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  Home > Genomes > Superfamily assignments for Nocardia farcinica IFM 10152


Nocardia farcinica IFM 10152 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Terrabacteria group; Actinobacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia; Nocardia farcinica; Nocardia farcinica IFM 10152

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 5934 total
3915 (66 %) with assignment
318 average length
62 % amino acid coverage
Domains: 5616 total
708 unique superfamilies
516 unique families
299 average length
7.9 average superfamily size
87 % formed by duplication
Domain combinations: 492 domain pairs
1243 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
333 289 80 9 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
218 213 36 7 SCOP 51735 NAD(P)-binding Rossmann-fold domains
215 198 20 0 SCOP 46689 Homeodomain-like
175 172 29 1 SCOP 46785 "Winged helix" DNA-binding domain
141 141 17 7 SCOP 53474 alpha/beta-Hydrolases
133 26 19 3 SCOP 52777 CoA-dependent acyltransferases
124 109 24 4 SCOP 51905 FAD/NAD(P)-binding domain
102 61 19 1 SCOP 56801 Acetyl-CoA synthetase-like
89 84 5 0 SCOP 103473 MFS general substrate transporter
88 88 5 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
77 77 13 5 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
64 62 7 1 SCOP 56645 Acyl-CoA dehydrogenase NM domain-like
63 21 21 1 SCOP 47336 ACP-like
63 60 6 1 SCOP 47203 Acyl-CoA dehydrogenase C-terminal domain-like
62 61 10 0 SCOP 47413 lambda repressor-like DNA-binding domains
56 56 9 1 SCOP 53850 Periplasmic binding protein-like II
56 35 10 2 SCOP 53901 Thiolase-like
55 43 8 4 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
50 45 5 3 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
48 40 7 3 SCOP 52096 ClpP/crotonase
48 48 7 1 SCOP 54427 NTF2-like
46 46 18 3 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
45 40 24 2 SCOP 50249 Nucleic acid-binding proteins
44 44 7 1 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
43 42 6 5 SCOP 53383 PLP-dependent transferases
41 40 7 0 SCOP 55961 Bet v1-like
41 41 13 1 SCOP 46894 C-terminal effector domain of the bipartite response regulators
40 40 8 2 SCOP 56112 Protein kinase-like (PK-like)
39 33 5 2 SCOP 50129 GroES-like
39 32 6 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
38 38 10 1 SCOP 52172 CheY-like
37 37 3 2 SCOP 51679 Bacterial luciferase-like
36 36 3 2 SCOP 50475 FMN-binding split barrel
36 34 6 1 SCOP 54909 Dimeric alpha+beta barrel
34 20 11 6 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
32 30 3 1 SCOP 161098 MetI-like
32 32 6 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
31 31 8 2 SCOP 52833 Thioredoxin-like
31 20 7 4 SCOP 53067 Actin-like ATPase domain
31 30 11 1 SCOP 55781 GAF domain-like
31 29 11 0 SCOP 46955 Putative DNA-binding domain
30 30 9 2 SCOP 56784 HAD-like
27 27 8 1 SCOP 56601 beta-lactamase/transpeptidase-like
27 27 2 1 SCOP 48264 Cytochrome P450
26 26 3 2 SCOP 53720 ALDH-like
26 26 5 0 SCOP 140453 EsxAB dimer-like
25 25 5 2 SCOP 53448 Nucleotide-diphospho-sugar transferases
25 25 8 2 SCOP 52317 Class I glutamine amidotransferase-like
25 21 10 5 SCOP 52402 Adenine nucleotide alpha hydrolases-like
25 25 5 4 SCOP 51182 RmlC-like cupins
24 24 2 2 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
23 23 8 3 SCOP 53098 Ribonuclease H-like
22 20 13 6 SCOP 54211 Ribosomal protein S5 domain 2-like
22 22 5 1 SCOP 55811 Nudix
22 21 7 1 SCOP 63380 Riboflavin synthase domain-like
21 18 13 1 SCOP 48452 TPR-like
20 20 7 1 SCOP 56281 Metallo-hydrolase/oxidoreductase
20 20 6 1 SCOP 56349 DNA breaking-rejoining enzymes
20 19 3 1 SCOP 90123 ABC transporter transmembrane region
20 11 4 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
18 18 11 3 SCOP 52374 Nucleotidylyl transferase
18 18 6 0 SCOP 54292 2Fe-2S ferredoxin-like
18 17 4 4 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
18 18 5 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
17 17 8 6 SCOP 51569 Aldolase
16 16 5 0 SCOP 109854 DinB/YfiT-like putative metalloenzymes
16 16 9 2 SCOP 53955 Lysozyme-like
16 10 4 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
15 15 6 7 SCOP 51556 Metallo-dependent hydrolases
15 14 11 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
15 15 6 4 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
15 14 4 3 SCOP 102114 Radical SAM enzymes
15 14 10 2 SCOP 50447 Translation proteins
15 12 12 0 SCOP 55021 ACT-like
15 15 6 0 SCOP 56176 FAD-binding/transporter-associated domain-like
14 14 4 1 SCOP 56300 Metallo-dependent phosphatases
14 14 3 1 SCOP 53597 Dihydrofolate reductase-like
14 14 2 2 SCOP 47240 Ferritin-like
14 14 6 1 SCOP 52980 Restriction endonuclease-like
14 14 10 2 SCOP 55681 Class II aaRS and biotin synthetases
14 14 6 1 SCOP 51395 FMN-linked oxidoreductases
14 14 6 4 SCOP 51445 (Trans)glycosidases
14 14 8 1 SCOP 54631 CBS-domain pair
14 11 9 0 SCOP 55785 PYP-like sensor domain (PAS domain)
13 13 4 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
13 13 4 3 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
12 12 5 2 SCOP 53271 PRTase-like
12 12 2 0 SCOP 52218 Flavoproteins
12 12 6 1 SCOP 54862 4Fe-4S ferredoxins
12 12 4 1 SCOP 53254 Phosphoglycerate mutase-like
12 12 5 1 SCOP 53187 Zn-dependent exopeptidases
12 12 9 0 SCOP 55073 Nucleotide cyclase
12 12 4 0 SCOP 54373 FAD-linked reductases, C-terminal domain
12 4 2 0 SCOP 53738 Phosphoglucomutase, first 3 domains
11 11 4 2 SCOP 53613 Ribokinase-like
11 8 4 1 SCOP 52821 Rhodanese/Cell cycle control phosphatase
11 11 4 5 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
11 11 6 3 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
11 11 5 1 SCOP 54001 Cysteine proteinases
11 11 6 1 SCOP 48208 Six-hairpin glycosidases
11 11 6 0 SCOP 50022 ISP domain
11 6 5 0 SCOP 49503 Cupredoxins
11 10 8 1 SCOP 81301 Nucleotidyltransferase
11 11 1 0 SCOP 48008 GntR ligand-binding domain-like
11 11 5 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
11 8 7 2 SCOP 51971 Nucleotide-binding domain
11 10 7 1 SCOP 52440 PreATP-grasp domain
10 10 3 3 SCOP 100950 NagB/RpiA/CoA transferase-like
10 10 5 2 SCOP 75217 alpha/beta knot
10 10 5 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
10 9 5 1 SCOP 55469 FMN-dependent nitroreductase-like
10 10 1 1 SCOP 51197 Clavaminate synthase-like
10 10 4 1 SCOP 56529 FAH
10 9 8 1 SCOP 52151 FabD/lysophospholipase-like
10 10 2 1 SCOP 69118 AhpD-like
10 9 6 1 SCOP 51230 Single hybrid motif
10 10 5 0 SCOP 53300 vWA-like
10 10 4 1 SCOP 53822 Periplasmic binding protein-like I
10 10 3 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
9 9 3 2 SCOP 53927 Cytidine deaminase-like
9 9 3 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
9 9 4 1 SCOP 50494 Trypsin-like serine proteases
9 9 4 4 SCOP 52467 DHS-like NAD/FAD-binding domain
9 8 5 0 SCOP 49879 SMAD/FHA domain
9 7 5 1 SCOP 51338 Composite domain of metallo-dependent hydrolases
9 5 3 1 SCOP 54980 EF-G C-terminal domain-like
8 7 6 1 SCOP 53790 Tetrapyrrole methylase
8 8 2 1 SCOP 75304 Amidase signature (AS) enzymes
8 8 1 5 SCOP 51366 Ribulose-phoshate binding barrel
8 6 4 1 SCOP 51161 Trimeric LpxA-like enzymes
8 7 4 0 SCOP 48576 Terpenoid synthases
8 8 5 1 SCOP 51419 PLP-binding barrel
8 6 5 1 SCOP 49785 Galactose-binding domain-like
8 8 2 0 SCOP 52091 SpoIIaa-like
8 8 1 1 SCOP 53807 "Helical backbone" metal receptor
8 7 7 0 SCOP 47781 RuvA domain 2-like
8 8 2 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
8 3 2 0 SCOP 55979 DNA clamp
8 8 2 0 SCOP 81665 Calcium ATPase, transmembrane domain M
8 8 2 0 SCOP 81653 Calcium ATPase, transduction domain A
7 7 5 1 SCOP 81606 PP2C-like
7 7 3 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
7 7 3 0 SCOP 51261 Duplicated hybrid motif
7 7 2 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
7 7 6 0 SCOP 81296 E set domains
7 6 4 2 SCOP 50891 Cyclophilin-like
7 7 2 3 SCOP 88713 Glycoside hydrolase/deacetylase
7 7 2 1 SCOP 52266 SGNH hydrolase
7 7 3 0 SCOP 52788 Phosphotyrosine protein phosphatases I
7 7 3 3 SCOP 55931 Glutamine synthetase/guanido kinase
7 7 7 2 SCOP 50692 ADC-like
7 7 2 1 SCOP 64288 Chorismate lyase-like
7 7 1 0 SCOP 103196 Roadblock/LC7 domain
7 7 6 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
7 7 4 1 SCOP 51246 Rudiment single hybrid motif
7 6 5 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
7 7 4 2 SCOP 52922 TK C-terminal domain-like
7 7 4 0 SCOP 158472 HAMP domain-like
7 7 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
6 5 2 0 SCOP 54197 HIT-like
6 6 2 1 SCOP 46946 S13-like H2TH domain
6 6 4 3 SCOP 55120 Pseudouridine synthase
6 6 4 1 SCOP 55174 Alpha-L RNA-binding motif
6 6 4 2 SCOP 48150 DNA-glycosylase
6 6 1 1 SCOP 56655 Carbohydrate phosphatase
6 6 5 1 SCOP 109604 HD-domain/PDEase-like
6 6 2 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
6 6 4 1 SCOP 88723 PIN domain-like
6 6 3 0 SCOP 161111 Cation efflux protein transmembrane domain-like
6 5 2 1 SCOP 89796 CoA-transferase family III (CaiB/BaiF)
6 6 2 0 SCOP 55136 Probable bacterial effector-binding domain
6 6 5 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
6 6 2 2 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
6 6 5 2 SCOP 53623 MurD-like peptide ligases, catalytic domain
6 6 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
6 6 3 1 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
6 6 6 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
6 6 4 0 SCOP 89000 post-HMGL domain-like
5 5 2 2 SCOP 52141 Uracil-DNA glycosylase-like
5 5 4 2 SCOP 50104 Translation proteins SH3-like domain
5 5 2 1 SCOP 55920 Creatinase/aminopeptidase
5 5 1 0 SCOP 51658 Xylose isomerase-like
5 5 1 0 SCOP 55298 YjgF-like
5 5 3 0 SCOP 48371 ARM repeat
5 5 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
5 5 4 2 SCOP 56672 DNA/RNA polymerases
5 4 2 2 SCOP 51726 UROD/MetE-like
5 5 3 0 SCOP 56317 Carbon-nitrogen hydrolase
5 5 3 0 SCOP 55008 HMA, heavy metal-associated domain
5 4 2 3 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
5 5 3 0 SCOP 52954 Class II aaRS ABD-related
5 5 3 1 SCOP 102405 MCP/YpsA-like
5 5 3 1 SCOP 52016 LeuD/IlvD-like
5 5 4 0 SCOP 53218 Molybdenum cofactor biosynthesis proteins
5 5 4 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
5 4 4 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
5 5 4 1 SCOP 52242 Cobalamin (vitamin B12)-binding domain
5 5 2 1 SCOP 51219 TRAP-like
5 5 2 0 SCOP 50331 MOP-like
5 5 2 2 SCOP 51604 Enolase C-terminal domain-like
5 5 4 1 SCOP 46548 alpha-helical ferredoxin
5 5 2 0 SCOP 141523 L,D-transpeptidase catalytic domain-like
5 5 4 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
5 5 4 0 SCOP 50156 PDZ domain-like
5 4 4 0 SCOP 81923 Double Clp-N motif
5 5 2 2 SCOP 50621 Alanine racemase C-terminal domain-like
5 5 3 0 SCOP 47823 lambda integrase-like, N-terminal domain
5 5 3 0 SCOP 140459 PE/PPE dimer-like
5 3 3 1 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
4 4 3 1 SCOP 56731 DNA primase core
4 4 1 0 SCOP 57829 Zn-binding ribosomal proteins
4 4 3 3 SCOP 53697 SIS domain
4 4 2 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
4 4 2 0 SCOP 82607 YbaB-like
4 4 1 0 SCOP 143800 L28p-like
4 4 2 2 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
4 4 1 1 SCOP 82784 OsmC-like
4 4 3 2 SCOP 53633 Carbamate kinase-like
4 4 1 2 SCOP 48557 L-aspartase-like
4 4 2 2 SCOP 56796 Dehydroquinate synthase-like
4 4 2 0 SCOP 55315 L30e-like
4 4 4 0 SCOP 54534 FKBP-like
4 4 2 1 SCOP 56322 ADC synthase
4 3 2 1 SCOP 54506 Diaminopimelate epimerase-like
4 4 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
4 4 3 0 SCOP 53639 AraD/HMP-PK domain-like
4 4 3 3 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
4 4 2 1 SCOP 46458 Globin-like
4 4 3 0 SCOP 81324 Voltage-gated potassium channels
4 4 3 1 SCOP 51717 Dihydropteroate synthetase-like
4 4 4 0 SCOP 55718 SCP-like
4 4 2 0 SCOP 47598 Ribbon-helix-helix
4 4 3 0 SCOP 89550 PHP domain-like
4 4 2 1 SCOP 56219 DNase I-like
4 4 2 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
4 4 4 0 SCOP 88697 PUA domain-like
4 4 1 1 SCOP 102588 LmbE-like
4 4 4 1 SCOP 53041 Resolvase-like
4 4 2 0 SCOP 55846 N-acetylmuramoyl-L-alanine amidase-like
4 4 2 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
4 4 3 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
4 3 3 1 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
4 4 2 1 SCOP 48019 post-AAA+ oligomerization domain-like
4 3 3 1 SCOP 52210 Succinyl-CoA synthetase domains
4 4 2 0 SCOP 116726 TrkA C-terminal domain-like
4 4 1 1 SCOP 54826 Enolase N-terminal domain-like
4 3 2 1 SCOP 56042 PurM C-terminal domain-like
4 3 2 1 SCOP 55326 PurM N-terminal domain-like
4 4 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
4 4 1 0 SCOP 81624 N-terminal domain of MutM-like DNA repair proteins
4 4 2 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
4 2 2 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
3 3 2 1 SCOP 53167 Purine and uridine phosphorylases
3 3 1 1 SCOP 56420 Peptide deformylase
3 3 2 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
3 3 1 0 SCOP 54285 MoaD/ThiS
3 3 1 0 SCOP 63829 Calcium-dependent phosphotriesterase
3 3 2 1 SCOP 48613 Heme oxygenase-like
3 3 3 1 SCOP 56634 Heme-dependent catalase-like
3 3 3 1 SCOP 53328 Formyltransferase
3 3 2 0 SCOP 51306 LexA/Signal peptidase
3 3 3 0 SCOP 47819 HRDC-like
3 3 2 0 SCOP 53056 beta-carbonic anhydrase, cab
3 3 2 2 SCOP 52768 Arginase/deacetylase
3 3 1 1 SCOP 53800 Chelatase
3 3 2 0 SCOP 50090 Electron transport accessory proteins
3 3 2 0 SCOP 55331 Tautomerase/MIF
3 3 1 1 SCOP 56209 Nitrile hydratase alpha chain
3 3 3 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
3 3 2 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
3 3 2 1 SCOP 54913 GlnB-like
3 3 2 1 SCOP 55826 YbaK/ProRS associated domain
3 3 2 1 SCOP 50814 Lipocalins
3 3 2 1 SCOP 51703 Cobalamin (vitamin B12)-dependent enzymes
3 2 2 0 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
3 3 2 0 SCOP 142906 YjbR-like
3 3 2 0 SCOP 109709 KorB DNA-binding domain-like
3 3 1 0 SCOP 102198 Putative cyclase
3 3 3 0 SCOP 50346 PRC-barrel domain
3 3 1 1 SCOP 52743 Subtilisin-like
3 3 2 1 SCOP 48024 N-terminal domain of DnaB helicase
3 3 2 0 SCOP 46589 tRNA-binding arm
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 3 1 0 SCOP 51215 Regulatory protein AraC
3 3 3 0 SCOP 51294 Hedgehog/intein (Hint) domain
3 3 2 0 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
3 3 3 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
3 3 2 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
3 3 2 1 SCOP 63882 MoeA N-terminal region -like
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
3 3 1 1 SCOP 54368 Glutamine synthetase, N-terminal domain
3 2 2 1 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 1 SCOP 48013 NusB-like
2 2 1 0 SCOP 46911 Ribosomal protein S18
2 2 1 0 SCOP 142433 CinA-like
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 0 SCOP 56214 4'-phosphopantetheinyl transferase
2 2 1 1 SCOP 75620 Release factor
2 2 1 0 SCOP 109755 PhoU-like
2 2 2 1 SCOP 51730 FAD-linked oxidoreductase
2 2 2 1 SCOP 55821 YrdC/RibB
2 2 2 0 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 1 1 SCOP 51283 dUTPase-like
2 2 2 1 SCOP 64005 Undecaprenyl diphosphate synthase
2 2 2 1 SCOP 142695 RibA-like
2 2 1 1 SCOP 55205 EPT/RTPC-like
2 2 1 1 SCOP 52121 Lumazine synthase
2 2 2 0 SCOP 50182 Sm-like ribonucleoproteins
2 2 2 1 SCOP 52949 Macro domain-like
2 2 1 1 SCOP 48256 Citrate synthase
2 2 2 1 SCOP 52799 (Phosphotyrosine protein) phosphatases II
2 2 1 1 SCOP 53590 Nucleoside hydrolase
2 1 1 0 SCOP 46626 Cytochrome c
2 2 1 1 SCOP 52499 Isochorismatase-like hydrolases
2 2 1 0 SCOP 55248 PCD-like
2 2 2 1 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
2 2 2 0 SCOP 74650 Galactose mutarotase-like
2 2 1 1 SCOP 52972 ITPase-like
2 2 1 0 SCOP 110849 ParB/Sulfiredoxin
2 1 1 1 SCOP 48113 Heme-dependent peroxidases
2 2 1 0 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
2 2 2 0 SCOP 69618 HemD-like
2 2 1 1 SCOP 55909 Pentein
2 2 1 1 SCOP 81442 Cytochrome c oxidase subunit I-like
2 2 1 0 SCOP 101960 Stabilizer of iron transporter SufD
2 2 2 0 SCOP 144091 Rhomboid-like
2 2 2 0 SCOP 141868 EAL domain-like
2 2 2 0 SCOP 102712 JAB1/MPN domain
2 2 1 1 SCOP 111352 Ammonium transporter
2 2 1 1 SCOP 56266 DmpA/ArgJ-like
2 2 1 1 SCOP 49482 Aromatic compound dioxygenase
2 2 2 0 SCOP 82771 GIY-YIG endonuclease
2 2 2 0 SCOP 55166 Hedgehog/DD-peptidase
2 2 2 0 SCOP 50118 Cell growth inhibitor/plasmid maintenance toxic component
2 2 1 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
2 2 2 0 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 2 0 SCOP 51206 cAMP-binding domain-like
2 2 2 0 SCOP 54736 ClpS-like
2 2 2 0 SCOP 50800 PK beta-barrel domain-like
2 2 2 1 SCOP 53732 Aconitase iron-sulfur domain
2 1 1 0 SCOP 116734 DNA methylase specificity domain
2 2 1 0 SCOP 50993 Peptidase/esterase 'gauge' domain
2 2 1 0 SCOP 117396 TM1631-like
2 2 1 0 SCOP 160935 VPA0735-like
2 2 1 1 SCOP 53213 LigB-like
2 2 2 0 SCOP 89095 GatB/YqeY motif
2 2 2 1 SCOP 103025 Folate-binding domain
2 2 2 1 SCOP 101386 all-alpha NTP pyrophosphatases
2 2 2 1 SCOP 52335 Methylglyoxal synthase-like
2 1 1 1 SCOP 63411 LuxS/MPP-like metallohydrolase
2 2 2 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
2 2 1 0 SCOP 57802 Rubredoxin-like
2 2 1 1 SCOP 50037 C-terminal domain of transcriptional repressors
2 2 1 1 SCOP 110738 Glycerate kinase I
2 2 2 1 SCOP 142338 CofD-like
2 2 2 0 SCOP 50486 FMT C-terminal domain-like
2 2 1 1 SCOP 101874 YceI-like
2 2 1 1 SCOP 159659 Cgl1923-like
2 1 1 0 SCOP 89963 YajQ-like
2 1 1 1 SCOP 56024 Phospholipase D/nuclease
2 2 1 1 SCOP 103247 TT1751-like
2 2 1 0 SCOP 160904 Jann2411-like
2 2 2 1 SCOP 89562 RraA-like
2 2 2 0 SCOP 158791 MgtE N-terminal domain-like
2 2 2 0 SCOP 46565 Chaperone J-domain
2 2 1 0 SCOP 160582 MbtH-like
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 1 0 SCOP 63867 MoeA C-terminal domain-like
2 2 1 1 SCOP 56563 Major capsid protein gp5
2 2 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
2 2 2 1 SCOP 143865 CorA soluble domain-like
2 2 1 1 SCOP 48592 GroEL equatorial domain-like
2 2 2 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
2 2 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
2 2 1 0 SCOP 159275 PA1994-like
2 2 2 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
2 2 2 0 SCOP 101898 NHL repeat
2 2 2 0 SCOP 55608 Homing endonucleases
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 2 2 0 SCOP 160387 NosL/MerB-like
2 1 1 0 SCOP 53681 Aspartate/glutamate racemase
2 2 2 1 SCOP 56436 C-type lectin-like
2 2 2 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
2 1 1 0 SCOP 47090 PGBD-like
2 2 2 0 SCOP 51011 Glycosyl hydrolase domain
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 1 1 SCOP 52029 GroEL apical domain-like
2 2 1 1 SCOP 47979 Iron-dependent repressor protein, dimerization domain
2 2 1 0 SCOP 52279 Beta-D-glucan exohydrolase, C-terminal domain
2 2 2 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
2 2 2 0 SCOP 90002 Hypothetical protein YjiA, C-terminal domain
2 2 2 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
2 2 2 0 SCOP 63418 MurE/MurF N-terminal domain
2 2 2 1 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
2 2 1 0 SCOP 51984 MurCD N-terminal domain
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 2 2 0 SCOP 52113 BRCT domain
2 2 2 0 SCOP 141259 CarD-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 2 0 SCOP 117892 Band 7/SPFH domain
2 2 2 0 SCOP 89082 Antibiotic binding domain of TipA-like multidrug resistance regulators
2 2 1 1 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
2 1 1 0 SCOP 117987 CRISPR-associated protein
2 2 2 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
2 2 2 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 1 SCOP 81271 TGS-like
2 2 2 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 1 1 1 SCOP 54416 Amine oxidase N-terminal region
2 2 1 1 SCOP 54849 GroEL-intermediate domain like
2 2 2 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
2 2 2 0 SCOP 160467 PH0987 N-terminal domain-like
1 1 1 1 SCOP 81338 Aquaporin-like
1 1 1 0 SCOP 55594 HPr-like
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 64376 YlxR-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 64182 DHH phosphoesterases
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 1 SCOP 53784 Phosphofructokinase
1 1 1 0 SCOP 89447 AbrB/MazE/MraZ-like
1 1 1 1 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 0 SCOP 51695 PLC-like phosphodiesterases
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 0 SCOP 82549 DAK1/DegV-like
1 1 1 1 SCOP 75625 YebC-like
1 1 1 1 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 47729 IHF-like DNA-binding proteins
1 1 1 1 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
1 1 1 1 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 1 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 0 SCOP 51316 Mss4-like
1 1 1 1 SCOP 69765 IpsF-like
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 89360 HesB-like domain
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 56770 HydA/Nqo6-like
1 1 1 0 SCOP 56276 S-adenosylmethionine decarboxylase
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 1 SCOP 52304 Type II 3-dehydroquinate dehydratase
1 1 1 1 SCOP 81452 Cytochrome c oxidase subunit III-like
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 49764 HSP20-like chaperones
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 89957 MTH1187/YkoF-like
1 1 1 0 SCOP 143744 GlcG-like
1 1 1 0 SCOP 50978 WD40 repeat-like
1 1 1 1 SCOP 69500 DTD-like
1 1 1 0 SCOP 53649 Alkaline phosphatase-like
1 1 1 0 SCOP 48403 Ankyrin repeat
1 1 1 0 SCOP 57997 Tropomyosin
1 1 1 1 SCOP 51645 Malate synthase G
1 1 1 1 SCOP 49329 Cu,Zn superoxide dismutase-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 1 SCOP 82282 Homocysteine S-methyltransferase
1 1 1 1 SCOP 49777 PEBP-like
1 1 1 0 SCOP 55856 Cytochrome b5-like heme/steroid binding domain
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 0 SCOP 57850 RING/U-box
1 1 1 0 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 56399 ADP-ribosylation
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 63965 Precorrin-8X methylmutase CbiC/CobH
1 1 1 1 SCOP 141734 HisI-like
1 1 1 1 SCOP 81342 Transmembrane di-heme cytochromes
1 1 1 0 SCOP 101478 ADP-ribosylglycohydrolase
1 1 1 0 SCOP 111038 YjbQ-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 143243 Nqo5-like
1 1 1 0 SCOP 69635 Type III secretory system chaperone-like
1 1 1 1 SCOP 53795 PEP carboxykinase-like
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 1 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 0 SCOP 143120 YefM-like
1 1 1 0 SCOP 118196 YaeB-like
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 1 SCOP 142754 NadA-like
1 1 1 0 SCOP 57783 Zinc beta-ribbon
1 1 1 0 SCOP 82697 PurS-like
1 1 1 0 SCOP 56524 Oxidoreductase molybdopterin-binding domain
1 1 1 0 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 1 0 SCOP 103256 Hypothetical protein TM0160
1 1 1 0 SCOP 81901 HCP-like
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 102215 Creatininase
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 1 SCOP 56762 HydB/Nqo4-like
1 1 1 0 SCOP 116842 XseB-like
1 1 1 1 SCOP 110399 ThiG-like
1 1 1 0 SCOP 159501 EreA/ChaN-like
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 140663 TTHA0068-like
1 1 1 0 SCOP 159894 YgaC/TfoX-N like
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
1 1 1 0 SCOP 69047 Hypothetical protein YjbJ
1 1 1 1 SCOP 54111 Urease, gamma-subunit
1 1 1 1 SCOP 51278 Urease, beta-subunit
1 1 1 1 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 1 1 SCOP 69065 RNase III domain-like
1 1 1 1 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 143081 BB1717-like
1 1 1 0 SCOP 159245 AttH-like
1 1 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
1 1 1 1 SCOP 50952 Soluble quinoprotein glucose dehydrogenase
1 1 1 0 SCOP 141694 AF2212/PG0164-like
1 1 1 0 SCOP 54975 Acylphosphatase/BLUF domain-like
1 1 1 0 SCOP 103084 Holliday junction resolvase RusA
1 1 1 0 SCOP 158997 Trm112p-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 1 SCOP 143456 VC0467-like
1 1 1 1 SCOP 48173 Cryptochrome/photolyase FAD-binding domain
1 1 1 0 SCOP 52425 Cryptochrome/photolyase, N-terminal domain
1 1 1 1 SCOP 89028 Cobalamin adenosyltransferase-like
1 1 1 0 SCOP 51004 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
1 1 1 0 SCOP 81330 Gated mechanosensitive channel
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 89392 Prokaryotic lipoproteins and lipoprotein localization factors
1 1 1 0 SCOP 110087 DR1885-like metal-binding protein
1 1 1 0 SCOP 49472 Transthyretin (synonym: prealbumin)
1 1 1 0 SCOP 158694 UraD-Like
1 1 1 1 SCOP 118215 Proton glutamate symport protein
1 1 1 0 SCOP 159664 CobE/GbiG C-terminal domain-like
1 1 1 0 SCOP 56747 Prim-pol domain
1 1 1 0 SCOP 159888 YdhG-like
1 1 1 1 SCOP 159234 FomD-like
1 1 1 0 SCOP 55804 Phoshotransferase/anion transport protein
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 0 SCOP 140931 Fic-like
1 1 1 0 SCOP 101262 Methenyltetrahydrofolate cyclohydrolase-like
1 1 1 1 SCOP 144010 CofE-like
1 1 1 0 SCOP 117457 FumA C-terminal domain-like
1 1 1 0 SCOP 75138 HprK N-terminal domain-like
1 1 1 0 SCOP 56507 Methionine synthase activation domain-like
1 1 1 0 SCOP 101473 DhaL-like
1 1 1 1 SCOP 111326 Urocanase
1 1 1 0 SCOP 69786 YggU-like
1 1 1 0 SCOP 89155 TorD-like
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 1 SCOP 103501 Respiratory nitrate reductase 1 gamma chain
1 1 1 0 SCOP 160379 SP0830-like
1 1 1 0 SCOP 103007 Hypothetical protein TT1725
1 1 1 0 SCOP 160104 Acetoacetate decarboxylase-like
1 1 1 1 SCOP 56534 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
1 1 1 0 SCOP 100939 SPOC domain-like
1 1 1 0 SCOP 82171 DPP6 N-terminal domain-like
1 1 1 0 SCOP 53933 Microbial ribonucleases
1 1 1 0 SCOP 52038 Barstar-related
1 1 1 0 SCOP 143437 THUMP domain-like
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 0 SCOP 102462 Peptidyl-tRNA hydrolase II
1 1 1 0 SCOP 47616 GST C-terminal domain-like
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 1 SCOP 56003 Molybdenum cofactor-binding domain
1 1 1 1 SCOP 158832 Tex N-terminal region-like
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 52794 PTS system IIB component-like
1 1 1 1 SCOP 50729 PH domain-like
1 1 1 0 SCOP 160424 BH3703-like
1 1 1 0 SCOP 48619 Phospholipase A2, PLA2
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 63825 YWTD domain
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 0 SCOP 54106 LysM domain
1 1 1 0 SCOP 82185 Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
1 1 1 0 SCOP 103190 Sensory domain-like
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 140376 ChaB-like
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 0 SCOP 81995 beta-sandwich domain of Sec23/24
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 49464 Carboxypeptidase regulatory domain-like
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 49265 Fibronectin type III
1 1 1 0 SCOP 56959 Leukocidin-like
1 1 1 1 SCOP 68923 PEP carboxykinase N-terminal domain
1 1 1 1 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 69055 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
1 1 1 1 SCOP 56037 PheT/TilS domain
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 0 SCOP 81464 Cytochrome c oxidase subunit II-like, transmembrane region
1 1 1 1 SCOP 161093 MgtE membrane domain-like
1 1 1 1 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 0 SCOP 57884 Ada DNA repair protein, N-terminal domain (N-Ada 10)
1 1 1 0 SCOP 142984 Nqo1 middle domain-like
1 1 1 0 SCOP 51110 alpha-D-mannose-specific plant lectins
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
1 1 1 0 SCOP 54665 CO dehydrogenase molybdoprotein N-domain-like
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 57863 ArfGap/RecO-like zinc finger
1 1 1 1 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 0 SCOP 141322 NfeD domain-like
1 1 1 0 SCOP 55252 C-terminal domain of arginine repressor
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 46934 UBA-like
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 1 SCOP 49998 Amine oxidase catalytic domain
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 55945 TATA-box binding protein-like
1 1 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
1 1 1 0 SCOP 47831 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
1 1 1 0 SCOP 47741 CO dehydrogenase ISP C-domain like
1 1 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
1 1 1 0 SCOP 75420 YhbC-like, N-terminal domain
1 1 1 1 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 0 SCOP 54680 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 55904 Ornithine decarboxylase C-terminal domain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 82708 R3H domain
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 0 SCOP 57845 B-box zinc-binding domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 1 SCOP 143724 PHP14-like
1 1 1 0 SCOP 140864 TROVE domain-like
1 1 1 0 SCOP 88688 Families 57/38 glycoside transferase middle domain
1 1 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 0 SCOP 110942 HSP90 C-terminal domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 75553 Smc hinge domain
1 1 1 1 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 101790 Aminomethyltransferase beta-barrel domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 1 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 63433 Fumarylacetoacetate hydrolase, FAH, N-terminal domain
1 1 1 0 SCOP 47644 Methionine synthase domain
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 0 SCOP 54184 Penicillin-binding protein 2x (pbp-2x), c-terminal domain
1 1 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 1 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 140356 PPK N-terminal domain-like
1 1 1 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 0 SCOP 47802 DNA polymerase beta, N-terminal domain-like
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 82829 MesJ substrate recognition domain-like
1 1 1 0 SCOP 102741 Obg GTP-binding protein C-terminal domain
1 1 1 0 SCOP 111474 Coronavirus S2 glycoprotein
1 1 1 0 SCOP 55869 DNA topoisomerase I domain
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily Ran binding protein zinc finger-like
SCOP superfamily Hypothetical protein VC0424
SCOP superfamily L-sulfolactate dehydrogenase-like
SCOP superfamily Hypothetical protein TM1070
SCOP superfamily Cysteine-rich DNA binding domain, (DM domain)
SCOP superfamily GckA/TtuD-like
SCOP superfamily Swiveling domain of dehydratase reactivase alpha subunit
SCOP superfamily Tp47 lipoprotein, middle and C-terminal domains
SCOP superfamily Antigen MPT63/MPB63 (immunoprotective extracellular protein)
SCOP superfamily Helical domain of Sec23/24
SCOP superfamily Photosystem I subunits PsaA/PsaB
SCOP superfamily Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP superfamily Bacterial photosystem II reaction centre, L and M subunits
SCOP superfamily Bacterial aa3 type cytochrome c oxidase subunit IV
SCOP superfamily Mitochondrial cytochrome c oxidase subunit VIIb
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily Adenylylcyclase toxin (the edema factor)
SCOP superfamily Rad50 coiled-coil Zn hook
SCOP superfamily Monomethylamine methyltransferase MtmB
SCOP superfamily Arabinanase/levansucrase/invertase
SCOP superfamily YhbC-like, C-terminal domain
SCOP superfamily Variable surface antigen VlsE
SCOP superfamily Thymidylate synthase-complementing protein Thy1
SCOP superfamily Integrin alpha N-terminal domain
SCOP superfamily Phase 1 flagellin
SCOP superfamily DNA-binding domain of intron-encoded endonucleases
SCOP superfamily Head-to-tail joining protein W, gpW
SCOP superfamily RNA polymerase subunits
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain
SCOP superfamily Bacterial hemolysins
SCOP superfamily Variant surface glycoprotein (N-terminal domain)
SCOP superfamily Cysteine-rich domain
SCOP superfamily Casein kinase II beta subunit
SCOP superfamily TNF receptor-like
SCOP superfamily Methylamine dehydrogenase, L chain
SCOP superfamily Outer membrane efflux proteins (OEP)
SCOP superfamily Porins
SCOP superfamily delta-Endotoxin (insectocide), N-terminal domain
SCOP superfamily Colicin
SCOP superfamily Replication terminator protein (Tus)
SCOP superfamily Aldehyde ferredoxin oxidoreductase, N-terminal domain
SCOP superfamily Monooxygenase (hydroxylase) regulatory protein
SCOP superfamily Sporulation response regulatory protein Spo0B
SCOP superfamily PR-1-like
SCOP superfamily Origin of replication-binding domain, RBD-like
SCOP superfamily CO dehydrogenase flavoprotein C-terminal domain-like
SCOP superfamily Protease propeptides/inhibitors
SCOP superfamily Alpha-lytic protease prodomain
SCOP superfamily Cdc48 domain 2-like
SCOP superfamily His-Me finger endonucleases
SCOP superfamily Methylated DNA-protein cysteine methyltransferase domain
SCOP superfamily Nitrogenase accessory factor-like
SCOP superfamily B12-dependent dehydatase associated subunit
SCOP superfamily AFP III-like domain
SCOP superfamily Nitrous oxide reductase, N-terminal domain
SCOP superfamily Thermostable phytase (3-phytase)
SCOP superfamily Sialidases
SCOP superfamily Herpes virus serine proteinase, assemblin
SCOP superfamily mu transposase, C-terminal domain
SCOP superfamily Osmotin, thaumatin-like protein
SCOP superfamily PHL pollen allergen
SCOP superfamily Starch-binding domain-like
SCOP superfamily Invasin/intimin cell-adhesion fragments
SCOP superfamily Cadherin-like
SCOP superfamily Immunoglobulin
SCOP superfamily Multiheme cytochromes
SCOP superfamily Bacterial muramidases
SCOP superfamily FliG
SCOP superfamily Apolipophorin-III
SCOP superfamily Barrier-to-autointegration factor, BAF
SCOP superfamily Rad51 N-terminal domain-like
SCOP superfamily SAM/Pointed domain
SCOP superfamily t-snare proteins
SCOP superfamily alpha-catenin/vinculin-like
SCOP superfamily Apolipoprotein
SCOP superfamily Histone-fold
SCOP superfamily Spectrin repeat
SCOP superfamily RNA polymerase subunit RPB10
SCOP superfamily N-terminal Zn binding domain of HIV integrase
SCOP superfamily Prefoldin
SCOP superfamily RILP dimerisation region
SCOP superfamily YfgJ-like
SCOP superfamily MAPEG domain-like
SCOP superfamily SNF-like
SCOP superfamily ATP synthase D chain-like
SCOP superfamily ATP12-like
SCOP superfamily Taf5 N-terminal domain-like
SCOP superfamily HupF/HypC-like
SCOP superfamily TerB-like
SCOP superfamily BH2638-like
SCOP superfamily IVS-encoded protein-like
SCOP superfamily DsbB-like
SCOP superfamily PRP4-like
SCOP superfamily Htr2 transmembrane domain-like
SCOP superfamily NOB1 zinc finger-like
SCOP superfamily Heme iron utilization protein-like
SCOP superfamily FdhE-like
SCOP superfamily YgbK-like
SCOP superfamily YidB-like
SCOP superfamily SP0561-like
SCOP superfamily Type III secretion system domain
SCOP superfamily PA2201 N-terminal domain-like
SCOP superfamily LemA-like
SCOP superfamily DNA mismatch repair protein MutL
SCOP superfamily HlyD-like secretion proteins
SCOP superfamily Dystroglycan, domain 2
SCOP superfamily Sporulation related repeat
SCOP superfamily CutC-like
SCOP superfamily Oligoxyloglucan reducing end-specific cellobiohydrolase
SCOP superfamily I/LWEQ domain
SCOP superfamily A middle domain of Talin 1
SCOP superfamily Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
SCOP superfamily Sec-C motif
SCOP superfamily V-type ATP synthase subunit C
SCOP superfamily Sec-beta subunit
SCOP superfamily Preprotein translocase SecE subunit
SCOP superfamily 2-methylcitrate dehydratase PrpD
SCOP superfamily Bacterial fluorinating enzyme, N-terminal domain
SCOP superfamily Adhesin YadA, collagen-binding domain
SCOP superfamily Stathmin
SCOP superfamily Formin homology 2 domain (FH2 domain)
SCOP superfamily C-terminal domain of Ku80
SCOP superfamily YcfC-like
SCOP superfamily N-terminal domain of adenylylcyclase associated protein, CAP
SCOP superfamily Docking domain B of the erythromycin polyketide synthase (DEBS)

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.