SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Superfamily assignments for Methanococcus maripaludis C7


Methanococcus maripaludis C7 superfamily assignments

Taxonomy
Taxonomy browser entry

Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus; Methanococcus maripaludis; Methanococcus maripaludis C7

Downloads
Fasta format sequences
Domain assignments

Jump to [ Top of page · Domain assignments ]

Assignment statistics

Sequences: 1788 total
1209 (68 %) with assignment
286 average length
63 % amino acid coverage
Domains: 1636 total
510 unique superfamilies
317 unique families
266 average length
3.2 average superfamily size
69 % formed by duplication
Domain combinations: 247 domain pairs
653 unique architectures

Jump to [ Top of page · Assignment statistics ]

Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
126 118 38 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
41 31 14 0 SCOP 54862 4Fe-4S ferredoxins
40 40 16 1 SCOP 46785 "Winged helix" DNA-binding domain
38 38 6 10 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
32 32 19 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
30 24 16 2 SCOP 50249 Nucleic acid-binding proteins
27 27 4 1 SCOP 102114 Radical SAM enzymes
23 23 6 1 SCOP 53850 Periplasmic binding protein-like II
20 16 7 3 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
20 17 10 0 SCOP 54631 CBS-domain pair
17 17 8 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
15 14 9 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
15 15 1 5 SCOP 53383 PLP-dependent transferases
14 14 4 1 SCOP 53448 Nucleotide-diphospho-sugar transferases
14 14 9 2 SCOP 52374 Nucleotidylyl transferase
14 13 9 3 SCOP 54211 Ribosomal protein S5 domain 2-like
14 8 5 0 SCOP 48452 TPR-like
14 11 10 0 SCOP 55021 ACT-like
13 12 3 1 SCOP 161098 MetI-like
13 12 6 1 SCOP 51905 FAD/NAD(P)-binding domain
13 13 3 2 SCOP 53807 "Helical backbone" metal receptor
12 12 10 2 SCOP 55681 Class II aaRS and biotin synthetases
12 12 3 3 SCOP 56281 Metallo-hydrolase/oxidoreductase
11 11 5 3 SCOP 51569 Aldolase
11 11 5 1 SCOP 52317 Class I glutamine amidotransferase-like
11 10 8 2 SCOP 50447 Translation proteins
10 10 2 5 SCOP 51366 Ribulose-phoshate binding barrel
10 7 4 0 SCOP 51126 Pectin lyase-like
9 9 4 2 SCOP 51556 Metallo-dependent hydrolases
9 9 6 0 SCOP 47413 lambda repressor-like DNA-binding domains
9 9 2 2 SCOP 54913 GlnB-like
9 8 3 1 SCOP 56042 PurM C-terminal domain-like
9 8 3 1 SCOP 55326 PurM N-terminal domain-like
8 7 3 2 SCOP 53271 PRTase-like
8 8 3 0 SCOP 52218 Flavoproteins
8 8 2 2 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
8 8 6 1 SCOP 88697 PUA domain-like
8 5 3 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
7 7 4 2 SCOP 56784 HAD-like
7 7 3 1 SCOP 56300 Metallo-dependent phosphatases
7 7 2 1 SCOP 47240 Ferritin-like
7 7 3 1 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
7 7 3 2 SCOP 51182 RmlC-like cupins
7 7 5 0 SCOP 46548 alpha-helical ferredoxin
7 7 3 2 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
7 7 4 0 SCOP 52922 TK C-terminal domain-like
6 6 1 1 SCOP 57829 Zn-binding ribosomal proteins
6 6 1 1 SCOP 53790 Tetrapyrrole methylase
6 6 4 3 SCOP 53613 Ribokinase-like
6 6 3 0 SCOP 56112 Protein kinase-like (PK-like)
6 6 4 1 SCOP 50104 Translation proteins SH3-like domain
6 6 5 2 SCOP 55120 Pseudouridine synthase
6 6 4 1 SCOP 64182 DHH phosphoesterases
6 6 4 1 SCOP 53067 Actin-like ATPase domain
6 6 5 3 SCOP 53098 Ribonuclease H-like
6 6 3 1 SCOP 51395 FMN-linked oxidoreductases
6 6 4 2 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
6 5 4 0 SCOP 48371 ARM repeat
6 6 2 0 SCOP 50475 FMN-binding split barrel
6 6 1 1 SCOP 56801 Acetyl-CoA synthetase-like
6 6 2 0 SCOP 56349 DNA breaking-rejoining enzymes
6 5 3 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
6 6 3 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
6 6 2 0 SCOP 50331 MOP-like
6 6 5 0 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 6 2 0 SCOP 103190 Sensory domain-like
6 6 2 1 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
6 5 4 2 SCOP 52440 PreATP-grasp domain
6 6 2 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
6 2 2 0 SCOP 117074 Hypothetical protein PA1324
6 2 1 0 SCOP 53738 Phosphoglucomutase, first 3 domains
5 5 2 1 SCOP 52833 Thioredoxin-like
5 5 2 2 SCOP 53633 Carbamate kinase-like
5 5 3 0 SCOP 46689 Homeodomain-like
5 5 5 1 SCOP 52954 Class II aaRS ABD-related
5 4 3 0 SCOP 57783 Zinc beta-ribbon
5 5 2 0 SCOP 89550 PHP domain-like
5 5 4 0 SCOP 50692 ADC-like
5 5 1 0 SCOP 56762 HydB/Nqo4-like
5 5 1 0 SCOP 53146 Nitrogenase accessory factor-like
4 4 3 1 SCOP 53137 Translational machinery components
4 4 1 0 SCOP 51658 Xylose isomerase-like
4 4 2 0 SCOP 103473 MFS general substrate transporter
4 4 2 3 SCOP 75217 alpha/beta knot
4 4 4 1 SCOP 109755 PhoU-like
4 4 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
4 4 2 2 SCOP 51161 Trimeric LpxA-like enzymes
4 4 1 0 SCOP 56770 HydA/Nqo6-like
4 4 3 0 SCOP 50182 Sm-like ribonucleoproteins
4 4 2 1 SCOP 109604 HD-domain/PDEase-like
4 4 3 1 SCOP 55315 L30e-like
4 4 1 0 SCOP 51726 UROD/MetE-like
4 4 3 1 SCOP 88723 PIN domain-like
4 4 2 2 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
4 4 4 2 SCOP 55931 Glutamine synthetase/guanido kinase
4 4 3 1 SCOP 52172 CheY-like
4 4 3 0 SCOP 51717 Dihydropteroate synthetase-like
4 4 2 1 SCOP 52016 LeuD/IlvD-like
4 4 3 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
4 4 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
4 4 3 2 SCOP 52467 DHS-like NAD/FAD-binding domain
4 4 3 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
4 4 2 0 SCOP 57802 Rubredoxin-like
4 2 1 0 SCOP 53901 Thiolase-like
4 4 3 0 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
4 4 2 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
4 3 3 0 SCOP 54980 EF-G C-terminal domain-like
4 3 3 1 SCOP 52210 Succinyl-CoA synthetase domains
3 3 1 2 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
3 3 1 2 SCOP 55282 RL5-like
3 3 2 2 SCOP 100950 NagB/RpiA/CoA transferase-like
3 3 1 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
3 3 3 1 SCOP 52980 Restriction endonuclease-like
3 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
3 3 2 2 SCOP 55821 YrdC/RibB
3 3 2 1 SCOP 48150 DNA-glycosylase
3 3 2 0 SCOP 52096 ClpP/crotonase
3 3 2 0 SCOP 75169 DsrEFH-like
3 3 2 0 SCOP 47113 Histone-fold
3 3 1 0 SCOP 53649 Alkaline phosphatase-like
3 3 1 0 SCOP 118196 YaeB-like
3 3 1 1 SCOP 111352 Ammonium transporter
3 3 2 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
3 2 2 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
3 3 3 1 SCOP 53041 Resolvase-like
3 3 1 0 SCOP 53163 HybD-like
3 2 2 0 SCOP 47781 RuvA domain 2-like
3 3 2 0 SCOP 63867 MoeA C-terminal domain-like
3 3 2 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
3 3 1 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
3 3 1 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
3 3 2 1 SCOP 51246 Rudiment single hybrid motif
3 3 2 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
3 3 2 0 SCOP 81665 Calcium ATPase, transmembrane domain M
3 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
3 3 2 2 SCOP 55088 Methyl-coenzyme M reductase subunits
3 3 1 1 SCOP 55060 GHMP Kinase, C-terminal domain
3 3 2 1 SCOP 63882 MoeA N-terminal region -like
3 3 2 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
3 3 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 2 0 SCOP 81653 Calcium ATPase, transduction domain A
2 2 1 1 SCOP 53927 Cytidine deaminase-like
2 2 2 2 SCOP 53697 SIS domain
2 2 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 1 1 SCOP 48557 L-aspartase-like
2 2 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
2 2 1 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 1 2 SCOP 53720 ALDH-like
2 2 1 1 SCOP 51283 dUTPase-like
2 2 2 1 SCOP 51713 tRNA-guanine transglycosylase
2 2 2 0 SCOP 54292 2Fe-2S ferredoxin-like
2 2 2 1 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
2 2 1 0 SCOP 54285 MoaD/ThiS
2 2 2 2 SCOP 55205 EPT/RTPC-like
2 2 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
2 2 2 0 SCOP 64307 SirA-like
2 2 1 0 SCOP 52121 Lumazine synthase
2 2 2 1 SCOP 51419 PLP-binding barrel
2 2 2 1 SCOP 53187 Zn-dependent exopeptidases
2 2 1 0 SCOP 55469 FMN-dependent nitroreductase-like
2 2 1 1 SCOP 50891 Cyclophilin-like
2 2 2 1 SCOP 54534 FKBP-like
2 2 1 1 SCOP 46579 Prefoldin
2 2 1 0 SCOP 54001 Cysteine proteinases
2 2 1 0 SCOP 63393 RNA polymerase subunits
2 2 1 0 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
2 1 1 1 SCOP 54506 Diaminopimelate epimerase-like
2 2 2 0 SCOP 53639 AraD/HMP-PK domain-like
2 2 1 1 SCOP 52972 ITPase-like
2 2 2 0 SCOP 88713 Glycoside hydrolase/deacetylase
2 2 2 0 SCOP 55257 RBP11-like subunits of RNA polymerase
2 2 2 0 SCOP 55008 HMA, heavy metal-associated domain
2 2 2 0 SCOP 52058 L domain-like
2 2 1 0 SCOP 69118 AhpD-like
2 2 1 0 SCOP 52091 SpoIIaa-like
2 2 2 2 SCOP 51998 PFL-like glycyl radical enzymes
2 1 1 0 SCOP 46955 Putative DNA-binding domain
2 2 2 1 SCOP 54909 Dimeric alpha+beta barrel
2 2 1 0 SCOP 50494 Trypsin-like serine proteases
2 2 2 0 SCOP 47598 Ribbon-helix-helix
2 2 2 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
2 2 2 1 SCOP 50341 CheW-like
2 2 2 0 SCOP 82771 GIY-YIG endonuclease
2 2 2 0 SCOP 81301 Nucleotidyltransferase
2 2 1 1 SCOP 53732 Aconitase iron-sulfur domain
2 1 1 1 SCOP 116734 DNA methylase specificity domain
2 1 1 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
2 2 2 0 SCOP 89095 GatB/YqeY motif
2 2 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
2 2 2 1 SCOP 56821 Prismane protein-like
2 2 1 1 SCOP 144010 CofE-like
2 2 1 0 SCOP 50037 C-terminal domain of transcriptional repressors
2 2 1 0 SCOP 159659 Cgl1923-like
2 2 1 0 SCOP 103039 CheC-like
2 2 2 0 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
2 2 1 0 SCOP 50346 PRC-barrel domain
2 2 2 1 SCOP 143437 THUMP domain-like
2 2 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
2 2 1 1 SCOP 143865 CorA soluble domain-like
2 1 1 0 SCOP 55979 DNA clamp
2 2 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
2 2 2 0 SCOP 143555 FwdE-like
2 2 2 1 SCOP 52935 PK C-terminal domain-like
2 2 1 0 SCOP 140371 Vng1086c-like
2 2 1 0 SCOP 158472 HAMP domain-like
2 2 2 0 SCOP 116726 TrkA C-terminal domain-like
2 2 2 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
2 2 1 1 SCOP 55307 Tubulin C-terminal domain-like
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 2 2 SCOP 50621 Alanine racemase C-terminal domain-like
2 2 2 1 SCOP 54826 Enolase N-terminal domain-like
2 2 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
2 2 2 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
2 2 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
2 1 1 1 SCOP 47954 Cyclin-like
2 1 1 0 SCOP 55945 TATA-box binding protein-like
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
2 2 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
2 2 1 0 SCOP 81271 TGS-like
2 2 1 1 SCOP 48081 Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
2 2 2 0 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 0 SCOP 88802 Pre-PUA domain
2 1 1 0 SCOP 55052 CheY-binding domain of CheA
2 1 1 1 SCOP 55112 Formylmethanofuran:tetrahydromethanopterin formyltransferase
1 1 1 0 SCOP 56731 DNA primase core
1 1 1 0 SCOP 53474 alpha/beta-Hydrolases
1 1 1 1 SCOP 81338 Aquaporin-like
1 1 1 1 SCOP 53167 Purine and uridine phosphorylases
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 0 SCOP 143597 YojJ-like
1 1 1 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
1 1 1 0 SCOP 54197 HIT-like
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 46946 S13-like H2TH domain
1 1 1 0 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 1 SCOP 53597 Dihydrofolate reductase-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 0 SCOP 55174 Alpha-L RNA-binding motif
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 0 SCOP 55811 Nudix
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 1 SCOP 56276 S-adenosylmethionine decarboxylase
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
1 1 1 1 SCOP 56655 Carbohydrate phosphatase
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 1 SCOP 48576 Terpenoid synthases
1 1 1 1 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 56796 Dehydroquinate synthase-like
1 1 1 1 SCOP 49764 HSP20-like chaperones
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 1 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 0 SCOP 52042 Ribosomal protein L32e
1 1 1 0 SCOP 51430 NAD(P)-linked oxidoreductase
1 1 1 1 SCOP 56672 DNA/RNA polymerases
1 1 1 0 SCOP 54575 Ribosomal protein L31e
1 1 1 0 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
1 1 1 0 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 1 SCOP 56322 ADC synthase
1 1 1 0 SCOP 111278 SSo0622-like
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 55144 LigT-like
1 1 1 0 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 0 SCOP 57997 Tropomyosin
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 1 SCOP 47819 HRDC-like
1 1 1 0 SCOP 48662 Ribosomal protein L39e
1 1 1 0 SCOP 48208 Six-hairpin glycosidases
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 1 SCOP 103486 V-type ATP synthase subunit C
1 1 1 0 SCOP 143870 PF0523-like
1 1 1 1 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
1 1 1 1 SCOP 53056 beta-carbonic anhydrase, cab
1 1 1 1 SCOP 56529 FAH
1 1 1 0 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 0 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 0 SCOP 69618 HemD-like
1 1 1 1 SCOP 143447 AMMECR1-like
1 1 1 1 SCOP 52768 Arginase/deacetylase
1 1 1 1 SCOP 55909 Pentein
1 1 1 0 SCOP 52788 Phosphotyrosine protein phosphatases I
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 53800 Chelatase
1 1 1 1 SCOP 63965 Precorrin-8X methylmutase CbiC/CobH
1 1 1 0 SCOP 101960 Stabilizer of iron transporter SufD
1 1 1 0 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
1 1 1 1 SCOP 141734 HisI-like
1 1 1 1 SCOP 101478 ADP-ribosylglycohydrolase
1 1 1 1 SCOP 111038 YjbQ-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 81324 Voltage-gated potassium channels
1 1 1 1 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 0 SCOP 55331 Tautomerase/MIF
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 75712 Rad50 coiled-coil Zn hook
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 0 SCOP 51230 Single hybrid motif
1 1 1 1 SCOP 51679 Bacterial luciferase-like
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 49503 Cupredoxins
1 1 1 0 SCOP 101744 Rof/RNase P subunit-like
1 1 1 0 SCOP 55797 PR-1-like
1 1 1 1 SCOP 89733 L-sulfolactate dehydrogenase-like
1 1 1 0 SCOP 50118 Cell growth inhibitor/plasmid maintenance toxic component
1 1 1 1 SCOP 64167 SurE-like
1 1 1 0 SCOP 117782 YbjQ-like
1 1 1 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 102215 Creatininase
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 116842 XseB-like
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 1 SCOP 117856 AF0104/ALDC/Ptd012-like
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
1 1 1 0 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 1 1 SCOP 69065 RNase III domain-like
1 1 1 1 SCOP 56219 DNase I-like
1 1 1 0 SCOP 54975 Acylphosphatase/BLUF domain-like
1 1 1 0 SCOP 158997 Trm112p-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 0 SCOP 51004 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 101307 YutG-like
1 1 1 0 SCOP 159664 CobE/GbiG C-terminal domain-like
1 1 1 0 SCOP 56747 Prim-pol domain
1 1 1 0 SCOP 52335 Methylglyoxal synthase-like
1 1 1 0 SCOP 140931 Fic-like
1 1 1 0 SCOP 143631 ApbE-like
1 1 1 1 SCOP 117457 FumA C-terminal domain-like
1 1 1 1 SCOP 161070 SNF-like
1 1 1 0 SCOP 75138 HprK N-terminal domain-like
1 1 1 1 SCOP 64288 Chorismate lyase-like
1 1 1 0 SCOP 52242 Cobalamin (vitamin B12)-binding domain
1 1 1 1 SCOP 142338 CofD-like
1 1 1 1 SCOP 51219 TRAP-like
1 1 1 0 SCOP 69786 YggU-like
1 1 1 0 SCOP 103196 Roadblock/LC7 domain
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 56024 Phospholipase D/nuclease
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 1 SCOP 56271 Pyruvoyl-dependent histidine and arginine decarboxylases
1 1 1 1 SCOP 52738 Methylesterase CheB, C-terminal domain
1 1 1 0 SCOP 89562 RraA-like
1 1 1 1 SCOP 56726 DNA topoisomerase IV, alpha subunit
1 1 1 0 SCOP 159672 CbiG N-terminal domain-like
1 1 1 1 SCOP 102198 Putative cyclase
1 1 1 1 SCOP 82704 AlbA-like
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 0 SCOP 74784 Translin
1 1 1 1 SCOP 89124 Nop domain
1 1 1 1 SCOP 111321 AF1104-like
1 1 1 1 SCOP 142535 AF0625-like
1 1 1 0 SCOP 143560 MK0786-like
1 1 1 1 SCOP 111249 Sulfolobus fructose-1,6-bisphosphatase-like
1 1 1 1 SCOP 158436 Ta0600-like
1 1 1 1 SCOP 160975 AF1531-like
1 1 1 0 SCOP 160350 Rnp2-like
1 1 1 0 SCOP 49367 Superoxide reductase-like
1 1 1 0 SCOP 54984 eEF-1beta-like
1 1 1 0 SCOP 55186 ThrRS/AlaRS common domain
1 1 1 1 SCOP 69819 MTH1598-like
1 1 1 0 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 0 SCOP 116820 Rps17e-like
1 1 1 0 SCOP 160374 RplX-like
1 1 1 1 SCOP 102462 Peptidyl-tRNA hydrolase II
1 1 1 0 SCOP 158372 AF1782-like
1 1 1 1 SCOP 69695 SRP19
1 1 1 1 SCOP 160363 MTH889-like
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 0 SCOP 50199 Staphylococcal nuclease
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1 1 1 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
1 1 1 1 SCOP 158832 Tex N-terminal region-like
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 50156 PDZ domain-like
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 1 SCOP 142823 ComB-like
1 1 1 0 SCOP 159713 Dhaf3308-like
1 1 1 1 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 102645 CoaB-like
1 1 1 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
1 1 1 1 SCOP 102110 (2r)-phospho-3-sulfolactate synthase ComA
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 1 SCOP 102324 F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
1 1 1 0 SCOP 111342 CbiD-like
1 1 1 1 SCOP 56199 Methenyltetrahydromethanopterin cyclohydrolase
1 1 1 0 SCOP 51971 Nucleotide-binding domain
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 141066 ICP-like
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 1 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 143968 UbiD C-terminal domain-like
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 89915 DNA-binding protein Tfx
1 1 1 0 SCOP 69025 Hypothetical protein MTH865
1 1 1 1 SCOP 75181 Hypothetical protein MTH777 (MT0777)
1 1 1 0 SCOP 53623 MurD-like peptide ligases, catalytic domain
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 47979 Iron-dependent repressor protein, dimerization domain
1 1 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 0 SCOP 57825 Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
1 1 1 0 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 0 SCOP 63380 Riboflavin synthase domain-like
1 1 1 0 SCOP 141322 NfeD domain-like
1 1 1 0 SCOP 48310 Aldehyde ferredoxin oxidoreductase, C-terminal domains
1 1 1 0 SCOP 51101 Mannose-binding lectins
1 1 1 0 SCOP 49354 PapD-like
1 1 1 0 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 1 SCOP 75569 Archaeal IMP cyclohydrolase PurO
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
1 1 1 1 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
1 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
1 1 1 1 SCOP 158702 Sec63 N-terminal domain-like
1 1 1 0 SCOP 101332 Hypothetical protein MTH393
1 1 1 0 SCOP 75412 Hypothetical protein MTH1880
1 1 1 0 SCOP 103460 Sec-beta subunit
1 1 1 0 SCOP 117892 Band 7/SPFH domain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 54680 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 1 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 116742 eIF2alpha middle domain-like
1 1 1 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 0 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 1 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 1 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 47757 Chemotaxis receptor methyltransferase CheR, N-terminal domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 1 SCOP 75553 Smc hinge domain
1 1 1 0 SCOP 56228 Aldehyde ferredoxin oxidoreductase, N-terminal domain
1 1 1 0 SCOP 75615 Siroheme synthase middle domains-like
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 1 SCOP 89000 post-HMGL domain-like
1 1 1 1 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 54585 Cdc48 domain 2-like
1 1 1 1 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 47644 Methionine synthase domain
1 1 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 0 SCOP 54893 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
1 1 1 1 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 141300 GatD N-terminal domain-like
1 1 1 0 SCOP 140914 PriB N-terminal domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 0 SCOP 55267 tRNA-intron endonuclease N-terminal domain-like
1 1 1 0 SCOP 52913 RNA 3'-terminal phosphate cyclase, RPTC, insert domain
1 1 1 0 SCOP 159071 TrmB C-terminal domain-like

Jump to [ Top of page · Assignment statistics ]


The following superfamilies have one or more weak hits:

SCOP superfamily ABC transporter transmembrane region
SCOP superfamily Neurotransmitter-gated ion-channel transmembrane pore
SCOP superfamily Prokaryotic lipoproteins and lipoprotein localization factors
SCOP superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors
SCOP superfamily Zn-finger domain of Sec23/24
SCOP superfamily PurS-like
SCOP superfamily N-utilization substance G protein NusG, N-terminal domain
SCOP superfamily Swiveling domain of dehydratase reactivase alpha subunit
SCOP superfamily HCP-like
SCOP superfamily Nucleotidyltransferase substrate binding subunit/domain
SCOP superfamily F1F0 ATP synthase subunit B, membrane domain
SCOP superfamily Cytochrome c oxidase subunit III-like
SCOP superfamily Transmembrane di-heme cytochromes
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily V-region of surface antigen I/II (SA I/II, PAC)
SCOP superfamily Integrin domains
SCOP superfamily FAT domain of focal adhesion kinase
SCOP superfamily Bacterial hemolysins
SCOP superfamily Clostridium neurotoxins, "coiled-coil" domain
SCOP superfamily FYVE/PHD zinc finger
SCOP superfamily Ada DNA repair protein, N-terminal domain (N-Ada 10)
SCOP superfamily RING/U-box
SCOP superfamily beta-beta-alpha zinc fingers
SCOP superfamily Anthrax protective antigen
SCOP superfamily Aerolisin/ETX pore-forming domain
SCOP superfamily Type II DNA topoisomerase
SCOP superfamily gp120 core
SCOP superfamily PheT/TilS domain
SCOP superfamily SCP-like
SCOP superfamily RuBisCO, small subunit
SCOP superfamily TRADD, N-terminal domain
SCOP superfamily RNA-binding domain, RBD
SCOP superfamily YcfA/nrd intein domain
SCOP superfamily UBC-like
SCOP superfamily ssDNA-binding transcriptional regulator domain
SCOP superfamily Periplasmic binding protein-like I
SCOP superfamily vWA-like
SCOP superfamily LigB-like
SCOP superfamily Methylated DNA-protein cysteine methyltransferase domain
SCOP superfamily Cryptochrome/photolyase, N-terminal domain
SCOP superfamily PLC-like phosphodiesterases
SCOP superfamily Cyanovirin-N
SCOP superfamily Hedgehog/intein (Hint) domain
SCOP superfamily Lipocalins
SCOP superfamily PH domain-like
SCOP superfamily GroES-like
SCOP superfamily Concanavalin A-like lectins/glucanases
SCOP superfamily Starch-binding domain-like
SCOP superfamily Carbohydrate-binding domain
SCOP superfamily Invasin/intimin cell-adhesion fragments
SCOP superfamily Cadherin-like
SCOP superfamily Multiheme cytochromes
SCOP superfamily R1 subunit of ribonucleotide reductase, N-terminal domain
SCOP superfamily ERP29 C domain-like
SCOP superfamily Saposin
SCOP superfamily Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
SCOP superfamily EF-hand
SCOP superfamily Bromodomain
SCOP superfamily Fertilization protein
SCOP superfamily C-terminal effector domain of the bipartite response regulators
SCOP superfamily tRNA-binding arm
SCOP superfamily HR1 repeat
SCOP superfamily YfgJ-like
SCOP superfamily MgtE membrane domain-like
SCOP superfamily NE1680-like
SCOP superfamily BT0923-like
SCOP superfamily FlaG-like
SCOP superfamily PriA/YqbF domain
SCOP superfamily PrpR receptor domain-like
SCOP superfamily YopX-like
SCOP superfamily HIT/MYND zinc finger-like
SCOP superfamily NOB1 zinc finger-like
SCOP superfamily Rhomboid-like
SCOP superfamily Peptidoglycan deacetylase N-terminal noncatalytic region
SCOP superfamily L,D-transpeptidase pre-catalytic domain-like
SCOP superfamily RelE-like
SCOP superfamily MAL13P1.257-like
SCOP superfamily TROVE domain-like
SCOP superfamily Mediator hinge subcomplex-like
SCOP superfamily Hyaluronidase post-catalytic domain-like
SCOP superfamily LemA-like
SCOP superfamily ISY1 domain-like
SCOP superfamily Vacuolar ATP synthase subunit C
SCOP superfamily Hypothetical protein MPN330
SCOP superfamily Hypothetical protein YqbG
SCOP superfamily Resistin
SCOP superfamily Rap/Ran-GAP
SCOP superfamily Indigoidine synthase A-like
SCOP superfamily Toprim domain
SCOP superfamily VPS9 domain
SCOP superfamily Surp module (SWAP domain)
SCOP superfamily Formin homology 2 domain (FH2 domain)
SCOP superfamily Typo IV secretion system protein TraC

Jump to [ Top of page · Assignment statistics ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.