT |
Thiopurine S-methyltransferase | 0 | DIRECT |
Leucine carboxy methyltransferase Ppm1 | 0 | DIRECT |
Aspartate/ornithine carbamoyltransferase | 0 | DIRECT |
Inosicase | 0 | DIRECT |
Glucose-inhibited division protein B (GidB) | 0 | DIRECT |
Arylamine N-methyltransferase | 0 | DIRECT |
Protein-L-isoaspartyl O-methyltransferase | 0 | DIRECT |
C5 cytosine-specific DNA methylase, DCM | 0 | DIRECT |
Salicylic acid carboxyl methyltransferase (SAMT) | 0 | DIRECT |
SpoU-like RNA 2'-O ribose methyltransferase | 0 | DIRECT |
Aminomethyltransferase beta-barrel domain | 0 | DIRECT |
NOL1/NOP2/sun | 0 | DIRECT |
Plant O-methyltransferase, N-terminal domain | 0 | DIRECT |
N6 adenine-specific DNA methylase, DAM | 0 | DIRECT |
UbiE/COQ5-like | 0 | DIRECT |
Putative methyltransferase TM0872, insert domain | 0 | DIRECT |
MraW-like putative methyltransferases | 0 | DIRECT |
RuBisCo LSMT catalytic domain | 0 | DIRECT |
Methylated DNA-protein cysteine methyltransferase, C-terminal domain | 0 | DIRECT |
Arginine methyltransferase | 0 | DIRECT |
Methionine synthase SAM-binding domain | 0 | DIRECT |
RmsB N-terminal domain-like | 0 | DIRECT |
YggJ N-terminal domain-like | 0 | DIRECT |
AD-003 protein-like | 0 | DIRECT |
Methionine synthase domain | 0 | DIRECT |
Cobalamin-independent methionine synthase | 0 | DIRECT |
Homocysteine S-methyltransferase | 0 | DIRECT |
TRM1-like | 0 | DIRECT |
Formiminotransferase domain of formiminotransferase-cyclodeaminase. | 0 | DIRECT |
Flavivirus capsid protein C | 0 | DIRECT |
COMT-like | 0 | DIRECT |
Viral glycoprotein, central and dimerisation domains | 0 | DIRECT |
Thymidylate synthase/dCMP hydroxymethylase | 0 | DIRECT |
Amidinotransferase | 0 | DIRECT |
RNA methyltransferase FtsJ | 0 | DIRECT |
Met-10+ protein-like | 0 | DIRECT |
Hypothetical protein MJ0882 | 0 | DIRECT |
Hypothetical RNA methyltransferase domain (HRMD) | 0 | DIRECT |
tRNA(1-methyladenosine) methyltransferase-like | 0 | DIRECT |
SRA domain-like | 0 | DIRECT |
Mycolic acid cyclopropane synthase | 0 | DIRECT |
Siroheme synthase N-terminal domain-like | 0 | DIRECT |
Type II DNA methylase | 0 | DIRECT |
Histamine methyltransferase | 0 | DIRECT |
YbeA-like | 0 | DIRECT |
Plant O-methyltransferase, C-terminal domain | 0 | DIRECT |
Formyltransferase | 0 | DIRECT |
hypothetical RNA methyltransferase | 0 | DIRECT |
YggJ C-terminal domain-like | 0 | DIRECT |
Tetrapyrrole methylase | 0 | DIRECT |
Catalytic, N-terminal domain of histone methyltransferase Dot1l | 0 | DIRECT |
PWWP domain | 0 | DIRECT |
Chemotaxis receptor methyltransferase CheR, N-terminal domain | 0 | DIRECT |
RuBisCo LSMT C-terminal, substrate-binding domain | 0 | DIRECT |
rRNA adenine dimethylase-like | 0 | DIRECT |
Guanidinoacetate methyltransferase | 0 | DIRECT |
AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC | 0 | DIRECT |
RNA 2'-O ribose methyltransferase substrate binding domain | 0 | DIRECT |
N-6 DNA Methylase-like | 0 | DIRECT |
Post formyltransferase domain | 0 | DIRECT |
Aminomethyltransferase folate-binding domain | 0 | DIRECT |
N5-glutamine methyltransferase, HemK | 0 | DIRECT |
tRNA(m1G37)-methyltransferase TrmD | 0 | DIRECT |
Thymidylate synthase-complementing protein Thy1 | 0 | DIRECT |
Glycine N-methyltransferase | 0 | DIRECT |
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0 | DIRECT |
Methylated DNA-protein cysteine methyltransferase domain | 0 | DIRECT |
AF0751-like | 0 | DIRECT |
TrmB-like | 0 | DIRECT |
Methyltransferase 10 domain | 0 | DIRECT |
mRNA cap methylase | 0 | DIRECT |
Histone lysine methyltransferases | 0 | DIRECT |
GABA-aminotransferase-like | 0 | DIRECT |
Ketopantoate hydroxymethyltransferase PanB | 0 | DIRECT |
(Uracil-5-)-methyltransferase | 0 | DIRECT |
Chemotaxis receptor methyltransferase CheR, C-terminal domain | 0 | DIRECT |
MoCo biosynthesis proteins | 0.00000000000000972 | DIRECT |
WW domain | 0.0000000000001448 | DIRECT |
RNA helicase | 0.000000000002063 | DIRECT |
Chromo domain | 0.00000000000575 | DIRECT |
Cobalamin (vitamin B12)-binding domain | 0.00000000002134 | DIRECT |
PHD domain | 0.0000000003076 | DIRECT |
HMG-box | 0.000000007154 | DIRECT |
Methenyltetrahydrofolate cyclohydrolase-like | 0.000000007154 | DIRECT |
Dihydrofolate reductases | 0.000000268 | DIRECT |
Viral proteases | 0.000003291 | DIRECT |
Canonical RBD | 0.000022 | DIRECT |
AlkB-like | 0.01747 | INHERITED FROM: Methyltransferases || tRNA (carboxymethyluridine(34)-5-O)-methyltransfer |
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain | 0.05576 | INHERITED FROM: Methyltransferases || Histone-lysine N-methyltransferase |
Tyrosine-dependent oxidoreductases | 0.2912 | INHERITED FROM: UDP-4-amino-4-deoxy-L-arabinose formyltransferase || Hydroxymethyl-, formyl- and related transferases |
Bromodomain | 0.6062 | INHERITED FROM: Histone-lysine N-methyltransferase |
Hydantoinase (dihydropyrimidinase), catalytic domain | 0.8783 | INHERITED FROM: Carboxyl- and carbamoyltransferases || Aspartate carbamoyltransferase |
Carbamoyl phosphate synthetase, small subunit N-terminal domain | 0.9449 | INHERITED FROM: Carboxyl- and carbamoyltransferases || Aspartate carbamoyltransferase |
PurM C-terminal domain-like | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
BC N-terminal domain-like | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase || Aspartate carbamoyltransferase |
RNA-dependent RNA-polymerase | 1 | INHERITED FROM: Methyltransferases || mRNA (nucleoside-2'-O-)-methyltransferase || mRNA (guanine-N(7)-)-methyltransferase |
PurM N-terminal domain-like | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
BC ATP-binding domain-like | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase || Aspartate carbamoyltransferase |
Carbamoyl phosphate synthetase, large subunit connection domain | 1 | INHERITED FROM: Carboxyl- and carbamoyltransferases || Aspartate carbamoyltransferase |
BC C-terminal domain-like | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
SCOP term |
FDR (all) |
Annotation (direct or inherited) |
Siroheme synthase middle domains-like | 0 | Direct |
Class II viral fusion proteins C-terminal domain | 0 | Direct |
Methyltetrahydrofolate-utiluzing methyltransferases | 0 | Direct |
mRNA cap (Guanine N-7) methyltransferase | 0 | Direct |
TRAM domain | 0 | Direct |
Thiopurine S-methyltransferase | 0 | Direct |
Leucine carboxy methyltransferase Ppm1 | 0 | Direct |
Aspartate/ornithine carbamoyltransferase | 0 | Direct |
Inosicase | 0 | Direct |
Glucose-inhibited division protein B (GidB) | 0 | Direct |
Arylamine N-methyltransferase | 0 | Direct |
Protein-L-isoaspartyl O-methyltransferase | 0 | Direct |
C5 cytosine-specific DNA methylase, DCM | 0 | Direct |
Salicylic acid carboxyl methyltransferase (SAMT) | 0 | Direct |
SpoU-like RNA 2'-O ribose methyltransferase | 0 | Direct |
Aminomethyltransferase beta-barrel domain | 0 | Direct |
NOL1/NOP2/sun | 0 | Direct |
Plant O-methyltransferase, N-terminal domain | 0 | Direct |
N6 adenine-specific DNA methylase, DAM | 0 | Direct |
UbiE/COQ5-like | 0 | Direct |
Putative methyltransferase TM0872, insert domain | 0 | Direct |
MraW-like putative methyltransferases | 0 | Direct |
RuBisCo LSMT catalytic domain | 0 | Direct |
Methylated DNA-protein cysteine methyltransferase, C-terminal domain | 0 | Direct |
Arginine methyltransferase | 0 | Direct |
Methionine synthase SAM-binding domain | 0 | Direct |
RmsB N-terminal domain-like | 0 | Direct |
YggJ N-terminal domain-like | 0 | Direct |
AD-003 protein-like | 0 | Direct |
Methionine synthase domain | 0 | Direct |
Cobalamin-independent methionine synthase | 0 | Direct |
Homocysteine S-methyltransferase | 0 | Direct |
TRM1-like | 0 | Direct |
Formiminotransferase domain of formiminotransferase-cyclodeaminase. | 0 | Direct |
Flavivirus capsid protein C | 0 | Direct |
COMT-like | 0 | Direct |
Viral glycoprotein, central and dimerisation domains | 0 | Direct |
Thymidylate synthase/dCMP hydroxymethylase | 0 | Direct |
Amidinotransferase | 0 | Direct |
RNA methyltransferase FtsJ | 0 | Direct |
Met-10+ protein-like | 0 | Direct |
Hypothetical protein MJ0882 | 0 | Direct |
Hypothetical RNA methyltransferase domain (HRMD) | 0 | Direct |
tRNA(1-methyladenosine) methyltransferase-like | 0 | Direct |
SRA domain-like | 0 | Direct |
Mycolic acid cyclopropane synthase | 0 | Direct |
Siroheme synthase N-terminal domain-like | 0 | Direct |
Type II DNA methylase | 0 | Direct |
Histamine methyltransferase | 0 | Direct |
YbeA-like | 0 | Direct |
Plant O-methyltransferase, C-terminal domain | 0 | Direct |
Formyltransferase | 0 | Direct |
hypothetical RNA methyltransferase | 0 | Direct |
YggJ C-terminal domain-like | 0 | Direct |
Tetrapyrrole methylase | 0 | Direct |
Catalytic, N-terminal domain of histone methyltransferase Dot1l | 0 | Direct |
PWWP domain | 0 | Direct |
Chemotaxis receptor methyltransferase CheR, N-terminal domain | 0 | Direct |
RuBisCo LSMT C-terminal, substrate-binding domain | 0 | Direct |
rRNA adenine dimethylase-like | 0 | Direct |
Guanidinoacetate methyltransferase | 0 | Direct |
AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC | 0 | Direct |
RNA 2'-O ribose methyltransferase substrate binding domain | 0 | Direct |
N-6 DNA Methylase-like | 0 | Direct |
Post formyltransferase domain | 0 | Direct |
Aminomethyltransferase folate-binding domain | 0 | Direct |
N5-glutamine methyltransferase, HemK | 0 | Direct |
tRNA(m1G37)-methyltransferase TrmD | 0 | Direct |
Thymidylate synthase-complementing protein Thy1 | 0 | Direct |
Glycine N-methyltransferase | 0 | Direct |
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0 | Direct |
Methylated DNA-protein cysteine methyltransferase domain | 0 | Direct |
AF0751-like | 0 | Direct |
TrmB-like | 0 | Direct |
Methyltransferase 10 domain | 0 | Direct |
mRNA cap methylase | 0 | Direct |
Histone lysine methyltransferases | 0 | Direct |
GABA-aminotransferase-like | 0 | Direct |
Ketopantoate hydroxymethyltransferase PanB | 0 | Direct |
(Uracil-5-)-methyltransferase | 0 | Direct |
Chemotaxis receptor methyltransferase CheR, C-terminal domain | 0 | Direct |
MoCo biosynthesis proteins | 0.00000000000000972 | Direct |
WW domain | 0.0000000000001448 | Direct |
RNA helicase | 0.000000000002063 | Direct |
Chromo domain | 0.00000000000575 | Direct |
Cobalamin (vitamin B12)-binding domain | 0.00000000002134 | Direct |
PHD domain | 0.0000000003076 | Direct |
HMG-box | 0.000000007154 | Direct |
Methenyltetrahydrofolate cyclohydrolase-like | 0.000000007154 | Direct |
Dihydrofolate reductases | 0.000000268 | Direct |
Viral proteases | 0.000003291 | Direct |
Canonical RBD | 0.000022 | Direct |
AlkB-like | 0.01747 | Inherited |
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain | 0.05576 | Inherited |
Tyrosine-dependent oxidoreductases | 0.2912 | Inherited |
Bromodomain | 0.6062 | Inherited |
Hydantoinase (dihydropyrimidinase), catalytic domain | 0.8783 | Inherited |
Carbamoyl phosphate synthetase, small subunit N-terminal domain | 0.9449 | Inherited |
PurM C-terminal domain-like | 1 | Inherited |
BC N-terminal domain-like | 1 | Inherited |
RNA-dependent RNA-polymerase | 1 | Inherited |
PurM N-terminal domain-like | 1 | Inherited |
BC ATP-binding domain-like | 1 | Inherited |
Carbamoyl phosphate synthetase, large subunit connection domain | 1 | Inherited |
BC C-terminal domain-like | 1 | Inherited |
Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this EC term
 |
Plot tree as:
| |
Download Newick format tree:
|
(show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Jump to [ Top · EC Hierarchy · Superfamily · Family · Supra-domain ]
Supra-domain (including individual superfamily)
(show details)
Supra-domains annotated to this EC term (Not in SPEO)
Highlighted in gray are those with FDR>0.001
Supra-domain (Single) |
FDR (all) |
Annotation (direct or inherited) |
L30e-like | 0 | DIRECT |
KRAB domain (Kruppel-associated box) | 0 | DIRECT |
SET domain | 0 | DIRECT |
Homocysteine S-methyltransferase | 0 | DIRECT |
Folate-binding domain | 0 | DIRECT |
FAD/NAD(P)-binding domain | 0 | DIRECT |
Methylated DNA-protein cysteine methyltransferase, C-terminal domain | 0 | DIRECT |
Thymidylate synthase-complementing protein Thy1 | 0 | DIRECT |
Aminomethyltransferase beta-barrel domain | 0 | DIRECT |
Methionine synthase activation domain-like | 0 | DIRECT |
Methionine synthase domain | 0 | DIRECT |
UROD/MetE-like | 0 | DIRECT |
S-adenosyl-L-methionine-dependent methyltransferases | 0 | DIRECT |
Aspartate/ornithine carbamoyltransferase | 0 | DIRECT |
Radical SAM enzymes | 0 | DIRECT |
Cytidine deaminase-like | 0 | DIRECT |
Flavivirus capsid protein C | 0 | DIRECT |
Siroheme synthase middle domains-like | 0 | DIRECT |
Thymidylate synthase/dCMP hydroxymethylase | 0 | DIRECT |
Methylated DNA-protein cysteine methyltransferase domain | 0 | DIRECT |
Formyltransferase | 0 | DIRECT |
Putative methyltransferase TM0872, insert domain | 0 | DIRECT |
Phosphoenolpyruvate/pyruvate domain | 0 | DIRECT |
alpha/beta knot | 0 | DIRECT |
NusB-like | 0 | DIRECT |
RuBisCo LSMT C-terminal, substrate-binding domain | 0 | DIRECT |
Tetrapyrrole methylase | 0 | DIRECT |
FMT C-terminal domain-like | 0 | DIRECT |
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0 | DIRECT |
Formiminotransferase domain of formiminotransferase-cyclodeaminase. | 0 | DIRECT |
Chemotaxis receptor methyltransferase CheR, N-terminal domain | 0 | DIRECT |
Viral glycoprotein, central and dimerisation domains | 0 | DIRECT |
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain | 0 | DIRECT |
Methylglyoxal synthase-like | 0 | DIRECT |
WW domain | 0.000000000001287 | DIRECT |
RNA-binding domain, RBD | 0.00000000003944 | DIRECT |
Cobalamin (vitamin B12)-binding domain | 0.0000000002112 | DIRECT |
DNA-binding domain | 0.0000000003256 | DIRECT |
Tudor/PWWP/MBT | 0.000000000435 | DIRECT |
FYVE/PHD zinc finger | 0.0000000006493 | DIRECT |
Methenyltetrahydrofolate cyclohydrolase-like | 0.00000001776 | DIRECT |
HMG-box | 0.00000001776 | DIRECT |
PLP-dependent transferases | 0.0000000884 | DIRECT |
beta-beta-alpha zinc fingers | 0.0001195 | DIRECT |
Dihydrofolate reductase-like | 0.0001484 | DIRECT |
Chromo domain-like | 0.0007539 | DIRECT |
CYTH-like phosphatases | 0.0009838 | DIRECT |
Dihydropteroate synthetase-like | 0.001474 | INHERITED FROM: Methyltransferases || Methionine synthase || Tetrahydromethanopterin S-methyltransferase |
Nucleotide-binding domain | 0.001587 | INHERITED FROM: Methyltransferases || tRNA (5-methylaminomethyl-2-thiouridylate)-methylt |
FAD-linked reductases, C-terminal domain | 0.02003 | INHERITED FROM: Methyltransferases || tRNA (5-methylaminomethyl-2-thiouridylate)-methylt |
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain | 0.1037 | INHERITED FROM: Methyltransferases || Histone-lysine N-methyltransferase |
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.2173 | INHERITED FROM: tRNA (guanine(37)-N(1))-methyltransferase |
TPR-like | 0.5309 | INHERITED FROM: Histone-lysine N-methyltransferase |
Bromodomain | 0.6982 | INHERITED FROM: Histone-lysine N-methyltransferase |
SH3-domain | 1 | INHERITED FROM: Histone-arginine N-methyltransferase |
NAD(P)-binding Rossmann-fold domains | 1 | INHERITED FROM: Uroporphyrinogen-III C-methyltransferase || UDP-4-amino-4-deoxy-L-arabinose formyltransferase |
Carbamoyl phosphate synthetase, small subunit N-terminal domain | 1 | INHERITED FROM: Carboxyl- and carbamoyltransferases || Aspartate carbamoyltransferase |
DNA ligase/mRNA capping enzyme, catalytic domain | 1 | INHERITED FROM: mRNA (guanine-N(7)-)-methyltransferase |
Pentein | 1 | INHERITED FROM: Amidinotransferases |
Nucleic acid-binding proteins | 1 | INHERITED FROM: 23S rRNA (uracil(1939)-C(5))-methyltransferase |
Glutathione synthetase ATP-binding domain-like | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
Rudiment single hybrid motif | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
HD-domain/PDEase-like | 1 | INHERITED FROM: tRNA (cytidine(56)-2'-O)-methyltransferase |
lambda repressor-like DNA-binding domains | 1 | INHERITED FROM: DNA (cytosine-5-)-methyltransferase |
THUMP domain-like | 1 | INHERITED FROM: tRNA (guanine(10)-N(2))-dimethyltransferase |
PUA domain-like | 1 | INHERITED FROM: Methyltransferases || Histone-lysine N-methyltransferase || 23S rRNA (cytosine(1962)-C(5))-methyltransferase || 16S rRNA (uracil(1498)-N(3))-methyltransferase |
Trypsin-like serine proteases | 1 | INHERITED FROM: mRNA (nucleoside-2'-O-)-methyltransferase || mRNA (guanine-N(7)-)-methyltransferase |
E set domains | 1 | INHERITED FROM: mRNA (nucleoside-2'-O-)-methyltransferase || mRNA (guanine-N(7)-)-methyltransferase |
alpha/beta-Hydrolases | 1 | INHERITED FROM: Malonyl-CoA O-methyltransferase |
PurM C-terminal domain-like | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
P-loop containing nucleoside triphosphate hydrolases | 1 | INHERITED FROM: mRNA (nucleoside-2'-O-)-methyltransferase || mRNA (guanine-N(7)-)-methyltransferase |
PreATP-grasp domain | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
Clavaminate synthase-like | 1 | INHERITED FROM: tRNA (carboxymethyluridine(34)-5-O)-methyltransfer |
PurM N-terminal domain-like | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
Carbamoyl phosphate synthetase, large subunit connection domain | 1 | INHERITED FROM: Carboxyl- and carbamoyltransferases || Aspartate carbamoyltransferase |
"Winged helix" DNA-binding domain | 1 | INHERITED FROM: Acetylserotonin O-methyltransferase || Isoflavone 4'-O-methyltransferase || Quercetin 3-O-methyltransferase || Isoflavone 7-O-methyltransferase || Caffeate O-methyltransferase || (Iso)eugenol O-methyltransferase || 2,7,4'-trihydroxyisoflavanone 4'-O-methyltransfera |
DNA/RNA polymerases | 1 | INHERITED FROM: mRNA (nucleoside-2'-O-)-methyltransferase || mRNA (guanine-N(7)-)-methyltransferase |
Ankyrin repeat | 1 | INHERITED FROM: Histone-lysine N-methyltransferase |
Supra-domain (Single) |
FDR (all) |
Annotation (direct or inherited) |
L30e-like | 0 | Direct |
KRAB domain (Kruppel-associated box) | 0 | Direct |
SET domain | 0 | Direct |
Homocysteine S-methyltransferase | 0 | Direct |
Folate-binding domain | 0 | Direct |
FAD/NAD(P)-binding domain | 0 | Direct |
Methylated DNA-protein cysteine methyltransferase, C-terminal domain | 0 | Direct |
Thymidylate synthase-complementing protein Thy1 | 0 | Direct |
Aminomethyltransferase beta-barrel domain | 0 | Direct |
Methionine synthase activation domain-like | 0 | Direct |
Methionine synthase domain | 0 | Direct |
UROD/MetE-like | 0 | Direct |
S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
Aspartate/ornithine carbamoyltransferase | 0 | Direct |
Radical SAM enzymes | 0 | Direct |
Cytidine deaminase-like | 0 | Direct |
Flavivirus capsid protein C | 0 | Direct |
Siroheme synthase middle domains-like | 0 | Direct |
Thymidylate synthase/dCMP hydroxymethylase | 0 | Direct |
Methylated DNA-protein cysteine methyltransferase domain | 0 | Direct |
Formyltransferase | 0 | Direct |
Putative methyltransferase TM0872, insert domain | 0 | Direct |
Phosphoenolpyruvate/pyruvate domain | 0 | Direct |
alpha/beta knot | 0 | Direct |
NusB-like | 0 | Direct |
RuBisCo LSMT C-terminal, substrate-binding domain | 0 | Direct |
Tetrapyrrole methylase | 0 | Direct |
FMT C-terminal domain-like | 0 | Direct |
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0 | Direct |
Formiminotransferase domain of formiminotransferase-cyclodeaminase. | 0 | Direct |
Chemotaxis receptor methyltransferase CheR, N-terminal domain | 0 | Direct |
Viral glycoprotein, central and dimerisation domains | 0 | Direct |
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain | 0 | Direct |
Methylglyoxal synthase-like | 0 | Direct |
WW domain | 0.000000000001287 | Direct |
RNA-binding domain, RBD | 0.00000000003944 | Direct |
Cobalamin (vitamin B12)-binding domain | 0.0000000002112 | Direct |
DNA-binding domain | 0.0000000003256 | Direct |
Tudor/PWWP/MBT | 0.000000000435 | Direct |
FYVE/PHD zinc finger | 0.0000000006493 | Direct |
Methenyltetrahydrofolate cyclohydrolase-like | 0.00000001776 | Direct |
HMG-box | 0.00000001776 | Direct |
PLP-dependent transferases | 0.0000000884 | Direct |
beta-beta-alpha zinc fingers | 0.0001195 | Direct |
Dihydrofolate reductase-like | 0.0001484 | Direct |
Chromo domain-like | 0.0007539 | Direct |
CYTH-like phosphatases | 0.0009838 | Direct |
Dihydropteroate synthetase-like | 0.001474 | Inherited |
Nucleotide-binding domain | 0.001587 | Inherited |
FAD-linked reductases, C-terminal domain | 0.02003 | Inherited |
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain | 0.1037 | Inherited |
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.2173 | Inherited |
TPR-like | 0.5309 | Inherited |
Bromodomain | 0.6982 | Inherited |
SH3-domain | 1 | Inherited |
NAD(P)-binding Rossmann-fold domains | 1 | Inherited |
Carbamoyl phosphate synthetase, small subunit N-terminal domain | 1 | Inherited |
DNA ligase/mRNA capping enzyme, catalytic domain | 1 | Inherited |
Pentein | 1 | Inherited |
Nucleic acid-binding proteins | 1 | Inherited |
Glutathione synthetase ATP-binding domain-like | 1 | Inherited |
Rudiment single hybrid motif | 1 | Inherited |
HD-domain/PDEase-like | 1 | Inherited |
lambda repressor-like DNA-binding domains | 1 | Inherited |
THUMP domain-like | 1 | Inherited |
PUA domain-like | 1 | Inherited |
Trypsin-like serine proteases | 1 | Inherited |
E set domains | 1 | Inherited |
alpha/beta-Hydrolases | 1 | Inherited |
PurM C-terminal domain-like | 1 | Inherited |
P-loop containing nucleoside triphosphate hydrolases | 1 | Inherited |
PreATP-grasp domain | 1 | Inherited |
Clavaminate synthase-like | 1 | Inherited |
PurM N-terminal domain-like | 1 | Inherited |
Carbamoyl phosphate synthetase, large subunit connection domain | 1 | Inherited |
"Winged helix" DNA-binding domain | 1 | Inherited |
DNA/RNA polymerases | 1 | Inherited |
Ankyrin repeat | 1 | Inherited |
(show details)
Supra-domains annotated to this EC term (Not in SPEO)
Highlighted in gray are those with FDR>0.001
Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
54928,51197 54928 - RNA-binding domain, RBD 51197 - Clavaminate synthase-like | 0 | DIRECT |
57903,63748 57903 - FYVE/PHD zinc finger 63748 - Tudor/PWWP/MBT | 0 | DIRECT |
51726,51726 51726 - UROD/MetE-like 51726 - UROD/MetE-like | 0 | DIRECT |
53335,51905 53335 - S-adenosyl-L-methionine-dependent methyltransferases 51905 - FAD/NAD(P)-binding domain | 0 | DIRECT |
56983,81296 56983 - Viral glycoprotein, central and dimerisation domains 81296 - E set domains | 0 | DIRECT |
47413,53335 47413 - lambda repressor-like DNA-binding domains 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | DIRECT |
88697,75217 88697 - PUA domain-like 75217 - alpha/beta knot | 0 | DIRECT |
82282,51717 82282 - Homocysteine S-methyltransferase 51717 - Dihydropteroate synthetase-like | 0 | DIRECT |
54160,82199 54160 - Chromo domain-like 82199 - SET domain | 0 | DIRECT |
57903,47370 57903 - FYVE/PHD zinc finger 47370 - Bromodomain | 0 | DIRECT |
82199,57903 82199 - SET domain 57903 - FYVE/PHD zinc finger | 0 | DIRECT |
143437,53335 143437 - THUMP domain-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | DIRECT |
53597,55831 53597 - Dihydrofolate reductase-like 55831 - Thymidylate synthase/dCMP hydroxymethylase | 0 | DIRECT |
88697,82199 88697 - PUA domain-like 82199 - SET domain | 0 | DIRECT |
53335,50249 53335 - S-adenosyl-L-methionine-dependent methyltransferases 50249 - Nucleic acid-binding proteins | 0 | DIRECT |
53335,53383 53335 - S-adenosyl-L-methionine-dependent methyltransferases 53383 - PLP-dependent transferases | 0 | DIRECT |
53155,46767 53155 - Methylated DNA-protein cysteine methyltransferase domain 46767 - Methylated DNA-protein cysteine methyltransferase, C-terminal domain | 0 | DIRECT |
54171,82199 54171 - DNA-binding domain 82199 - SET domain | 0 | DIRECT |
53335,53335 53335 - S-adenosyl-L-methionine-dependent methyltransferases 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | DIRECT |
53790,53335 53790 - Tetrapyrrole methylase 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | DIRECT |
63748,82199 63748 - Tudor/PWWP/MBT 82199 - SET domain | 0 | DIRECT |
55315,75217 55315 - L30e-like 75217 - alpha/beta knot | 0 | DIRECT |
57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 0 | DIRECT |
75217,54593 75217 - alpha/beta knot 54593 - Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0 | DIRECT |
88697,53335 88697 - PUA domain-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | DIRECT |
53335,56672 53335 - S-adenosyl-L-methionine-dependent methyltransferases 56672 - DNA/RNA polymerases | 0 | DIRECT |
51717,47644 51717 - Dihydropteroate synthetase-like 47644 - Methionine synthase domain | 0 | DIRECT |
50044,53335 50044 - SH3-domain 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | DIRECT |
52335,51556 52335 - Methylglyoxal synthase-like 51556 - Metallo-dependent hydrolases | 0 | DIRECT |
56042,53328 56042 - PurM C-terminal domain-like 53328 - Formyltransferase | 0 | DIRECT |
54160,53335 54160 - Chromo domain-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | DIRECT |
53474,53335 53474 - alpha/beta-Hydrolases 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | DIRECT |
103025,101790 103025 - Folate-binding domain 101790 - Aminomethyltransferase beta-barrel domain | 0 | DIRECT |
53335,81799 53335 - S-adenosyl-L-methionine-dependent methyltransferases 81799 - Putative methyltransferase TM0872, insert domain | 0 | DIRECT |
52242,56507 52242 - Cobalamin (vitamin B12)-binding domain 56507 - Methionine synthase activation domain-like | 0 | DIRECT |
82199,81822 82199 - SET domain 81822 - RuBisCo LSMT C-terminal, substrate-binding domain | 0 | DIRECT |
75615,53790 75615 - Siroheme synthase middle domains-like 53790 - Tetrapyrrole methylase | 0 | DIRECT |
48403,82199 48403 - Ankyrin repeat 82199 - SET domain | 0 | DIRECT |
46785,53335 46785 - "Winged helix" DNA-binding domain 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | DIRECT |
53328,50486 53328 - Formyltransferase 50486 - FMT C-terminal domain-like | 0 | DIRECT |
55116,55116 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase. 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase. | 0 | DIRECT |
48013,53335 48013 - NusB-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | DIRECT |
47644,52242 47644 - Methionine synthase domain 52242 - Cobalamin (vitamin B12)-binding domain | 0 | DIRECT |
47757,53335 47757 - Chemotaxis receptor methyltransferase CheR, N-terminal domain 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | DIRECT |
55116,101262 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase. 101262 - Methenyltetrahydrofolate cyclohydrolase-like | 0 | DIRECT |
82199,48452 82199 - SET domain 48452 - TPR-like | 0 | DIRECT |
75217,75217 75217 - alpha/beta knot 75217 - alpha/beta knot | 0 | DIRECT |
57903,82199 57903 - FYVE/PHD zinc finger 82199 - SET domain | 0 | DIRECT |
75217,109604 75217 - alpha/beta knot 109604 - HD-domain/PDEase-like | 0 | DIRECT |
55154,56091 55154 - CYTH-like phosphatases 56091 - DNA ligase/mRNA capping enzyme, catalytic domain | 0 | DIRECT |
51197,53335 51197 - Clavaminate synthase-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | DIRECT |
50486,51735 50486 - FMT C-terminal domain-like 51735 - NAD(P)-binding Rossmann-fold domains | 0 | DIRECT |
51735,75615 51735 - NAD(P)-binding Rossmann-fold domains 75615 - Siroheme synthase middle domains-like | 0 | DIRECT |
82185,82199 82185 - Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 82199 - SET domain | 0 | DIRECT |
50249,53335 50249 - Nucleic acid-binding proteins 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | DIRECT |
52317,52440 52317 - Class I glutamine amidotransferase-like 52440 - PreATP-grasp domain | 0.00000001763 | DIRECT |
51246,55326 51246 - Rudiment single hybrid motif 55326 - PurM N-terminal domain-like | 0.0000001739 | DIRECT |
57903,57903 57903 - FYVE/PHD zinc finger 57903 - FYVE/PHD zinc finger | 0.000001804 | DIRECT |
50494,52540 50494 - Trypsin-like serine proteases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.000006958 | DIRECT |
51905,54373 51905 - FAD/NAD(P)-binding domain 54373 - FAD-linked reductases, C-terminal domain | 0.03198 | INHERITED FROM: Methyltransferases || tRNA (5-methylaminomethyl-2-thiouridylate)-methylt |
51971,54373 51971 - Nucleotide-binding domain 54373 - FAD-linked reductases, C-terminal domain | 0.09979 | INHERITED FROM: tRNA (5-methylaminomethyl-2-thiouridylate)-methylt |
52021,52317 52021 - Carbamoyl phosphate synthetase, small subunit N-terminal domain 52317 - Class I glutamine amidotransferase-like | 1 | INHERITED FROM: Carboxyl- and carbamoyltransferases || Aspartate carbamoyltransferase |
55326,56042 55326 - PurM N-terminal domain-like 56042 - PurM C-terminal domain-like | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
52540,52540 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 1 | INHERITED FROM: mRNA (nucleoside-2'-O-)-methyltransferase || mRNA (guanine-N(7)-)-methyltransferase |
56059,51246 56059 - Glutathione synthetase ATP-binding domain-like 51246 - Rudiment single hybrid motif | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
56059,52335 56059 - Glutathione synthetase ATP-binding domain-like 52335 - Methylglyoxal synthase-like | 1 | INHERITED FROM: Carboxyl- and carbamoyltransferases || Aspartate carbamoyltransferase |
53383,53383 53383 - PLP-dependent transferases 53383 - PLP-dependent transferases | 1 | INHERITED FROM: Methionine S-methyltransferase |
52440,56059 52440 - PreATP-grasp domain 56059 - Glutathione synthetase ATP-binding domain-like | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
56042,55326 56042 - PurM C-terminal domain-like 55326 - PurM N-terminal domain-like | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
48108,52440 48108 - Carbamoyl phosphate synthetase, large subunit connection domain 52440 - PreATP-grasp domain | 1 | INHERITED FROM: Carboxyl- and carbamoyltransferases || Aspartate carbamoyltransferase |
56059,48108 56059 - Glutathione synthetase ATP-binding domain-like 48108 - Carbamoyl phosphate synthetase, large subunit connection domain | 1 | INHERITED FROM: Carboxyl- and carbamoyltransferases || Aspartate carbamoyltransferase |
Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
54928,51197 54928 - RNA-binding domain, RBD 51197 - Clavaminate synthase-like | 0 | Direct |
57903,63748 57903 - FYVE/PHD zinc finger 63748 - Tudor/PWWP/MBT | 0 | Direct |
51726,51726 51726 - UROD/MetE-like 51726 - UROD/MetE-like | 0 | Direct |
53335,51905 53335 - S-adenosyl-L-methionine-dependent methyltransferases 51905 - FAD/NAD(P)-binding domain | 0 | Direct |
56983,81296 56983 - Viral glycoprotein, central and dimerisation domains 81296 - E set domains | 0 | Direct |
47413,53335 47413 - lambda repressor-like DNA-binding domains 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
88697,75217 88697 - PUA domain-like 75217 - alpha/beta knot | 0 | Direct |
82282,51717 82282 - Homocysteine S-methyltransferase 51717 - Dihydropteroate synthetase-like | 0 | Direct |
54160,82199 54160 - Chromo domain-like 82199 - SET domain | 0 | Direct |
57903,47370 57903 - FYVE/PHD zinc finger 47370 - Bromodomain | 0 | Direct |
82199,57903 82199 - SET domain 57903 - FYVE/PHD zinc finger | 0 | Direct |
143437,53335 143437 - THUMP domain-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
53597,55831 53597 - Dihydrofolate reductase-like 55831 - Thymidylate synthase/dCMP hydroxymethylase | 0 | Direct |
88697,82199 88697 - PUA domain-like 82199 - SET domain | 0 | Direct |
53335,50249 53335 - S-adenosyl-L-methionine-dependent methyltransferases 50249 - Nucleic acid-binding proteins | 0 | Direct |
53335,53383 53335 - S-adenosyl-L-methionine-dependent methyltransferases 53383 - PLP-dependent transferases | 0 | Direct |
53155,46767 53155 - Methylated DNA-protein cysteine methyltransferase domain 46767 - Methylated DNA-protein cysteine methyltransferase, C-terminal domain | 0 | Direct |
54171,82199 54171 - DNA-binding domain 82199 - SET domain | 0 | Direct |
53335,53335 53335 - S-adenosyl-L-methionine-dependent methyltransferases 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
53790,53335 53790 - Tetrapyrrole methylase 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
63748,82199 63748 - Tudor/PWWP/MBT 82199 - SET domain | 0 | Direct |
55315,75217 55315 - L30e-like 75217 - alpha/beta knot | 0 | Direct |
57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 0 | Direct |
75217,54593 75217 - alpha/beta knot 54593 - Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0 | Direct |
88697,53335 88697 - PUA domain-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
53335,56672 53335 - S-adenosyl-L-methionine-dependent methyltransferases 56672 - DNA/RNA polymerases | 0 | Direct |
51717,47644 51717 - Dihydropteroate synthetase-like 47644 - Methionine synthase domain | 0 | Direct |
50044,53335 50044 - SH3-domain 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
52335,51556 52335 - Methylglyoxal synthase-like 51556 - Metallo-dependent hydrolases | 0 | Direct |
56042,53328 56042 - PurM C-terminal domain-like 53328 - Formyltransferase | 0 | Direct |
54160,53335 54160 - Chromo domain-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
53474,53335 53474 - alpha/beta-Hydrolases 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
103025,101790 103025 - Folate-binding domain 101790 - Aminomethyltransferase beta-barrel domain | 0 | Direct |
53335,81799 53335 - S-adenosyl-L-methionine-dependent methyltransferases 81799 - Putative methyltransferase TM0872, insert domain | 0 | Direct |
52242,56507 52242 - Cobalamin (vitamin B12)-binding domain 56507 - Methionine synthase activation domain-like | 0 | Direct |
82199,81822 82199 - SET domain 81822 - RuBisCo LSMT C-terminal, substrate-binding domain | 0 | Direct |
75615,53790 75615 - Siroheme synthase middle domains-like 53790 - Tetrapyrrole methylase | 0 | Direct |
48403,82199 48403 - Ankyrin repeat 82199 - SET domain | 0 | Direct |
46785,53335 46785 - "Winged helix" DNA-binding domain 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
53328,50486 53328 - Formyltransferase 50486 - FMT C-terminal domain-like | 0 | Direct |
55116,55116 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase. 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase. | 0 | Direct |
48013,53335 48013 - NusB-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
47644,52242 47644 - Methionine synthase domain 52242 - Cobalamin (vitamin B12)-binding domain | 0 | Direct |
47757,53335 47757 - Chemotaxis receptor methyltransferase CheR, N-terminal domain 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
55116,101262 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase. 101262 - Methenyltetrahydrofolate cyclohydrolase-like | 0 | Direct |
82199,48452 82199 - SET domain 48452 - TPR-like | 0 | Direct |
75217,75217 75217 - alpha/beta knot 75217 - alpha/beta knot | 0 | Direct |
57903,82199 57903 - FYVE/PHD zinc finger 82199 - SET domain | 0 | Direct |
75217,109604 75217 - alpha/beta knot 109604 - HD-domain/PDEase-like | 0 | Direct |
55154,56091 55154 - CYTH-like phosphatases 56091 - DNA ligase/mRNA capping enzyme, catalytic domain | 0 | Direct |
51197,53335 51197 - Clavaminate synthase-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
50486,51735 50486 - FMT C-terminal domain-like 51735 - NAD(P)-binding Rossmann-fold domains | 0 | Direct |
51735,75615 51735 - NAD(P)-binding Rossmann-fold domains 75615 - Siroheme synthase middle domains-like | 0 | Direct |
82185,82199 82185 - Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 82199 - SET domain | 0 | Direct |
50249,53335 50249 - Nucleic acid-binding proteins 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
52317,52440 52317 - Class I glutamine amidotransferase-like 52440 - PreATP-grasp domain | 0.00000001763 | Direct |
51246,55326 51246 - Rudiment single hybrid motif 55326 - PurM N-terminal domain-like | 0.0000001739 | Direct |
57903,57903 57903 - FYVE/PHD zinc finger 57903 - FYVE/PHD zinc finger | 0.000001804 | Direct |
50494,52540 50494 - Trypsin-like serine proteases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.000006958 | Direct |
51905,54373 51905 - FAD/NAD(P)-binding domain 54373 - FAD-linked reductases, C-terminal domain | 0.03198 | Inherited |
51971,54373 51971 - Nucleotide-binding domain 54373 - FAD-linked reductases, C-terminal domain | 0.09979 | Inherited |
52021,52317 52021 - Carbamoyl phosphate synthetase, small subunit N-terminal domain 52317 - Class I glutamine amidotransferase-like | 1 | Inherited |
55326,56042 55326 - PurM N-terminal domain-like 56042 - PurM C-terminal domain-like | 1 | Inherited |
52540,52540 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 1 | Inherited |
56059,51246 56059 - Glutathione synthetase ATP-binding domain-like 51246 - Rudiment single hybrid motif | 1 | Inherited |
56059,52335 56059 - Glutathione synthetase ATP-binding domain-like 52335 - Methylglyoxal synthase-like | 1 | Inherited |
53383,53383 53383 - PLP-dependent transferases 53383 - PLP-dependent transferases | 1 | Inherited |
52440,56059 52440 - PreATP-grasp domain 56059 - Glutathione synthetase ATP-binding domain-like | 1 | Inherited |
56042,55326 56042 - PurM C-terminal domain-like 55326 - PurM N-terminal domain-like | 1 | Inherited |
48108,52440 48108 - Carbamoyl phosphate synthetase, large subunit connection domain 52440 - PreATP-grasp domain | 1 | Inherited |
56059,48108 56059 - Glutathione synthetase ATP-binding domain-like 48108 - Carbamoyl phosphate synthetase, large subunit connection domain | 1 | Inherited |
(show details)
Supra-domains annotated to this EC term (Not in SPEO)
Highlighted in gray are those with FDR>0.001
Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
57667,57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 0 | DIRECT |
53328,50486,51735 53328 - Formyltransferase 50486 - FMT C-terminal domain-like 51735 - NAD(P)-binding Rossmann-fold domains | 0 | DIRECT |
57903,57903,57903 57903 - FYVE/PHD zinc finger 57903 - FYVE/PHD zinc finger 57903 - FYVE/PHD zinc finger | 0 | DIRECT |
51717,47644,52242 51717 - Dihydropteroate synthetase-like 47644 - Methionine synthase domain 52242 - Cobalamin (vitamin B12)-binding domain | 0 | DIRECT |
55326,56042,53328 55326 - PurM N-terminal domain-like 56042 - PurM C-terminal domain-like 53328 - Formyltransferase | 0 | DIRECT |
56059,52335,51556 56059 - Glutathione synthetase ATP-binding domain-like 52335 - Methylglyoxal synthase-like 51556 - Metallo-dependent hydrolases | 0 | DIRECT |
54928,51197,53335 54928 - RNA-binding domain, RBD 51197 - Clavaminate synthase-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | DIRECT |
82282,51717,47644 82282 - Homocysteine S-methyltransferase 51717 - Dihydropteroate synthetase-like 47644 - Methionine synthase domain | 0 | DIRECT |
55116,55116,101262 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase. 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase. 101262 - Methenyltetrahydrofolate cyclohydrolase-like | 0 | DIRECT |
53335,51905,54373 53335 - S-adenosyl-L-methionine-dependent methyltransferases 51905 - FAD/NAD(P)-binding domain 54373 - FAD-linked reductases, C-terminal domain | 0 | DIRECT |
52335,51556,51338 52335 - Methylglyoxal synthase-like 51556 - Metallo-dependent hydrolases 51338 - Composite domain of metallo-dependent hydrolases | 0 | DIRECT |
57903,63748,82199 57903 - FYVE/PHD zinc finger 63748 - Tudor/PWWP/MBT 82199 - SET domain | 0 | DIRECT |
47644,52242,56507 47644 - Methionine synthase domain 52242 - Cobalamin (vitamin B12)-binding domain 56507 - Methionine synthase activation domain-like | 0 | DIRECT |
51735,75615,53790 51735 - NAD(P)-binding Rossmann-fold domains 75615 - Siroheme synthase middle domains-like 53790 - Tetrapyrrole methylase | 0 | DIRECT |
63748,82199,57903 63748 - Tudor/PWWP/MBT 82199 - SET domain 57903 - FYVE/PHD zinc finger | 0 | DIRECT |
53335,53383,53383 53335 - S-adenosyl-L-methionine-dependent methyltransferases 53383 - PLP-dependent transferases 53383 - PLP-dependent transferases | 0 | DIRECT |
50494,52540,52540 50494 - Trypsin-like serine proteases 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.000000000001573 | DIRECT |
52317,52440,56059 52317 - Class I glutamine amidotransferase-like 52440 - PreATP-grasp domain 56059 - Glutathione synthetase ATP-binding domain-like | 0.00000001763 | DIRECT |
52021,52317,52440 52021 - Carbamoyl phosphate synthetase, small subunit N-terminal domain 52317 - Class I glutamine amidotransferase-like 52440 - PreATP-grasp domain | 0.00000001763 | DIRECT |
51246,55326,56042 51246 - Rudiment single hybrid motif 55326 - PurM N-terminal domain-like 56042 - PurM C-terminal domain-like | 0.0000001739 | DIRECT |
56059,51246,55326 56059 - Glutathione synthetase ATP-binding domain-like 51246 - Rudiment single hybrid motif 55326 - PurM N-terminal domain-like | 0.0000001739 | DIRECT |
52440,56059,48108 52440 - PreATP-grasp domain 56059 - Glutathione synthetase ATP-binding domain-like 48108 - Carbamoyl phosphate synthetase, large subunit connection domain | 1 | INHERITED FROM: Carboxyl- and carbamoyltransferases || Aspartate carbamoyltransferase |
48108,52440,56059 48108 - Carbamoyl phosphate synthetase, large subunit connection domain 52440 - PreATP-grasp domain 56059 - Glutathione synthetase ATP-binding domain-like | 1 | INHERITED FROM: Carboxyl- and carbamoyltransferases || Aspartate carbamoyltransferase |
56059,48108,52440 56059 - Glutathione synthetase ATP-binding domain-like 48108 - Carbamoyl phosphate synthetase, large subunit connection domain 52440 - PreATP-grasp domain | 1 | INHERITED FROM: Carboxyl- and carbamoyltransferases || Aspartate carbamoyltransferase |
55326,56042,55326 55326 - PurM N-terminal domain-like 56042 - PurM C-terminal domain-like 55326 - PurM N-terminal domain-like | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
56042,55326,56042 56042 - PurM C-terminal domain-like 55326 - PurM N-terminal domain-like 56042 - PurM C-terminal domain-like | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
52440,56059,51246 52440 - PreATP-grasp domain 56059 - Glutathione synthetase ATP-binding domain-like 51246 - Rudiment single hybrid motif | 1 | INHERITED FROM: Phosphoribosylglycinamide formyltransferase |
52440,56059,52335 52440 - PreATP-grasp domain 56059 - Glutathione synthetase ATP-binding domain-like 52335 - Methylglyoxal synthase-like | 1 | INHERITED FROM: Carboxyl- and carbamoyltransferases || Aspartate carbamoyltransferase |
Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
57667,57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 0 | Direct |
53328,50486,51735 53328 - Formyltransferase 50486 - FMT C-terminal domain-like 51735 - NAD(P)-binding Rossmann-fold domains | 0 | Direct |
57903,57903,57903 57903 - FYVE/PHD zinc finger 57903 - FYVE/PHD zinc finger 57903 - FYVE/PHD zinc finger | 0 | Direct |
51717,47644,52242 51717 - Dihydropteroate synthetase-like 47644 - Methionine synthase domain 52242 - Cobalamin (vitamin B12)-binding domain | 0 | Direct |
55326,56042,53328 55326 - PurM N-terminal domain-like 56042 - PurM C-terminal domain-like 53328 - Formyltransferase | 0 | Direct |
56059,52335,51556 56059 - Glutathione synthetase ATP-binding domain-like 52335 - Methylglyoxal synthase-like 51556 - Metallo-dependent hydrolases | 0 | Direct |
54928,51197,53335 54928 - RNA-binding domain, RBD 51197 - Clavaminate synthase-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
82282,51717,47644 82282 - Homocysteine S-methyltransferase 51717 - Dihydropteroate synthetase-like 47644 - Methionine synthase domain | 0 | Direct |
55116,55116,101262 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase. 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase. 101262 - Methenyltetrahydrofolate cyclohydrolase-like | 0 | Direct |
53335,51905,54373 53335 - S-adenosyl-L-methionine-dependent methyltransferases 51905 - FAD/NAD(P)-binding domain 54373 - FAD-linked reductases, C-terminal domain | 0 | Direct |
52335,51556,51338 52335 - Methylglyoxal synthase-like 51556 - Metallo-dependent hydrolases 51338 - Composite domain of metallo-dependent hydrolases | 0 | Direct |
57903,63748,82199 57903 - FYVE/PHD zinc finger 63748 - Tudor/PWWP/MBT 82199 - SET domain | 0 | Direct |
47644,52242,56507 47644 - Methionine synthase domain 52242 - Cobalamin (vitamin B12)-binding domain 56507 - Methionine synthase activation domain-like | 0 | Direct |
51735,75615,53790 51735 - NAD(P)-binding Rossmann-fold domains 75615 - Siroheme synthase middle domains-like 53790 - Tetrapyrrole methylase | 0 | Direct |
63748,82199,57903 63748 - Tudor/PWWP/MBT 82199 - SET domain 57903 - FYVE/PHD zinc finger | 0 | Direct |
53335,53383,53383 53335 - S-adenosyl-L-methionine-dependent methyltransferases 53383 - PLP-dependent transferases 53383 - PLP-dependent transferases | 0 | Direct |
50494,52540,52540 50494 - Trypsin-like serine proteases 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.000000000001573 | Direct |
52317,52440,56059 52317 - Class I glutamine amidotransferase-like 52440 - PreATP-grasp domain 56059 - Glutathione synthetase ATP-binding domain-like | 0.00000001763 | Direct |
52021,52317,52440 52021 - Carbamoyl phosphate synthetase, small subunit N-terminal domain 52317 - Class I glutamine amidotransferase-like 52440 - PreATP-grasp domain | 0.00000001763 | Direct |
51246,55326,56042 51246 - Rudiment single hybrid motif 55326 - PurM N-terminal domain-like 56042 - PurM C-terminal domain-like | 0.0000001739 | Direct |
56059,51246,55326 56059 - Glutathione synthetase ATP-binding domain-like 51246 - Rudiment single hybrid motif 55326 - PurM N-terminal domain-like | 0.0000001739 | Direct |
52440,56059,48108 52440 - PreATP-grasp domain 56059 - Glutathione synthetase ATP-binding domain-like 48108 - Carbamoyl phosphate synthetase, large subunit connection domain | 1 | Inherited |
48108,52440,56059 48108 - Carbamoyl phosphate synthetase, large subunit connection domain 52440 - PreATP-grasp domain 56059 - Glutathione synthetase ATP-binding domain-like | 1 | Inherited |
56059,48108,52440 56059 - Glutathione synthetase ATP-binding domain-like 48108 - Carbamoyl phosphate synthetase, large subunit connection domain 52440 - PreATP-grasp domain | 1 | Inherited |
55326,56042,55326 55326 - PurM N-terminal domain-like 56042 - PurM C-terminal domain-like 55326 - PurM N-terminal domain-like | 1 | Inherited |
56042,55326,56042 56042 - PurM C-terminal domain-like 55326 - PurM N-terminal domain-like 56042 - PurM C-terminal domain-like | 1 | Inherited |
52440,56059,51246 52440 - PreATP-grasp domain 56059 - Glutathione synthetase ATP-binding domain-like 51246 - Rudiment single hybrid motif | 1 | Inherited |
52440,56059,52335 52440 - PreATP-grasp domain 56059 - Glutathione synthetase ATP-binding domain-like 52335 - Methylglyoxal synthase-like | 1 | Inherited |
Plot distribution on phylogenetic tree for Individual Supra-domains annotated by this EC term
 |
Plot tree as:
| |
Download Newick format tree:
|
(show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
|