| 279 | 243 | 60 | 12 | SCOP 52540 | P-loop containing nucleoside triphosphate hydrolases |
| 100 | 99 | 17 | 3 | SCOP 56112 | Protein kinase-like (PK-like) |
| 82 | 74 | 22 | 8 | SCOP 48371 | ARM repeat |
| 77 | 70 | 17 | 2 | SCOP 50978 | WD40 repeat-like |
| 64 | 62 | 24 | 8 | SCOP 51735 | NAD(P)-binding Rossmann-fold domains |
| 62 | 45 | 16 | 1 | SCOP 54928 | RNA-binding domain, RBD |
| 55 | 29 | 10 | 4 | SCOP 53067 | Actin-like ATPase domain |
| 53 | 40 | 18 | 2 | SCOP 48452 | TPR-like |
| 50 | 38 | 19 | 5 | SCOP 50249 | Nucleic acid-binding proteins |
| 47 | 44 | 6 | 0 | SCOP 103473 | MFS general substrate transporter |
| 45 | 36 | 13 | 5 | SCOP 52833 | Thioredoxin-like |
| 38 | 38 | 5 | 7 | SCOP 53474 | alpha/beta-Hydrolases |
| 38 | 38 | 5 | 7 | SCOP 53335 | S-adenosyl-L-methionine-dependent methyltransferases |
| 36 | 35 | 19 | 1 | SCOP 57850 | RING/U-box |
| 34 | 32 | 18 | 4 | SCOP 46785 | "Winged helix" DNA-binding domain |
| 34 | 33 | 19 | 4 | SCOP 50729 | PH domain-like |
| 34 | 34 | 5 | 0 | SCOP 57701 | Zn2/Cys6 DNA-binding domain |
| 31 | 31 | 3 | 1 | SCOP 103506 | Mitochondrial carrier |
| 31 | 29 | 6 | 0 | SCOP 57667 | beta-beta-alpha zinc fingers |
| 27 | 27 | 6 | 3 | SCOP 53448 | Nucleotide-diphospho-sugar transferases |
| 25 | 25 | 4 | 4 | SCOP 53383 | PLP-dependent transferases |
| 24 | 19 | 9 | 3 | SCOP 46689 | Homeodomain-like |
| 23 | 19 | 9 | 5 | SCOP 51905 | FAD/NAD(P)-binding domain |
| 22 | 22 | 7 | 4 | SCOP 56784 | HAD-like |
| 22 | 21 | 14 | 4 | SCOP 54211 | Ribosomal protein S5 domain 2-like |
| 22 | 13 | 4 | 1 | SCOP 47954 | Cyclin-like |
| 20 | 19 | 14 | 4 | SCOP 52374 | Nucleotidylyl transferase |
| 20 | 20 | 7 | 5 | SCOP 54001 | Cysteine proteinases |
| 20 | 20 | 13 | 0 | SCOP 46565 | Chaperone J-domain |
| 19 | 18 | 10 | 4 | SCOP 53098 | Ribonuclease H-like |
| 19 | 19 | 5 | 3 | SCOP 56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) |
| 19 | 19 | 5 | 1 | SCOP 47113 | Histone-fold |
| 19 | 18 | 7 | 2 | SCOP 55729 | Acyl-CoA N-acyltransferases (Nat) |
| 18 | 17 | 15 | 2 | SCOP 55681 | Class II aaRS and biotin synthetases |
| 18 | 17 | 9 | 2 | SCOP 54236 | Ubiquitin-like |
| 18 | 18 | 6 | 1 | SCOP 54495 | UBC-like |
| 17 | 17 | 6 | 3 | SCOP 56300 | Metallo-dependent phosphatases |
| 17 | 16 | 11 | 1 | SCOP 57903 | FYVE/PHD zinc finger |
| 16 | 9 | 5 | 6 | SCOP 52518 | Thiamin diphosphate-binding fold (THDP-binding) |
| 16 | 16 | 4 | 1 | SCOP 50182 | Sm-like ribonucleoproteins |
| 16 | 16 | 6 | 3 | SCOP 51445 | (Trans)glycosidases |
| 15 | 14 | 9 | 1 | SCOP 49879 | SMAD/FHA domain |
| 14 | 14 | 7 | 2 | SCOP 52317 | Class I glutamine amidotransferase-like |
| 14 | 13 | 10 | 0 | SCOP 103657 | BAR/IMD domain-like |
| 14 | 14 | 7 | 4 | SCOP 64356 | SNARE-like |
| 14 | 13 | 10 | 2 | SCOP 50447 | Translation proteins |
| 14 | 13 | 8 | 1 | SCOP 63380 | Riboflavin synthase domain-like |
| 14 | 13 | 11 | 0 | SCOP 46934 | UBA-like |
| 13 | 13 | 4 | 3 | SCOP 53254 | Phosphoglycerate mutase-like |
| 13 | 11 | 6 | 2 | SCOP 52799 | (Phosphotyrosine protein) phosphatases II |
| 13 | 13 | 5 | 1 | SCOP 48403 | Ankyrin repeat |
| 13 | 11 | 10 | 1 | SCOP 50044 | SH3-domain |
| 13 | 5 | 3 | 1 | SCOP 63411 | LuxS/MPP-like metallohydrolase |
| 13 | 13 | 7 | 0 | SCOP 52343 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| 13 | 8 | 6 | 1 | SCOP 47370 | Bromodomain |
| 13 | 13 | 7 | 2 | SCOP 48464 | ENTH/VHS domain |
| 13 | 13 | 5 | 1 | SCOP 57959 | Leucine zipper domain |
| 12 | 12 | 6 | 1 | SCOP 50104 | Translation proteins SH3-like domain |
| 12 | 12 | 9 | 2 | SCOP 52402 | Adenine nucleotide alpha hydrolases-like |
| 12 | 11 | 6 | 1 | SCOP 58038 | SNARE fusion complex |
| 12 | 11 | 8 | 1 | SCOP 47473 | EF-hand |
| 12 | 12 | 6 | 2 | SCOP 81296 | E set domains |
| 12 | 12 | 7 | 1 | SCOP 64268 | PX domain |
| 12 | 8 | 6 | 0 | SCOP 52058 | L domain-like |
| 12 | 8 | 5 | 0 | SCOP 103481 | Multidrug resistance efflux transporter EmrE |
| 12 | 8 | 6 | 1 | SCOP 54791 | Eukaryotic type KH-domain (KH-domain type I) |
| 11 | 11 | 2 | 1 | SCOP 50129 | GroES-like |
| 11 | 10 | 5 | 1 | SCOP 50891 | Cyclophilin-like |
| 11 | 7 | 6 | 0 | SCOP 52113 | BRCT domain |
| 11 | 11 | 7 | 0 | SCOP 48350 | GTPase activation domain, GAP |
| 11 | 6 | 4 | 0 | SCOP 47923 | Ypt/Rab-GAP domain of gyp1p |
| 11 | 6 | 6 | 0 | SCOP 57756 | Retrovirus zinc finger-like domains |
| 10 | 10 | 5 | 5 | SCOP 51569 | Aldolase |
| 10 | 10 | 4 | 0 | SCOP 57716 | Glucocorticoid receptor-like (DNA-binding domain) |
| 10 | 10 | 8 | 1 | SCOP 53187 | Zn-dependent exopeptidases |
| 10 | 10 | 2 | 1 | SCOP 49899 | Concanavalin A-like lectins/glucanases |
| 10 | 10 | 5 | 3 | SCOP 52467 | DHS-like NAD/FAD-binding domain |
| 10 | 9 | 5 | 2 | SCOP 48179 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| 10 | 7 | 4 | 0 | SCOP 90123 | ABC transporter transmembrane region |
| 10 | 10 | 5 | 4 | SCOP 55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |
| 10 | 6 | 6 | 0 | SCOP 49562 | C2 domain (Calcium/lipid-binding domain, CaLB) |
| 10 | 5 | 5 | 1 | SCOP 49493 | HSP40/DnaJ peptide-binding domain |
| 9 | 9 | 5 | 4 | SCOP 51556 | Metallo-dependent hydrolases |
| 9 | 9 | 2 | 2 | SCOP 53271 | PRTase-like |
| 9 | 9 | 2 | 0 | SCOP 57829 | Zn-binding ribosomal proteins |
| 9 | 9 | 3 | 3 | SCOP 53613 | Ribokinase-like |
| 9 | 8 | 5 | 2 | SCOP 54197 | HIT-like |
| 9 | 8 | 5 | 2 | SCOP 100950 | NagB/RpiA/CoA transferase-like |
| 9 | 8 | 4 | 2 | SCOP 56281 | Metallo-hydrolase/oxidoreductase |
| 9 | 9 | 2 | 1 | SCOP 51430 | NAD(P)-linked oxidoreductase |
| 9 | 9 | 5 | 2 | SCOP 55315 | L30e-like |
| 9 | 9 | 5 | 3 | SCOP 56672 | DNA/RNA polymerases |
| 9 | 9 | 7 | 0 | SCOP 52954 | Class II aaRS ABD-related |
| 9 | 8 | 6 | 0 | SCOP 82199 | SET domain |
| 9 | 9 | 4 | 1 | SCOP 100920 | Heat shock protein 70kD (HSP70), peptide-binding domain |
| 9 | 6 | 3 | 0 | SCOP 90229 | CCCH zinc finger |
| 8 | 8 | 2 | 5 | SCOP 51366 | Ribulose-phoshate binding barrel |
| 8 | 7 | 4 | 0 | SCOP 52821 | Rhodanese/Cell cycle control phosphatase |
| 8 | 8 | 4 | 2 | SCOP 53756 | UDP-Glycosyltransferase/glycogen phosphorylase |
| 8 | 8 | 5 | 1 | SCOP 52047 | RNI-like |
| 8 | 6 | 6 | 1 | SCOP 54695 | POZ domain |
| 8 | 5 | 5 | 2 | SCOP 52777 | CoA-dependent acyltransferases |
| 8 | 3 | 3 | 1 | SCOP 53738 | Phosphoglucomutase, first 3 domains |
| 7 | 7 | 5 | 1 | SCOP 55120 | Pseudouridine synthase |
| 7 | 7 | 4 | 1 | SCOP 52218 | Flavoproteins |
| 7 | 7 | 1 | 1 | SCOP 53659 | Isocitrate/Isopropylmalate dehydrogenase-like |
| 7 | 5 | 4 | 2 | SCOP 54637 | Thioesterase/thiol ester dehydrase-isomerase |
| 7 | 7 | 4 | 1 | SCOP 56801 | Acetyl-CoA synthetase-like |
| 7 | 7 | 4 | 1 | SCOP 50630 | Acid proteases |
| 7 | 7 | 2 | 1 | SCOP 69572 | Activating enzymes of the ubiquitin-like proteins |
| 7 | 6 | 5 | 2 | SCOP 55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| 7 | 7 | 6 | 1 | SCOP 51230 | Single hybrid motif |
| 7 | 7 | 6 | 1 | SCOP 53300 | vWA-like |
| 7 | 7 | 3 | 1 | SCOP 56219 | DNase I-like |
| 7 | 7 | 7 | 0 | SCOP 50998 | Quinoprotein alcohol dehydrogenase-like |
| 7 | 7 | 6 | 1 | SCOP 47616 | GST C-terminal domain-like |
| 7 | 6 | 3 | 0 | SCOP 117281 | Kelch motif |
| 7 | 7 | 3 | 1 | SCOP 47661 | t-snare proteins |
| 7 | 7 | 4 | 0 | SCOP 52029 | GroEL apical domain-like |
| 7 | 7 | 2 | 0 | SCOP 100934 | Heat shock protein 70kD (HSP70), C-terminal subdomain |
| 6 | 6 | 2 | 1 | SCOP 54189 | Ribosomal proteins S24e, L23 and L15e |
| 6 | 6 | 4 | 1 | SCOP 53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes |
| 6 | 6 | 2 | 1 | SCOP 53720 | ALDH-like |
| 6 | 6 | 2 | 1 | SCOP 51395 | FMN-linked oxidoreductases |
| 6 | 6 | 3 | 2 | SCOP 50475 | FMN-binding split barrel |
| 6 | 6 | 4 | 1 | SCOP 88723 | PIN domain-like |
| 6 | 6 | 2 | 0 | SCOP 46579 | Prefoldin |
| 6 | 6 | 4 | 1 | SCOP 74650 | Galactose mutarotase-like |
| 6 | 6 | 4 | 1 | SCOP 55856 | Cytochrome b5-like heme/steroid binding domain |
| 6 | 6 | 4 | 0 | SCOP 52151 | FabD/lysophospholipase-like |
| 6 | 6 | 3 | 2 | SCOP 52283 | Formate/glycerate dehydrogenase catalytic domain-like |
| 6 | 4 | 3 | 1 | SCOP 54631 | CBS-domain pair |
| 6 | 5 | 4 | 1 | SCOP 57783 | Zinc beta-ribbon |
| 6 | 6 | 5 | 1 | SCOP 81301 | Nucleotidyltransferase |
| 6 | 6 | 6 | 1 | SCOP 88697 | PUA domain-like |
| 6 | 5 | 4 | 0 | SCOP 55021 | ACT-like |
| 6 | 3 | 3 | 1 | SCOP 56024 | Phospholipase D/nuclease |
| 6 | 6 | 3 | 0 | SCOP 48592 | GroEL equatorial domain-like |
| 6 | 6 | 6 | 1 | SCOP 47323 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| 6 | 3 | 3 | 0 | SCOP 54980 | EF-G C-terminal domain-like |
| 6 | 2 | 1 | 1 | SCOP 55973 | S-adenosylmethionine synthetase |
| 6 | 6 | 4 | 1 | SCOP 81383 | F-box domain |
| 6 | 3 | 1 | 0 | SCOP 56053 | Ribosomal protein L6 |
| 6 | 6 | 3 | 1 | SCOP 52087 | CRAL/TRIO domain |
| 5 | 5 | 4 | 2 | SCOP 56059 | Glutathione synthetase ATP-binding domain-like |
| 5 | 5 | 3 | 2 | SCOP 53927 | Cytidine deaminase-like |
| 5 | 5 | 3 | 0 | SCOP 56808 | Ribosomal protein L1 |
| 5 | 5 | 5 | 2 | SCOP 53137 | Translational machinery components |
| 5 | 5 | 5 | 1 | SCOP 55920 | Creatinase/aminopeptidase |
| 5 | 5 | 4 | 1 | SCOP 75217 | alpha/beta knot |
| 5 | 5 | 5 | 1 | SCOP 55486 | Metalloproteases ("zincins"), catalytic domain |
| 5 | 3 | 3 | 0 | SCOP 81333 | F1F0 ATP synthase subunit C |
| 5 | 5 | 3 | 0 | SCOP 55811 | Nudix |
| 5 | 5 | 2 | 0 | SCOP 144122 | Tim10-like |
| 5 | 5 | 4 | 1 | SCOP 54534 | FKBP-like |
| 5 | 5 | 4 | 2 | SCOP 54427 | NTF2-like |
| 5 | 4 | 4 | 3 | SCOP 49785 | Galactose-binding domain-like |
| 5 | 5 | 3 | 1 | SCOP 56317 | Carbon-nitrogen hydrolase |
| 5 | 5 | 2 | 4 | SCOP 51182 | RmlC-like cupins |
| 5 | 5 | 4 | 2 | SCOP 48208 | Six-hairpin glycosidases |
| 5 | 4 | 4 | 0 | SCOP 81901 | HCP-like |
| 5 | 5 | 4 | 1 | SCOP 82171 | DPP6 N-terminal domain-like |
| 5 | 5 | 4 | 0 | SCOP 47592 | SWIB/MDM2 domain |
| 5 | 5 | 4 | 0 | SCOP 51246 | Rudiment single hybrid motif |
| 5 | 5 | 4 | 2 | SCOP 52440 | PreATP-grasp domain |
| 5 | 5 | 3 | 0 | SCOP 57863 | ArfGap/RecO-like zinc finger |
| 5 | 5 | 3 | 1 | SCOP 54768 | dsRNA-binding domain-like |
| 5 | 5 | 2 | 1 | SCOP 47459 | HLH, helix-loop-helix DNA-binding domain |
| 5 | 4 | 3 | 1 | SCOP 48366 | Ras GEF |
| 5 | 5 | 4 | 0 | SCOP 49348 | Clathrin adaptor appendage domain |
| 5 | 5 | 4 | 1 | SCOP 75632 | Cullin homology domain |
| 5 | 5 | 2 | 0 | SCOP 54849 | GroEL-intermediate domain like |
| 4 | 4 | 3 | 1 | SCOP 81606 | PP2C-like |
| 4 | 4 | 3 | 2 | SCOP 53697 | SIS domain |
| 4 | 4 | 1 | 0 | SCOP 111331 | NAD kinase/diacylglycerol kinase-like |
| 4 | 4 | 3 | 1 | SCOP 52080 | Ribosomal proteins L15p and L18e |
| 4 | 4 | 2 | 0 | SCOP 55174 | Alpha-L RNA-binding motif |
| 4 | 4 | 2 | 3 | SCOP 51621 | Phosphoenolpyruvate/pyruvate domain |
| 4 | 3 | 2 | 1 | SCOP 55298 | YjgF-like |
| 4 | 4 | 3 | 0 | SCOP 55129 | Ribosomal protein L30p/L7e |
| 4 | 4 | 3 | 0 | SCOP 49764 | HSP20-like chaperones |
| 4 | 4 | 3 | 1 | SCOP 47095 | HMG-box |
| 4 | 4 | 3 | 0 | SCOP 48613 | Heme oxygenase-like |
| 4 | 4 | 3 | 0 | SCOP 81321 | Family A G protein-coupled receptor-like |
| 4 | 3 | 2 | 1 | SCOP 55753 | Actin depolymerizing proteins |
| 4 | 4 | 1 | 0 | SCOP 48317 | Acid phosphatase/Vanadium-dependent haloperoxidase |
| 4 | 4 | 3 | 1 | SCOP 53649 | Alkaline phosphatase-like |
| 4 | 4 | 2 | 1 | SCOP 144000 | Oxysterol-binding protein-like |
| 4 | 4 | 3 | 0 | SCOP 54897 | Protease propeptides/inhibitors |
| 4 | 3 | 3 | 0 | SCOP 57997 | Tropomyosin |
| 4 | 4 | 4 | 3 | SCOP 47819 | HRDC-like |
| 4 | 4 | 3 | 2 | SCOP 55257 | RBP11-like subunits of RNA polymerase |
| 4 | 4 | 4 | 1 | SCOP 52768 | Arginase/deacetylase |
| 4 | 4 | 3 | 0 | SCOP 144091 | Rhomboid-like |
| 4 | 4 | 2 | 1 | SCOP 52016 | LeuD/IlvD-like |
| 4 | 4 | 2 | 0 | SCOP 161111 | Cation efflux protein transmembrane domain-like |
| 4 | 1 | 1 | 0 | SCOP 82153 | FAS1 domain |
| 4 | 4 | 1 | 1 | SCOP 51604 | Enolase C-terminal domain-like |
| 4 | 4 | 4 | 1 | SCOP 52743 | Subtilisin-like |
| 4 | 4 | 4 | 1 | SCOP 57938 | DnaJ/Hsp40 cysteine-rich domain |
| 4 | 2 | 2 | 1 | SCOP 55608 | Homing endonucleases |
| 4 | 4 | 4 | 1 | SCOP 53223 | Aminoacid dehydrogenase-like, N-terminal domain |
| 4 | 4 | 3 | 2 | SCOP 48019 | post-AAA+ oligomerization domain-like |
| 4 | 4 | 4 | 2 | SCOP 52922 | TK C-terminal domain-like |
| 4 | 4 | 3 | 0 | SCOP 48334 | DNA repair protein MutS, domain III |
| 4 | 4 | 1 | 1 | SCOP 54826 | Enolase N-terminal domain-like |
| 4 | 4 | 3 | 2 | SCOP 54373 | FAD-linked reductases, C-terminal domain |
| 4 | 4 | 3 | 0 | SCOP 48065 | DBL homology domain (DH-domain) |
| 4 | 4 | 1 | 1 | SCOP 46938 | CRAL/TRIO N-terminal domain |
| 4 | 4 | 4 | 1 | SCOP 50677 | ValRS/IleRS/LeuRS editing domain |
| 4 | 4 | 2 | 0 | SCOP 101576 | Supernatant protein factor (SPF), C-terminal domain |
| 4 | 4 | 2 | 1 | SCOP 81271 | TGS-like |
| 4 | 4 | 3 | 2 | SCOP 74788 | Cullin repeat-like |
| 4 | 4 | 2 | 1 | SCOP 55455 | SRF-like |
| 4 | 4 | 3 | 1 | SCOP 49447 | Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor |
| 4 | 4 | 4 | 0 | SCOP 51045 | WW domain |
| 4 | 4 | 3 | 0 | SCOP 89000 | post-HMGL domain-like |
| 4 | 4 | 2 | 0 | SCOP 89009 | GAT-like domain |
| 3 | 3 | 3 | 1 | SCOP 81338 | Aquaporin-like |
| 3 | 3 | 2 | 1 | SCOP 52166 | Ribosomal protein L4 |
| 3 | 3 | 2 | 0 | SCOP 54843 | Ribosomal protein L22 |
| 3 | 3 | 1 | 1 | SCOP 50193 | Ribosomal protein L14 |
| 3 | 3 | 2 | 1 | SCOP 55282 | RL5-like |
| 3 | 3 | 1 | 1 | SCOP 56047 | Ribosomal protein S8 |
| 3 | 2 | 2 | 0 | SCOP 56214 | 4'-phosphopantetheinyl transferase |
| 3 | 3 | 2 | 0 | SCOP 69593 | Glycerol-3-phosphate (1)-acyltransferase |
| 3 | 3 | 2 | 1 | SCOP 47240 | Ferritin-like |
| 3 | 3 | 3 | 0 | SCOP 53850 | Periplasmic binding protein-like II |
| 3 | 3 | 2 | 1 | SCOP 52161 | Ribosomal protein L13 |
| 3 | 3 | 3 | 1 | SCOP 53633 | Carbamate kinase-like |
| 3 | 3 | 3 | 1 | SCOP 48150 | DNA-glycosylase |
| 3 | 3 | 3 | 1 | SCOP 102114 | Radical SAM enzymes |
| 3 | 3 | 1 | 1 | SCOP 56655 | Carbohydrate phosphatase |
| 3 | 3 | 1 | 0 | SCOP 82657 | BolA-like |
| 3 | 3 | 2 | 1 | SCOP 48576 | Terpenoid synthases |
| 3 | 3 | 3 | 2 | SCOP 51419 | PLP-binding barrel |
| 3 | 3 | 2 | 2 | SCOP 56104 | SAICAR synthase-like |
| 3 | 3 | 1 | 0 | SCOP 109604 | HD-domain/PDEase-like |
| 3 | 3 | 2 | 1 | SCOP 48256 | Citrate synthase |
| 3 | 3 | 2 | 0 | SCOP 110296 | Oligoxyloglucan reducing end-specific cellobiohydrolase |
| 3 | 3 | 2 | 2 | SCOP 46626 | Cytochrome c |
| 3 | 3 | 2 | 1 | SCOP 48239 | Terpenoid cyclases/Protein prenyltransferases |
| 3 | 3 | 1 | 0 | SCOP 81406 | Mitochondrial cytochrome c oxidase subunit IV |
| 3 | 3 | 2 | 1 | SCOP 53774 | Glutaminase/Asparaginase |
| 3 | 3 | 3 | 0 | SCOP 51197 | Clavaminate synthase-like |
| 3 | 2 | 2 | 1 | SCOP 69645 | Arp2/3 complex subunits |
| 3 | 3 | 2 | 1 | SCOP 111126 | Ligand-binding domain in the NO signalling and Golgi transport |
| 3 | 3 | 2 | 0 | SCOP 81343 | Fumarate reductase respiratory complex transmembrane subunits |
| 3 | 3 | 2 | 0 | SCOP 88713 | Glycoside hydrolase/deacetylase |
| 3 | 3 | 2 | 0 | SCOP 53032 | tRNA-intron endonuclease catalytic domain-like |
| 3 | 3 | 3 | 1 | SCOP 55159 | eIF1-like |
| 3 | 3 | 3 | 1 | SCOP 55008 | HMA, heavy metal-associated domain |
| 3 | 3 | 3 | 0 | SCOP 52172 | CheY-like |
| 3 | 3 | 2 | 0 | SCOP 52091 | SpoIIaa-like |
| 3 | 3 | 1 | 1 | SCOP 48264 | Cytochrome P450 |
| 3 | 1 | 1 | 0 | SCOP 49503 | Cupredoxins |
| 3 | 2 | 2 | 1 | SCOP 52507 | Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |
| 3 | 2 | 2 | 1 | SCOP 51206 | cAMP-binding domain-like |
| 3 | 3 | 1 | 1 | SCOP 53732 | Aconitase iron-sulfur domain |
| 3 | 3 | 2 | 0 | SCOP 69065 | RNase III domain-like |
| 3 | 3 | 3 | 0 | SCOP 50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase |
| 3 | 3 | 2 | 0 | SCOP 69322 | Tricorn protease domain 2 |
| 3 | 2 | 2 | 1 | SCOP 53901 | Thiolase-like |
| 3 | 3 | 1 | 1 | SCOP 89124 | Nop domain |
| 3 | 3 | 3 | 1 | SCOP 55186 | ThrRS/AlaRS common domain |
| 3 | 3 | 3 | 1 | SCOP 52490 | Tubulin nucleotide-binding domain-like |
| 3 | 3 | 2 | 1 | SCOP 50465 | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |
| 3 | 3 | 2 | 0 | SCOP 55103 | FAD-linked oxidases, C-terminal domain |
| 3 | 3 | 2 | 0 | SCOP 56176 | FAD-binding/transporter-associated domain-like |
| 3 | 3 | 1 | 0 | SCOP 46906 | Ribosomal protein L11, C-terminal domain |
| 3 | 3 | 3 | 1 | SCOP 81995 | beta-sandwich domain of Sec23/24 |
| 3 | 3 | 3 | 0 | SCOP 81665 | Calcium ATPase, transmembrane domain M |
| 3 | 3 | 3 | 0 | SCOP 51011 | Glycosyl hydrolase domain |
| 3 | 3 | 3 | 1 | SCOP 54719 | Fe,Mn superoxide dismutase (SOD), C-terminal domain |
| 3 | 3 | 2 | 1 | SCOP 55060 | GHMP Kinase, C-terminal domain |
| 3 | 3 | 3 | 0 | SCOP 68906 | SAP domain |
| 3 | 2 | 2 | 1 | SCOP 56042 | PurM C-terminal domain-like |
| 3 | 3 | 2 | 1 | SCOP 56425 | Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| 3 | 3 | 3 | 1 | SCOP 63737 | Leukotriene A4 hydrolase N-terminal domain |
| 3 | 2 | 2 | 1 | SCOP 55326 | PurM N-terminal domain-like |
| 3 | 3 | 2 | 1 | SCOP 81631 | PAP/OAS1 substrate-binding domain |
| 3 | 2 | 2 | 1 | SCOP 55945 | TATA-box binding protein-like |
| 3 | 3 | 3 | 0 | SCOP 74924 | Cap-Gly domain |
| 3 | 3 | 2 | 1 | SCOP 47807 | 5' to 3' exonuclease, C-terminal subdomain |
| 3 | 3 | 2 | 1 | SCOP 50615 | N-terminal domain of alpha and beta subunits of F1 ATP synthase |
| 3 | 3 | 3 | 0 | SCOP 158573 | GINS helical bundle-like |
| 3 | 3 | 1 | 0 | SCOP 82109 | MIR domain |
| 3 | 3 | 2 | 0 | SCOP 47769 | SAM/Pointed domain |
| 3 | 3 | 3 | 1 | SCOP 109993 | VPS9 domain |
| 3 | 3 | 3 | 1 | SCOP 82754 | C-terminal, gelsolin-like domain of Sec23/24 |
| 3 | 3 | 2 | 0 | SCOP 52025 | PA domain |
| 3 | 3 | 2 | 1 | SCOP 48425 | Sec7 domain |
| 3 | 3 | 3 | 0 | SCOP 81653 | Calcium ATPase, transduction domain A |
| 3 | 3 | 1 | 1 | SCOP 54747 | Ribosomal L11/L12e N-terminal domain |
| 3 | 3 | 2 | 0 | SCOP 75553 | Smc hinge domain |
| 3 | 3 | 1 | 0 | SCOP 55666 | Ribonuclease PH domain 2-like |
| 3 | 3 | 2 | 1 | SCOP 47917 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| 3 | 2 | 2 | 0 | SCOP 81698 | FF domain |
| 3 | 3 | 3 | 1 | SCOP 111430 | YAP1 redox domain |
| 3 | 2 | 2 | 0 | SCOP 140383 | BSD domain-like |
| 3 | 3 | 3 | 1 | SCOP 82919 | Zn-finger domain of Sec23/24 |
| 3 | 3 | 2 | 0 | SCOP 53150 | DNA repair protein MutS, domain II |
| 2 | 2 | 2 | 1 | SCOP 75304 | Amidase signature (AS) enzymes |
| 2 | 2 | 2 | 0 | SCOP 54999 | Ribosomal protein S10 |
| 2 | 2 | 2 | 0 | SCOP 54570 | Ribosomal protein S19 |
| 2 | 2 | 2 | 1 | SCOP 54686 | Ribosomal protein L16p/L10e |
| 2 | 2 | 1 | 1 | SCOP 103491 | Preprotein translocase SecY subunit |
| 2 | 2 | 2 | 0 | SCOP 46946 | S13-like H2TH domain |
| 2 | 1 | 1 | 1 | SCOP 53784 | Phosphofructokinase |
| 2 | 2 | 2 | 1 | SCOP 53597 | Dihydrofolate reductase-like |
| 2 | 2 | 2 | 1 | SCOP 75620 | Release factor |
| 2 | 2 | 2 | 1 | SCOP 51695 | PLC-like phosphodiesterases |
| 2 | 2 | 1 | 1 | SCOP 82649 | SufE/NifU |
| 2 | 2 | 2 | 1 | SCOP 50324 | Inorganic pyrophosphatase |
| 2 | 2 | 2 | 0 | SCOP 160369 | Ribosomal protein L10-like |
| 2 | 2 | 2 | 0 | SCOP 47060 | S15/NS1 RNA-binding domain |
| 2 | 2 | 1 | 1 | SCOP 64484 | beta and beta-prime subunits of DNA dependent RNA-polymerase |
| 2 | 2 | 1 | 1 | SCOP 48557 | L-aspartase-like |
| 2 | 2 | 2 | 0 | SCOP 51161 | Trimeric LpxA-like enzymes |
| 2 | 2 | 2 | 1 | SCOP 55821 | YrdC/RibB |
| 2 | 2 | 1 | 0 | SCOP 89360 | HesB-like domain |
| 2 | 2 | 2 | 0 | SCOP 54292 | 2Fe-2S ferredoxin-like |
| 2 | 2 | 2 | 1 | SCOP 51412 | Inosine monophosphate dehydrogenase (IMPDH) |
| 2 | 2 | 2 | 1 | SCOP 52313 | Ribosomal protein S2 |
| 2 | 1 | 1 | 1 | SCOP 142695 | RibA-like |
| 2 | 2 | 2 | 1 | SCOP 52096 | ClpP/crotonase |
| 2 | 2 | 1 | 0 | SCOP 46561 | Ribosomal protein L29 (L29p) |
| 2 | 2 | 1 | 0 | SCOP 48140 | Ribosomal protein L19 (L19e) |
| 2 | 2 | 2 | 1 | SCOP 144217 | CSL zinc finger |
| 2 | 2 | 2 | 1 | SCOP 52949 | Macro domain-like |
| 2 | 2 | 1 | 0 | SCOP 55469 | FMN-dependent nitroreductase-like |
| 2 | 2 | 1 | 1 | SCOP 160683 | YNR034W-A-like |
| 2 | 2 | 1 | 0 | SCOP 54575 | Ribosomal protein L31e |
| 2 | 1 | 1 | 1 | SCOP 51726 | UROD/MetE-like |
| 2 | 2 | 2 | 1 | SCOP 56634 | Heme-dependent catalase-like |
| 2 | 2 | 2 | 2 | SCOP 140718 | Mediator hinge subcomplex-like |
| 2 | 2 | 2 | 1 | SCOP 56322 | ADC synthase |
| 2 | 2 | 1 | 1 | SCOP 57798 | Casein kinase II beta subunit |
| 2 | 2 | 1 | 0 | SCOP 63393 | RNA polymerase subunits |
| 2 | 2 | 1 | 1 | SCOP 57868 | Metallothionein |
| 2 | 2 | 2 | 1 | SCOP 89895 | FYSH domain |
| 2 | 2 | 1 | 1 | SCOP 56752 | D-aminoacid aminotransferase-like PLP-dependent enzymes |
| 2 | 2 | 1 | 2 | SCOP 90096 | Subunits of heterodimeric actin filament capping protein Capz |
| 2 | 2 | 1 | 1 | SCOP 56019 | The spindle assembly checkpoint protein mad2 |
| 2 | 2 | 1 | 0 | SCOP 51306 | LexA/Signal peptidase |
| 2 | 2 | 1 | 0 | SCOP 51645 | Malate synthase G |
| 2 | 2 | 2 | 1 | SCOP 48439 | Protein prenylyltransferase |
| 2 | 2 | 1 | 1 | SCOP 52972 | ITPase-like |
| 2 | 2 | 2 | 1 | SCOP 49329 | Cu,Zn superoxide dismutase-like |
| 2 | 2 | 2 | 0 | SCOP 47072 | Cysteine alpha-hairpin motif |
| 2 | 2 | 1 | 0 | SCOP 82282 | Homocysteine S-methyltransferase |
| 2 | 2 | 2 | 1 | SCOP 64153 | YjeF N-terminal domain-like |
| 2 | 2 | 2 | 1 | SCOP 47576 | Calponin-homology domain, CH-domain |
| 2 | 1 | 1 | 0 | SCOP 81324 | Voltage-gated potassium channels |
| 2 | 2 | 2 | 0 | SCOP 102712 | JAB1/MPN domain |
| 2 | 1 | 1 | 1 | SCOP 54593 | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |
| 2 | 2 | 2 | 0 | SCOP 46955 | Putative DNA-binding domain |
| 2 | 2 | 1 | 1 | SCOP 111352 | Ammonium transporter |
| 2 | 2 | 2 | 1 | SCOP 117916 | Fe-S cluster assembly (FSCA) domain-like |
| 2 | 2 | 2 | 0 | SCOP 89550 | PHP domain-like |
| 2 | 2 | 2 | 1 | SCOP 55797 | PR-1-like |
| 2 | 2 | 1 | 1 | SCOP 50800 | PK beta-barrel domain-like |
| 2 | 2 | 2 | 0 | SCOP 103025 | Folate-binding domain |
| 2 | 2 | 1 | 1 | SCOP 52335 | Methylglyoxal synthase-like |
| 2 | 2 | 1 | 0 | SCOP 100939 | SPOC domain-like |
| 2 | 2 | 2 | 2 | SCOP 56091 | DNA ligase/mRNA capping enzyme, catalytic domain |
| 2 | 2 | 1 | 0 | SCOP 116820 | Rps17e-like |
| 2 | 2 | 1 | 0 | SCOP 160374 | RplX-like |
| 2 | 2 | 2 | 0 | SCOP 53092 | Creatinase/prolidase N-terminal domain |
| 2 | 1 | 1 | 0 | SCOP 47203 | Acyl-CoA dehydrogenase C-terminal domain-like |
| 2 | 2 | 2 | 0 | SCOP 46589 | tRNA-binding arm |
| 2 | 2 | 1 | 0 | SCOP 53244 | MurD-like peptide ligases, peptide-binding domain |
| 2 | 2 | 2 | 0 | SCOP 143865 | CorA soluble domain-like |
| 2 | 1 | 1 | 1 | SCOP 55979 | DNA clamp |
| 2 | 2 | 1 | 2 | SCOP 51690 | Nicotinate/Quinolinate PRTase C-terminal domain-like |
| 2 | 2 | 2 | 0 | SCOP 160443 | SMR domain-like |
| 2 | 1 | 1 | 1 | SCOP 56014 | Nitrite and sulphite reductase 4Fe-4S domain-like |
| 2 | 2 | 1 | 1 | SCOP 52935 | PK C-terminal domain-like |
| 2 | 2 | 2 | 0 | SCOP 51971 | Nucleotide-binding domain |
| 2 | 1 | 1 | 1 | SCOP 55658 | L9 N-domain-like |
| 2 | 2 | 2 | 0 | SCOP 160059 | PriA/YqbF domain |
| 2 | 2 | 2 | 1 | SCOP 55307 | Tubulin C-terminal domain-like |
| 2 | 2 | 1 | 1 | SCOP 140990 | FtsH protease domain-like |
| 2 | 2 | 2 | 1 | SCOP 51294 | Hedgehog/intein (Hint) domain |
| 2 | 2 | 1 | 1 | SCOP 53623 | MurD-like peptide ligases, catalytic domain |
| 2 | 2 | 2 | 1 | SCOP 48225 | Seven-hairpin glycosidases |
| 2 | 2 | 2 | 1 | SCOP 54616 | DNA-binding domain of Mlu1-box binding protein MBP1 |
| 2 | 2 | 1 | 0 | SCOP 49354 | PapD-like |
| 2 | 2 | 2 | 0 | SCOP 144083 | Magnesium transport protein CorA, transmembrane region |
| 2 | 2 | 1 | 0 | SCOP 160240 | Cation efflux protein cytoplasmic domain-like |
| 2 | 2 | 1 | 1 | SCOP 56327 | LDH C-terminal domain-like |
| 2 | 2 | 2 | 1 | SCOP 117289 | Nucleoporin domain |
| 2 | 2 | 2 | 0 | SCOP 110921 | 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain |
| 2 | 2 | 2 | 1 | SCOP 100879 | Lesion bypass DNA polymerase (Y-family), little finger domain |
| 2 | 2 | 2 | 0 | SCOP 144232 | HIT/MYND zinc finger-like |
| 2 | 2 | 2 | 0 | SCOP 140860 | Pseudo ankyrin repeat-like |
| 2 | 2 | 2 | 0 | SCOP 54160 | Chromo domain-like |
| 2 | 2 | 2 | 0 | SCOP 158702 | Sec63 N-terminal domain-like |
| 2 | 2 | 1 | 0 | SCOP 117892 | Band 7/SPFH domain |
| 2 | 1 | 1 | 0 | SCOP 55124 | Nitrite/Sulfite reductase N-terminal domain-like |
| 2 | 2 | 2 | 0 | SCOP 63748 | Tudor/PWWP/MBT |
| 2 | 2 | 2 | 0 | SCOP 55031 | Bacterial exopeptidase dimerisation domain |
| 2 | 2 | 1 | 1 | SCOP 54675 | Nicotinate/Quinolinate PRTase N-terminal domain-like |
| 2 | 2 | 2 | 0 | SCOP 82708 | R3H domain |
| 2 | 2 | 1 | 0 | SCOP 55271 | DNA repair protein MutS, domain I |
| 2 | 2 | 2 | 1 | SCOP 82061 | BAH domain |
| 2 | 2 | 1 | 1 | SCOP 101152 | Mob1/phocein |
| 2 | 2 | 2 | 1 | SCOP 47396 | Transcription factor IIA (TFIIA), alpha-helical domain |
| 2 | 2 | 2 | 1 | SCOP 56204 | Hect, E3 ligase catalytic domain |
| 2 | 1 | 1 | 0 | SCOP 57924 | Inhibitor of apoptosis (IAP) repeat |
| 2 | 1 | 1 | 0 | SCOP 109905 | Surp module (SWAP domain) |
| 2 | 2 | 1 | 1 | SCOP 88798 | N-terminal, heterodimerisation domain of RBP7 (RpoE) |
| 2 | 2 | 1 | 0 | SCOP 47672 | Transferrin receptor-like dimerisation domain |
| 2 | 2 | 1 | 0 | SCOP 64602 | F1 ATPase inhibitor, IF1, C-terminal domain |
| 2 | 2 | 2 | 0 | SCOP 63491 | BAG domain |
| 2 | 2 | 2 | 0 | SCOP 50911 | Mannose 6-phosphate receptor domain |
| 2 | 2 | 1 | 0 | SCOP 110942 | HSP90 C-terminal domain |
| 2 | 2 | 2 | 0 | SCOP 46609 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| 2 | 2 | 2 | 2 | SCOP 140111 | Endosomal sorting complex assembly domain |
| 2 | 2 | 1 | 1 | SCOP 101489 | Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain |
| 2 | 2 | 2 | 1 | SCOP 50784 | Transcription factor IIA (TFIIA), beta-barrel domain |
| 2 | 2 | 2 | 0 | SCOP 55277 | GYF domain |
| 2 | 2 | 2 | 0 | SCOP 52156 | Initiation factor IF2/eIF5b, domain 3 |
| 2 | 1 | 1 | 0 | SCOP 82615 | Polo-box domain |
| 2 | 2 | 2 | 1 | SCOP 54585 | Cdc48 domain 2-like |
| 2 | 2 | 2 | 0 | SCOP 47005 | Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex |
| 2 | 2 | 2 | 1 | SCOP 160219 | AMPKBI-like |
| 2 | 2 | 2 | 1 | SCOP 81811 | Helical domain of Sec23/24 |
| 2 | 2 | 2 | 1 | SCOP 56553 | Insert subdomain of RNA polymerase alpha subunit |
| 2 | 2 | 1 | 0 | SCOP 101821 | Aminopeptidase/glucanase lid domain |
| 2 | 2 | 1 | 0 | SCOP 57879 | Zinc domain conserved in yeast copper-regulated transcription factors |
| 2 | 1 | 1 | 1 | SCOP 144005 | ORC1-binding domain |
| 1 | 1 | 1 | 1 | SCOP 53167 | Purine and uridine phosphorylases |
| 1 | 1 | 1 | 1 | SCOP 53790 | Tetrapyrrole methylase |
| 1 | 1 | 1 | 1 | SCOP 47973 | Ribosomal protein S7 |
| 1 | 1 | 1 | 0 | SCOP 46911 | Ribosomal protein S18 |
| 1 | 1 | 1 | 1 | SCOP 52141 | Uracil-DNA glycosylase-like |
| 1 | 1 | 1 | 0 | SCOP 57840 | Ribosomal protein L36 |
| 1 | 1 | 1 | 0 | SCOP 64182 | DHH phosphoesterases |
| 1 | 1 | 1 | 0 | SCOP 143034 | L35p-like |
| 1 | 1 | 1 | 0 | SCOP 141091 | L21p-like |
| 1 | 1 | 1 | 0 | SCOP 110324 | Ribosomal L27 protein-like |
| 1 | 1 | 1 | 1 | SCOP 51658 | Xylose isomerase-like |
| 1 | 1 | 1 | 0 | SCOP 143800 | L28p-like |
| 1 | 1 | 1 | 0 | SCOP 47336 | ACP-like |
| 1 | 1 | 1 | 1 | SCOP 53748 | Phosphoglycerate kinase |
| 1 | 1 | 1 | 1 | SCOP 82549 | DAK1/DegV-like |
| 1 | 1 | 1 | 1 | SCOP 75625 | YebC-like |
| 1 | 1 | 1 | 0 | SCOP 52980 | Restriction endonuclease-like |
| 1 | 1 | 1 | 1 | SCOP 52943 | ATP synthase (F1-ATPase), gamma subunit |
| 1 | 1 | 1 | 1 | SCOP 55068 | Peptide methionine sulfoxide reductase |
| 1 | 1 | 1 | 1 | SCOP 51351 | Triosephosphate isomerase (TIM) |
| 1 | 1 | 1 | 0 | SCOP 55194 | Ribosome recycling factor, RRF |
| 1 | 1 | 1 | 0 | SCOP 54565 | Ribosomal protein S16 |
| 1 | 1 | 1 | 0 | SCOP 51316 | Mss4-like |
| 1 | 1 | 1 | 1 | SCOP 51283 | dUTPase-like |
| 1 | 1 | 1 | 1 | SCOP 50715 | Ribosomal protein L25-like |
| 1 | 1 | 1 | 0 | SCOP 54285 | MoaD/ThiS |
| 1 | 1 | 1 | 0 | SCOP 102705 | NIF3 (NGG1p interacting factor 3)-like |
| 1 | 1 | 1 | 0 | SCOP 55205 | EPT/RTPC-like |
| 1 | 1 | 1 | 0 | SCOP 54060 | His-Me finger endonucleases |
| 1 | 1 | 1 | 1 | SCOP 52121 | Lumazine synthase |
| 1 | 1 | 1 | 1 | SCOP 56796 | Dehydroquinate synthase-like |
| 1 | 1 | 1 | 0 | SCOP 54995 | Ribosomal protein S6 |
| 1 | 1 | 1 | 1 | SCOP 55387 | Frataxin/Nqo15-like |
| 1 | 1 | 1 | 0 | SCOP 50985 | RCC1/BLIP-II |
| 1 | 1 | 1 | 1 | SCOP 89957 | MTH1187/YkoF-like |
| 1 | 1 | 1 | 0 | SCOP 52042 | Ribosomal protein L32e |
| 1 | 1 | 1 | 0 | SCOP 63829 | Calcium-dependent phosphotriesterase |
| 1 | 1 | 1 | 0 | SCOP 143744 | GlcG-like |
| 1 | 1 | 1 | 0 | SCOP 141678 | MAL13P1.257-like |
| 1 | 1 | 1 | 0 | SCOP 54762 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| 1 | 1 | 1 | 1 | SCOP 69500 | DTD-like |
| 1 | 1 | 1 | 1 | SCOP 47226 | Histidine-containing phosphotransfer domain, HPT domain |
| 1 | 1 | 1 | 1 | SCOP 102886 | Coproporphyrinogen III oxidase |
| 1 | 1 | 1 | 0 | SCOP 142897 | TFB5-like |
| 1 | 1 | 1 | 0 | SCOP 103456 | Preprotein translocase SecE subunit |
| 1 | 1 | 1 | 1 | SCOP 56815 | Sec1/munc18-like (SM) proteins |
| 1 | 1 | 1 | 1 | SCOP 53590 | Nucleoside hydrolase |
| 1 | 1 | 1 | 1 | SCOP 53328 | Formyltransferase |
| 1 | 1 | 1 | 1 | SCOP 54648 | DLC |
| 1 | 1 | 1 | 1 | SCOP 81524 | 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| 1 | 1 | 1 | 1 | SCOP 52499 | Isochorismatase-like hydrolases |
| 1 | 1 | 1 | 0 | SCOP 111278 | SSo0622-like |
| 1 | 1 | 1 | 0 | SCOP 81411 | Mitochondrial cytochrome c oxidase subunit VIa |
| 1 | 1 | 1 | 0 | SCOP 159468 | AtpF-like |
| 1 | 1 | 1 | 0 | SCOP 47027 | Acyl-CoA binding protein |
| 1 | 1 | 1 | 1 | SCOP 81514 | Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| 1 | 1 | 1 | 0 | SCOP 55144 | LigT-like |
| 1 | 1 | 1 | 0 | SCOP 54506 | Diaminopimelate epimerase-like |
| 1 | 1 | 1 | 1 | SCOP 144210 | Nop10-like SnoRNP |
| 1 | 1 | 1 | 0 | SCOP 69103 | Arp2/3 complex 16 kDa subunit ARPC5 |
| 1 | 1 | 1 | 1 | SCOP 81508 | Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| 1 | 1 | 1 | 0 | SCOP 48662 | Ribosomal protein L39e |
| 1 | 1 | 1 | 0 | SCOP 53639 | AraD/HMP-PK domain-like |
| 1 | 1 | 1 | 1 | SCOP 140959 | Indolic compounds 2,3-dioxygenase-like |
| 1 | 1 | 1 | 1 | SCOP 51126 | Pectin lyase-like |
| 1 | 1 | 1 | 1 | SCOP 54919 | Nucleoside diphosphate kinase, NDK |
| 1 | 1 | 1 | 1 | SCOP 55781 | GAF domain-like |
| 1 | 1 | 1 | 1 | SCOP 118203 | Vacuolar ATP synthase subunit C |
| 1 | 1 | 1 | 0 | SCOP 161219 | CHY zinc finger-like |
| 1 | 1 | 1 | 1 | SCOP 116942 | RNA-binding protein She2p |
| 1 | 1 | 1 | 1 | SCOP 48113 | Heme-dependent peroxidases |
| 1 | 1 | 1 | 0 | SCOP 47694 | Cytochrome c oxidase subunit h |
| 1 | 1 | 1 | 0 | SCOP 49777 | PEBP-like |
| 1 | 1 | 1 | 1 | SCOP 69060 | Arp2/3 complex 21 kDa subunit ARPC3 |
| 1 | 1 | 1 | 0 | SCOP 81427 | Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) |
| 1 | 1 | 1 | 0 | SCOP 103486 | V-type ATP synthase subunit C |
| 1 | 1 | 1 | 0 | SCOP 143870 | PF0523-like |
| 1 | 1 | 1 | 1 | SCOP 89975 | Hypothetical protein Yml108w |
| 1 | 1 | 1 | 1 | SCOP 53056 | beta-carbonic anhydrase, cab |
| 1 | 1 | 1 | 1 | SCOP 56529 | FAH |
| 1 | 1 | 1 | 0 | SCOP 103111 | Activator of Hsp90 ATPase, Aha1 |
| 1 | 1 | 1 | 0 | SCOP 55961 | Bet v1-like |
| 1 | 1 | 1 | 0 | SCOP 56399 | ADP-ribosylation |
| 1 | 1 | 1 | 0 | SCOP 58113 | Apolipoprotein A-I |
| 1 | 1 | 1 | 1 | SCOP 55770 | Profilin (actin-binding protein) |
| 1 | 1 | 1 | 0 | SCOP 52266 | SGNH hydrolase |
| 1 | 1 | 1 | 1 | SCOP 46924 | RNA polymerase subunit RPB10 |
| 1 | 1 | 1 | 1 | SCOP 46988 | Tubulin chaperone cofactor A |
| 1 | 1 | 1 | 0 | SCOP 69618 | HemD-like |
| 1 | 1 | 1 | 0 | SCOP 143447 | AMMECR1-like |
| 1 | 1 | 1 | 0 | SCOP 48690 | Epsilon subunit of mitochondrial F1F0-ATP synthase |
| 1 | 1 | 1 | 1 | SCOP 103378 | 2-methylcitrate dehydratase PrpD |
| 1 | 1 | 1 | 1 | SCOP 55909 | Pentein |
| 1 | 1 | 1 | 1 | SCOP 52788 | Phosphotyrosine protein phosphatases I |
| 1 | 1 | 1 | 1 | SCOP 63562 | RPB6/omega subunit-like |
| 1 | 1 | 1 | 1 | SCOP 55620 | Tetrahydrobiopterin biosynthesis enzymes-like |
| 1 | 1 | 1 | 0 | SCOP 55931 | Glutamine synthetase/guanido kinase |
| 1 | 1 | 1 | 0 | SCOP 46458 | Globin-like |
| 1 | 1 | 1 | 1 | SCOP 101546 | ASF1-like |
| 1 | 1 | 1 | 1 | SCOP 51717 | Dihydropteroate synthetase-like |
| 1 | 1 | 1 | 1 | SCOP 53795 | PEP carboxykinase-like |
| 1 | 1 | 1 | 1 | SCOP 51998 | PFL-like glycyl radical enzymes |
| 1 | 1 | 1 | 1 | SCOP 55724 | Mog1p/PsbP-like |
| 1 | 1 | 1 | 0 | SCOP 50494 | Trypsin-like serine proteases |
| 1 | 1 | 1 | 1 | SCOP 52255 | N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) |
| 1 | 1 | 1 | 0 | SCOP 47413 | lambda repressor-like DNA-binding domains |
| 1 | 1 | 1 | 1 | SCOP 56266 | DmpA/ArgJ-like |
| 1 | 1 | 1 | 0 | SCOP 82771 | GIY-YIG endonuclease |
| 1 | 1 | 1 | 0 | SCOP 82697 | PurS-like |
| 1 | 1 | 1 | 1 | SCOP 56349 | DNA breaking-rejoining enzymes |
| 1 | 1 | 1 | 1 | SCOP 50022 | ISP domain |
| 1 | 1 | 1 | 0 | SCOP 55083 | 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |
| 1 | 1 | 1 | 0 | SCOP 101744 | Rof/RNase P subunit-like |
| 1 | 1 | 1 | 0 | SCOP 54447 | ssDNA-binding transcriptional regulator domain |
| 1 | 1 | 1 | 1 | SCOP 50692 | ADC-like |
| 1 | 1 | 1 | 0 | SCOP 55154 | CYTH-like phosphatases |
| 1 | 1 | 1 | 0 | SCOP 54913 | GlnB-like |
| 1 | 1 | 1 | 0 | SCOP 53218 | Molybdenum cofactor biosynthesis proteins |
| 1 | 1 | 1 | 0 | SCOP 54736 | ClpS-like |
| 1 | 1 | 1 | 1 | SCOP 143081 | BB1717-like |
| 1 | 1 | 1 | 1 | SCOP 51391 | Thiamin phosphate synthase |
| 1 | 1 | 1 | 1 | SCOP 48173 | Cryptochrome/photolyase FAD-binding domain |
| 1 | 1 | 1 | 0 | SCOP 52425 | Cryptochrome/photolyase, N-terminal domain |
| 1 | 1 | 1 | 1 | SCOP 48600 | Chorismate mutase II |
| 1 | 1 | 1 | 0 | SCOP 109910 | YgfY-like |
| 1 | 1 | 1 | 0 | SCOP 110916 | Peptidyl-tRNA hydrolase domain-like |
| 1 | 1 | 1 | 0 | SCOP 51338 | Composite domain of metallo-dependent hydrolases |
| 1 | 1 | 1 | 1 | SCOP 56645 | Acyl-CoA dehydrogenase NM domain-like |
| 1 | 1 | 1 | 0 | SCOP 102588 | LmbE-like |
| 1 | 1 | 1 | 0 | SCOP 160909 | ATP12-like |
| 1 | 1 | 1 | 0 | SCOP 56747 | Prim-pol domain |
| 1 | 1 | 1 | 1 | SCOP 54814 | Prokaryotic type KH domain (KH-domain type II) |
| 1 | 1 | 1 | 0 | SCOP 53323 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain III |
| 1 | 1 | 1 | 0 | SCOP 57802 | Rubredoxin-like |
| 1 | 1 | 1 | 0 | SCOP 55785 | PYP-like sensor domain (PAS domain) |
| 1 | 1 | 1 | 0 | SCOP 142338 | CofD-like |
| 1 | 1 | 1 | 0 | SCOP 101473 | DhaL-like |
| 1 | 1 | 1 | 0 | SCOP 47781 | RuvA domain 2-like |
| 1 | 1 | 1 | 1 | SCOP 75005 | Arabinanase/levansucrase/invertase |
| 1 | 1 | 1 | 0 | SCOP 54626 | Chalcone isomerase |
| 1 | 1 | 1 | 0 | SCOP 89562 | RraA-like |
| 1 | 1 | 1 | 0 | SCOP 56726 | DNA topoisomerase IV, alpha subunit |
| 1 | 1 | 1 | 0 | SCOP 160631 | SMI1/KNR4-like |
| 1 | 1 | 1 | 0 | SCOP 111321 | AF1104-like |
| 1 | 1 | 1 | 0 | SCOP 160350 | Rnp2-like |
| 1 | 1 | 1 | 1 | SCOP 54984 | eEF-1beta-like |
| 1 | 1 | 1 | 1 | SCOP 46548 | alpha-helical ferredoxin |
| 1 | 1 | 1 | 1 | SCOP 55287 | RPB5-like RNA polymerase subunit |
| 1 | 1 | 1 | 0 | SCOP 69695 | SRP19 |
| 1 | 1 | 1 | 0 | SCOP 49401 | Bacterial adhesins |
| 1 | 1 | 1 | 1 | SCOP 55895 | Ribonuclease Rh-like |
| 1 | 1 | 1 | 0 | SCOP 50199 | Staphylococcal nuclease |
| 1 | 1 | 1 | 0 | SCOP 158832 | Tex N-terminal region-like |
| 1 | 1 | 1 | 0 | SCOP 50156 | PDZ domain-like |
| 1 | 1 | 1 | 0 | SCOP 81923 | Double Clp-N motif |
| 1 | 1 | 1 | 1 | SCOP 82114 | Riboflavin kinase-like |
| 1 | 1 | 1 | 1 | SCOP 102645 | CoaB-like |
| 1 | 1 | 1 | 0 | SCOP 54821 | Ribosomal protein S3 C-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 47384 | Homodimeric domain of signal transducing histidine kinase |
| 1 | 1 | 1 | 1 | SCOP 56719 | Type II DNA topoisomerase |
| 1 | 1 | 1 | 0 | SCOP 50965 | Galactose oxidase, central domain |
| 1 | 1 | 1 | 0 | SCOP 118116 | DNA mismatch repair protein MutL |
| 1 | 1 | 1 | 0 | SCOP 51344 | Epsilon subunit of F1F0-ATP synthase N-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 52129 | Caspase-like |
| 1 | 1 | 1 | 0 | SCOP 144206 | NOB1 zinc finger-like |
| 1 | 1 | 1 | 1 | SCOP 55816 | 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |
| 1 | 1 | 1 | 1 | SCOP 68923 | PEP carboxykinase N-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 55190 | Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |
| 1 | 1 | 1 | 0 | SCOP 56037 | PheT/TilS domain |
| 1 | 1 | 1 | 1 | SCOP 52418 | Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |
| 1 | 1 | 1 | 0 | SCOP 58014 | Coiled-coil domain of nucleotide exchange factor GrpE |
| 1 | 1 | 1 | 1 | SCOP 63999 | Thiamin pyrophosphokinase, catalytic domain |
| 1 | 1 | 1 | 1 | SCOP 53671 | Aspartate/ornithine carbamoyltransferase |
| 1 | 1 | 1 | 1 | SCOP 50621 | Alanine racemase C-terminal domain-like |
| 1 | 1 | 1 | 0 | SCOP 48163 | An anticodon-binding domain of class I aminoacyl-tRNA synthetases |
| 1 | 1 | 1 | 1 | SCOP 110111 | Ctag/Cox11 |
| 1 | 1 | 1 | 0 | SCOP 143968 | UbiD C-terminal domain-like |
| 1 | 1 | 1 | 1 | SCOP 110019 | ERO1-like |
| 1 | 1 | 1 | 1 | SCOP 52021 | Carbamoyl phosphate synthetase, small subunit N-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 81891 | Poly A polymerase C-terminal region-like |
| 1 | 1 | 1 | 0 | SCOP 53920 | Fe-only hydrogenase |
| 1 | 1 | 1 | 1 | SCOP 54810 | GMP synthetase C-terminal dimerisation domain |
| 1 | 1 | 1 | 0 | SCOP 81660 | Metal cation-transporting ATPase, ATP-binding domain N |
| 1 | 1 | 1 | 0 | SCOP 46977 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 47364 | Domain of the SRP/SRP receptor G-proteins |
| 1 | 1 | 1 | 0 | SCOP 48300 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| 1 | 1 | 1 | 1 | SCOP 90209 | Ran binding protein zinc finger-like |
| 1 | 1 | 1 | 0 | SCOP 51101 | Mannose-binding lectins |
| 1 | 1 | 1 | 0 | SCOP 90002 | Hypothetical protein YjiA, C-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 47144 | HSC20 (HSCB), C-terminal oligomerisation domain |
| 1 | 1 | 1 | 0 | SCOP 110836 | Hypothetical protein SAV1430 |
| 1 | 1 | 1 | 0 | SCOP 75689 | Zinc-binding domain of translation initiation factor 2 beta |
| 1 | 1 | 1 | 0 | SCOP 100966 | Translation initiation factor 2 beta, aIF2beta, N-terminal domain |
| 1 | 1 | 1 | 1 | SCOP 101278 | N-terminal domain of adenylylcyclase associated protein, CAP |
| 1 | 1 | 1 | 0 | SCOP 118310 | AN1-like Zinc finger |
| 1 | 1 | 1 | 0 | SCOP 55550 | SH2 domain |
| 1 | 1 | 1 | 1 | SCOP 55957 | Phosphoglucomutase, C-terminal domain |
| 1 | 1 | 1 | 1 | SCOP 143975 | IlvD/EDD N-terminal domain-like |
| 1 | 1 | 1 | 1 | SCOP 144284 | Sec2 N-terminal region |
| 1 | 1 | 1 | 0 | SCOP 54991 | Anticodon-binding domain of PheRS |
| 1 | 1 | 1 | 1 | SCOP 116742 | eIF2alpha middle domain-like |
| 1 | 1 | 1 | 0 | SCOP 47928 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| 1 | 1 | 1 | 0 | SCOP 54452 | MHC antigen-recognition domain |
| 1 | 1 | 1 | 1 | SCOP 49417 | p53-like transcription factors |
| 1 | 1 | 1 | 1 | SCOP 54277 | CAD & PB1 domains |
| 1 | 1 | 1 | 1 | SCOP 48445 | 14-3-3 protein |
| 1 | 1 | 1 | 1 | SCOP 69000 | FAD-dependent thiol oxidase |
| 1 | 1 | 1 | 0 | SCOP 47895 | Transducin (alpha subunit), insertion domain |
| 1 | 1 | 1 | 1 | SCOP 47938 | Functional domain of the splicing factor Prp18 |
| 1 | 1 | 1 | 0 | SCOP 57889 | Cysteine-rich domain |
| 1 | 1 | 1 | 1 | SCOP 140984 | PTPA-like |
| 1 | 1 | 1 | 0 | SCOP 116846 | MIT domain |
| 1 | 1 | 1 | 0 | SCOP 48097 | Regulator of G-protein signaling, RGS |
| 1 | 1 | 1 | 0 | SCOP 82051 | Obg GTP-binding protein N-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 69012 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| 1 | 1 | 1 | 1 | SCOP 55481 | N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 |
| 1 | 1 | 1 | 0 | SCOP 50084 | Myosin S1 fragment, N-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 161065 | ATP synthase D chain-like |
| 1 | 1 | 1 | 0 | SCOP 88688 | Families 57/38 glycoside transferase middle domain |
| 1 | 1 | 1 | 0 | SCOP 48479 | Cytochrome c oxidase subunit E |
| 1 | 1 | 1 | 0 | SCOP 54368 | Glutamine synthetase, N-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 109885 | I/LWEQ domain |
| 1 | 1 | 1 | 0 | SCOP 109925 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 57774 | Microbial and mitochondrial ADK, insert "zinc finger" domain |
| 1 | 1 | 1 | 0 | SCOP 54529 | Mitochondrial glycoprotein MAM33-like |
| 1 | 1 | 1 | 0 | SCOP 161060 | ATP synthase B chain-like |
| 1 | 1 | 1 | 1 | SCOP 117018 | ATP-dependent DNA ligase DNA-binding domain |
| 1 | 1 | 1 | 1 | SCOP 110993 | eIF-2-alpha, C-terminal domain |
| 1 | 1 | 1 | 1 | SCOP 89942 | eEF1-gamma domain |
| 1 | 1 | 1 | 0 | SCOP 103243 | KA1-like |
| 1 | 1 | 1 | 1 | SCOP 75615 | Siroheme synthase middle domains-like |
| 1 | 1 | 1 | 1 | SCOP 90242 | Dimerization motif of sir4 |
| 1 | 1 | 1 | 0 | SCOP 48168 | R1 subunit of ribonucleotide reductase, N-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 82215 | C-terminal autoproteolytic domain of nucleoporin nup98 |
| 1 | 1 | 1 | 1 | SCOP 53036 | Eukaryotic RPB5 N-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 109715 | DEK C-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 47157 | Mitochondrial import receptor subunit Tom20 |
| 1 | 1 | 1 | 0 | SCOP 50916 | Rap30/74 interaction domains |
| 1 | 1 | 1 | 0 | SCOP 54556 | Chitinase insertion domain |
| 1 | 1 | 1 | 0 | SCOP 101391 | Hsp90 co-chaperone CDC37 |
| 1 | 1 | 1 | 1 | SCOP 81382 | Skp1 dimerisation domain-like |
| 1 | 1 | 1 | 0 | SCOP 46942 | Elongation factor TFIIS domain 2 |
| 1 | 1 | 1 | 1 | SCOP 140427 | VPS28 C-terminal domain-like |
| 1 | 1 | 1 | 1 | SCOP 159065 | Dom34/Pelota N-terminal domain-like |
| 1 | 1 | 1 | 1 | SCOP 69340 | C-terminal domain of adenylylcyclase associated protein |
| 1 | 1 | 1 | 1 | SCOP 88802 | Pre-PUA domain |
| 1 | 1 | 1 | 1 | SCOP 56741 | Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment |
| 1 | 1 | 1 | 0 | SCOP 69848 | LCCL domain |
| 1 | 1 | 1 | 1 | SCOP 63862 | Thiamin pyrophosphokinase, substrate-binding domain |
| 1 | 1 | 1 | 0 | SCOP 55711 | Subdomain of clathrin and coatomer appendage domain |
| 1 | 1 | 1 | 1 | SCOP 55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 140612 | EB1 dimerisation domain-like |
| 1 | 1 | 1 | 0 | SCOP 102860 | mRNA decapping enzyme DcpS N-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 51064 | Head domain of nucleotide exchange factor GrpE |
| 1 | 1 | 1 | 0 | SCOP 75445 | D-ribose-5-phosphate isomerase (RpiA), lid domain |
| 1 | 1 | 1 | 0 | SCOP 101790 | Aminomethyltransferase beta-barrel domain |
| 1 | 1 | 1 | 1 | SCOP 101353 | Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) |
| 1 | 1 | 1 | 1 | SCOP 81496 | Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor |
| 1 | 1 | 1 | 1 | SCOP 81502 | ISP transmembrane anchor |
| 1 | 1 | 1 | 0 | SCOP 160467 | PH0987 N-terminal domain-like |
| 1 | 1 | 1 | 0 | SCOP 47802 | DNA polymerase beta, N-terminal domain-like |
| 1 | 1 | 1 | 0 | SCOP 109728 | Hypothetical protein AF0491, middle domain |
| 1 | 1 | 1 | 0 | SCOP 109736 | FGAM synthase PurL, linker domain |
| 1 | 1 | 1 | 1 | SCOP 101238 | XPC-binding domain |
| 1 | 1 | 1 | 0 | SCOP 57770 | Methionyl-tRNA synthetase (MetRS), Zn-domain |
| 1 | 1 | 1 | 0 | SCOP 140125 | Rabenosyn-5 Rab-binding domain-like |
| 1 | 1 | 1 | 0 | SCOP 48686 | Proteinase A inhibitor IA3 |
| 1 | 1 | 1 | 1 | SCOP 143026 | Kinetochore globular domain |
