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Malus x domestica superfamily assignments

Taxonomy
Taxonomy browser entry

Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus; Malus domestica

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 63541 total
35959 (57 %) with assignment
372 average length
41 % amino acid coverage
Domains: 51058 total
967 unique superfamilies
774 unique families
273 average length
52.8 average superfamily size
98 % formed by duplication
Domain combinations: 1726 domain pairs
6436 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
3068 3001 374 4 SCOP 56112 Protein kinase-like (PK-like)
3041 2318 386 2 SCOP 52058 L domain-like
2773 2571 548 11 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
996 951 142 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
963 888 155 3 SCOP 57850 RING/U-box
863 729 157 8 SCOP 48371 ARM repeat
754 710 75 2 SCOP 46689 Homeodomain-like
741 667 199 0 SCOP 52047 RNI-like
726 593 140 2 SCOP 48452 TPR-like
724 533 140 1 SCOP 54928 RNA-binding domain, RBD
684 650 43 1 SCOP 48264 Cytochrome P450
681 665 74 8 SCOP 53474 alpha/beta-Hydrolases
650 633 131 0 SCOP 81383 F-box domain
628 603 34 5 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
618 560 68 16 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
606 588 131 1 SCOP 50978 WD40 repeat-like
562 548 91 8 SCOP 51445 (Trans)glycosidases
548 478 96 5 SCOP 52833 Thioredoxin-like
511 474 37 0 SCOP 103473 MFS general substrate transporter
506 498 134 4 SCOP 46785 "Winged helix" DNA-binding domain
452 433 103 0 SCOP 52200 Toll/Interleukin receptor TIR domain
431 410 32 2 SCOP 51197 Clavaminate synthase-like
398 248 35 2 SCOP 49503 Cupredoxins
393 373 68 1 SCOP 47473 EF-hand
356 335 72 1 SCOP 48403 Ankyrin repeat
353 306 25 1 SCOP 54171 DNA-binding domain
352 282 91 6 SCOP 50249 Nucleic acid-binding proteins
348 299 55 6 SCOP 51905 FAD/NAD(P)-binding domain
347 271 80 3 SCOP 54236 Ubiquitin-like
345 339 86 7 SCOP 56784 HAD-like
332 325 86 4 SCOP 53098 Ribonuclease H-like
326 293 41 0 SCOP 51110 alpha-D-mannose-specific plant lectins
314 300 49 9 SCOP 54001 Cysteine proteinases
308 302 29 3 SCOP 51126 Pectin lyase-like
281 239 36 1 SCOP 50129 GroES-like
275 273 19 0 SCOP 47459 HLH, helix-loop-helix DNA-binding domain
269 169 46 4 SCOP 53067 Actin-like ATPase domain
266 259 29 1 SCOP 101941 NAC domain
265 209 41 0 SCOP 57667 beta-beta-alpha zinc fingers
260 175 51 1 SCOP 49562 C2 domain (Calcium/lipid-binding domain, CaLB)
257 251 38 5 SCOP 53448 Nucleotide-diphospho-sugar transferases
239 227 34 5 SCOP 53383 PLP-dependent transferases
237 212 25 2 SCOP 55961 Bet v1-like
230 225 59 0 SCOP 46565 Chaperone J-domain
223 219 35 3 SCOP 49899 Concanavalin A-like lectins/glucanases
208 204 20 1 SCOP 48113 Heme-dependent peroxidases
202 130 29 1 SCOP 47954 Cyclin-like
195 168 71 1 SCOP 57903 FYVE/PHD zinc finger
192 105 40 0 SCOP 90229 CCCH zinc finger
191 190 19 2 SCOP 47113 Histone-fold
188 146 35 1 SCOP 101936 DNA-binding pseudobarrel domain
184 124 23 2 SCOP 53901 Thiolase-like
181 179 29 1 SCOP 81606 PP2C-like
174 165 19 1 SCOP 103506 Mitochondrial carrier
174 169 43 1 SCOP 54695 POZ domain
171 92 38 1 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
167 163 20 1 SCOP 52743 Subtilisin-like
167 140 16 1 SCOP 118290 WRKY DNA-binding domain
166 127 43 0 SCOP 57756 Retrovirus zinc finger-like domains
163 106 26 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
162 133 21 3 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
161 151 35 4 SCOP 56300 Metallo-dependent phosphatases
159 136 36 0 SCOP 81901 HCP-like
156 103 28 0 SCOP 90123 ABC transporter transmembrane region
154 114 31 1 SCOP 49599 TRAF domain-like
152 127 30 0 SCOP 55008 HMA, heavy metal-associated domain
149 146 17 2 SCOP 54495 UBC-like
149 140 34 1 SCOP 47616 GST C-terminal domain-like
148 144 22 1 SCOP 101148 Plant invertase/pectin methylesterase inhibitor
146 144 24 3 SCOP 49764 HSP20-like chaperones
144 144 15 0 SCOP 55455 SRF-like
142 131 58 8 SCOP 54211 Ribosomal protein S5 domain 2-like
142 142 34 0 SCOP 54277 CAD & PB1 domains
139 134 13 1 SCOP 47699 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
137 128 27 4 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
137 134 38 1 SCOP 81665 Calcium ATPase, transmembrane domain M
136 126 29 1 SCOP 51206 cAMP-binding domain-like
135 135 29 3 SCOP 52402 Adenine nucleotide alpha hydrolases-like
135 115 22 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
133 120 17 5 SCOP 51182 RmlC-like cupins
133 114 32 0 SCOP 81324 Voltage-gated potassium channels
125 117 26 4 SCOP 52096 ClpP/crotonase
121 112 17 3 SCOP 48576 Terpenoid synthases
119 81 23 6 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
119 60 36 1 SCOP 55021 ACT-like
119 115 26 0 SCOP 117281 Kelch motif
116 107 34 4 SCOP 52374 Nucleotidylyl transferase
116 113 18 1 SCOP 56801 Acetyl-CoA synthetase-like
115 114 9 0 SCOP 57959 Leucine zipper domain
114 84 33 3 SCOP 49785 Galactose-binding domain-like
112 108 47 3 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
110 105 15 1 SCOP 51430 NAD(P)-linked oxidoreductase
109 107 9 1 SCOP 52266 SGNH hydrolase
108 103 40 2 SCOP 55681 Class II aaRS and biotin synthetases
107 107 31 1 SCOP 81653 Calcium ATPase, transduction domain A
105 92 29 3 SCOP 64356 SNARE-like
102 99 18 1 SCOP 50104 Translation proteins SH3-like domain
100 89 21 2 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
98 92 27 2 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
98 95 21 1 SCOP 50630 Acid proteases
97 96 9 2 SCOP 50685 Barwin-like endoglucanases
97 77 32 0 SCOP 54631 CBS-domain pair
97 97 51 2 SCOP 50729 PH domain-like
95 91 36 2 SCOP 50447 Translation proteins
94 92 23 4 SCOP 53187 Zn-dependent exopeptidases
94 92 42 2 SCOP 81296 E set domains
91 88 31 2 SCOP 82199 SET domain
89 89 14 1 SCOP 103511 Chlorophyll a-b binding protein
86 84 6 1 SCOP 81338 Aquaporin-like
86 86 23 1 SCOP 50891 Cyclophilin-like
85 37 19 1 SCOP 63411 LuxS/MPP-like metallohydrolase
84 84 10 2 SCOP 48208 Six-hairpin glycosidases
84 75 38 0 SCOP 46934 UBA-like
84 82 21 1 SCOP 74788 Cullin repeat-like
83 81 28 1 SCOP 53300 vWA-like
83 43 22 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
82 80 41 3 SCOP 56672 DNA/RNA polymerases
82 77 26 1 SCOP 52172 CheY-like
81 76 19 5 SCOP 51569 Aldolase
79 74 12 2 SCOP 53720 ALDH-like
75 54 12 2 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
75 74 9 1 SCOP 51395 FMN-linked oxidoreductases
74 72 21 6 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
74 69 30 3 SCOP 52799 (Phosphotyrosine protein) phosphatases II
74 43 28 0 SCOP 54768 dsRNA-binding domain-like
73 70 16 1 SCOP 55811 Nudix
73 71 30 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
72 71 18 1 SCOP 53850 Periplasmic binding protein-like II
71 66 28 4 SCOP 56059 Glutathione synthetase ATP-binding domain-like
70 70 21 1 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
69 67 24 2 SCOP 74650 Galactose mutarotase-like
68 54 25 0 SCOP 50985 RCC1/BLIP-II
68 67 18 3 SCOP 54373 FAD-linked reductases, C-terminal domain
67 54 17 1 SCOP 54534 FKBP-like
67 65 10 2 SCOP 52151 FabD/lysophospholipase-like
67 67 20 3 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
67 67 13 1 SCOP 47661 t-snare proteins
67 40 22 0 SCOP 90209 Ran binding protein zinc finger-like
67 66 24 1 SCOP 52087 CRAL/TRIO domain
67 66 12 1 SCOP 48464 ENTH/VHS domain
66 61 15 1 SCOP 49870 Osmotin, thaumatin-like protein
65 61 14 0 SCOP 58038 SNARE fusion complex
65 65 15 1 SCOP 52490 Tubulin nucleotide-binding domain-like
62 61 11 1 SCOP 50182 Sm-like ribonucleoproteins
61 61 21 1 SCOP 48592 GroEL equatorial domain-like
60 60 5 0 SCOP 49590 PHL pollen allergen
59 38 16 2 SCOP 55753 Actin depolymerizing proteins
59 57 11 0 SCOP 53822 Periplasmic binding protein-like I
59 44 12 0 SCOP 82153 FAS1 domain
59 59 17 1 SCOP 47370 Bromodomain
58 50 16 2 SCOP 53271 PRTase-like
58 54 22 3 SCOP 51161 Trimeric LpxA-like enzymes
57 54 17 2 SCOP 52317 Class I glutamine amidotransferase-like
57 57 20 0 SCOP 46938 CRAL/TRIO N-terminal domain
56 55 11 3 SCOP 53613 Ribokinase-like
56 36 20 1 SCOP 54980 EF-G C-terminal domain-like
56 41 26 0 SCOP 52113 BRCT domain
55 54 8 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
55 54 18 1 SCOP 54427 NTF2-like
55 52 27 3 SCOP 81301 Nucleotidyltransferase
55 54 6 0 SCOP 117856 AF0104/ALDC/Ptd012-like
55 55 23 3 SCOP 88697 PUA domain-like
55 55 22 1 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
55 32 10 1 SCOP 47923 Ypt/Rab-GAP domain of gyp1p
55 55 11 1 SCOP 101447 Formin homology 2 domain (FH2 domain)
54 54 18 3 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
53 53 20 0 SCOP 50965 Galactose oxidase, central domain
53 53 20 2 SCOP 52029 GroEL apical domain-like
53 51 13 1 SCOP 49723 Lipase/lipooxygenase domain (PLAT/LH2 domain)
53 49 8 1 SCOP 141562 At5g01610-like
52 43 14 2 SCOP 51695 PLC-like phosphodiesterases
52 48 10 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
52 45 14 1 SCOP 48484 Lipoxigenase
52 47 23 3 SCOP 63380 Riboflavin synthase domain-like
50 48 11 1 SCOP 55856 Cytochrome b5-like heme/steroid binding domain
50 47 13 1 SCOP 52279 Beta-D-glucan exohydrolase, C-terminal domain
50 50 16 1 SCOP 52025 PA domain
49 44 13 2 SCOP 102114 Radical SAM enzymes
49 45 8 1 SCOP 117070 LEA14-like
49 49 17 4 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
49 48 21 0 SCOP 57863 ArfGap/RecO-like zinc finger
48 47 18 1 SCOP 51230 Single hybrid motif
48 27 17 1 SCOP 55785 PYP-like sensor domain (PAS domain)
48 47 21 2 SCOP 56176 FAD-binding/transporter-associated domain-like
48 41 21 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
48 47 10 1 SCOP 48445 14-3-3 protein
48 34 14 0 SCOP 57889 Cysteine-rich domain
47 44 14 1 SCOP 52777 CoA-dependent acyltransferases
46 43 17 1 SCOP 47095 HMG-box
46 38 8 2 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
46 42 15 0 SCOP 54849 GroEL-intermediate domain like
45 24 10 0 SCOP 75471 YhbY-like
45 44 11 1 SCOP 55307 Tubulin C-terminal domain-like
44 43 12 1 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
44 43 13 0 SCOP 144091 Rhomboid-like
44 25 17 1 SCOP 56024 Phospholipase D/nuclease
44 42 10 1 SCOP 103612 SBT domain
43 43 14 0 SCOP 57829 Zn-binding ribosomal proteins
43 42 9 2 SCOP 54518 Tubby C-terminal domain-like
43 43 5 1 SCOP 56574 Serpins
43 39 7 0 SCOP 54403 Cystatin/monellin
43 43 27 0 SCOP 63748 Tudor/PWWP/MBT
42 42 13 1 SCOP 54292 2Fe-2S ferredoxin-like
42 39 14 2 SCOP 56281 Metallo-hydrolase/oxidoreductase
42 40 13 2 SCOP 55315 L30e-like
42 21 7 1 SCOP 55973 S-adenosylmethionine synthetase
42 41 21 0 SCOP 51011 Glycosyl hydrolase domain
41 39 16 2 SCOP 53137 Translational machinery components
41 39 16 2 SCOP 52218 Flavoproteins
40 38 6 2 SCOP 47240 Ferritin-like
40 39 13 2 SCOP 100950 NagB/RpiA/CoA transferase-like
40 38 9 1 SCOP 56655 Carbohydrate phosphatase
40 40 12 1 SCOP 81340 Clc chloride channel
40 29 9 1 SCOP 54626 Chalcone isomerase
40 31 15 1 SCOP 47592 SWIB/MDM2 domain
39 35 9 1 SCOP 55120 Pseudouridine synthase
39 38 11 1 SCOP 49363 Purple acid phosphatase, N-terminal domain
38 37 12 1 SCOP 56399 ADP-ribosylation
38 38 14 1 SCOP 50494 Trypsin-like serine proteases
38 38 5 1 SCOP 47874 Annexin
37 37 8 5 SCOP 51366 Ribulose-phoshate binding barrel
37 35 16 0 SCOP 50156 PDZ domain-like
37 26 8 1 SCOP 50382 Agglutinin
36 34 12 0 SCOP 57997 Tropomyosin
36 33 16 2 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
36 11 10 0 SCOP 81698 FF domain
35 34 11 1 SCOP 56322 ADC synthase
35 35 12 0 SCOP 161111 Cation efflux protein transmembrane domain-like
35 34 10 3 SCOP 52467 DHS-like NAD/FAD-binding domain
35 35 12 1 SCOP 49879 SMAD/FHA domain
35 31 8 0 SCOP 118310 AN1-like Zinc finger
35 33 19 1 SCOP 101690 PAZ domain
35 34 8 0 SCOP 89009 GAT-like domain
34 31 8 3 SCOP 52821 Rhodanese/Cell cycle control phosphatase
34 33 8 2 SCOP 48150 DNA-glycosylase
34 33 14 2 SCOP 109604 HD-domain/PDEase-like
34 29 17 1 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
33 30 13 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
33 32 13 1 SCOP 55920 Creatinase/aminopeptidase
33 31 14 2 SCOP 56104 SAICAR synthase-like
33 31 8 2 SCOP 53955 Lysozyme-like
33 33 13 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
33 28 10 0 SCOP 54106 LysM domain
33 23 10 0 SCOP 82185 Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
33 27 14 0 SCOP 51045 WW domain
32 31 10 1 SCOP 53784 Phosphofructokinase
32 32 14 1 SCOP 88723 PIN domain-like
32 32 8 1 SCOP 50022 ISP domain
32 29 14 0 SCOP 82171 DPP6 N-terminal domain-like
32 32 13 0 SCOP 81923 Double Clp-N motif
32 32 22 0 SCOP 81995 beta-sandwich domain of Sec23/24
32 31 14 1 SCOP 81631 PAP/OAS1 substrate-binding domain
32 30 7 0 SCOP 57095 Scorpion toxin-like
31 29 8 2 SCOP 75217 alpha/beta knot
31 31 5 2 SCOP 53254 Phosphoglycerate mutase-like
31 27 9 1 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
31 22 13 1 SCOP 55781 GAF domain-like
31 27 13 1 SCOP 47576 Calponin-homology domain, CH-domain
31 27 17 0 SCOP 49452 Starch-binding domain-like
31 31 9 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
31 31 16 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
30 30 6 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
30 30 8 1 SCOP 52768 Arginase/deacetylase
30 30 12 2 SCOP 56645 Acyl-CoA dehydrogenase NM domain-like
30 30 9 1 SCOP 81382 Skp1 dimerisation domain-like
29 29 8 0 SCOP 47336 ACP-like
29 29 4 1 SCOP 55724 Mog1p/PsbP-like
28 26 10 2 SCOP 53927 Cytidine deaminase-like
28 28 14 2 SCOP 53633 Carbamate kinase-like
28 25 16 0 SCOP 57783 Zinc beta-ribbon
28 20 10 1 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
28 28 14 1 SCOP 111321 AF1104-like
28 28 16 1 SCOP 55186 ThrRS/AlaRS common domain
28 20 10 2 SCOP 47203 Acyl-CoA dehydrogenase C-terminal domain-like
28 28 18 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
28 28 9 0 SCOP 52935 PK C-terminal domain-like
28 24 11 1 SCOP 52440 PreATP-grasp domain
28 27 10 1 SCOP 140990 FtsH protease domain-like
28 28 13 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
28 11 7 1 SCOP 53738 Phosphoglucomutase, first 3 domains
27 26 6 1 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
27 25 8 2 SCOP 48557 L-aspartase-like
27 27 8 0 SCOP 63829 Calcium-dependent phosphotriesterase
27 19 6 2 SCOP 54506 Diaminopimelate epimerase-like
27 26 12 1 SCOP 56719 Type II DNA topoisomerase
27 27 5 0 SCOP 117892 Band 7/SPFH domain
27 23 12 0 SCOP 55666 Ribonuclease PH domain 2-like
26 26 12 5 SCOP 51556 Metallo-dependent hydrolases
26 26 13 1 SCOP 52954 Class II aaRS ABD-related
26 26 6 1 SCOP 102405 MCP/YpsA-like
26 26 11 1 SCOP 50692 ADC-like
26 20 14 0 SCOP 69065 RNase III domain-like
26 26 6 1 SCOP 56327 LDH C-terminal domain-like
26 26 14 0 SCOP 144232 HIT/MYND zinc finger-like
25 25 5 1 SCOP 54686 Ribosomal protein L16p/L10e
25 25 9 0 SCOP 55174 Alpha-L RNA-binding motif
25 24 7 0 SCOP 141571 Pentapeptide repeat-like
25 23 7 0 SCOP 101386 all-alpha NTP pyrophosphatases
25 24 7 1 SCOP 55895 Ribonuclease Rh-like
25 23 11 0 SCOP 54160 Chromo domain-like
25 25 8 1 SCOP 55031 Bacterial exopeptidase dimerisation domain
25 25 7 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
25 25 8 0 SCOP 57196 EGF/Laminin
24 24 6 2 SCOP 54197 HIT-like
24 14 6 0 SCOP 81333 F1F0 ATP synthase subunit C
24 24 9 0 SCOP 53649 Alkaline phosphatase-like
24 24 4 1 SCOP 55797 PR-1-like
24 21 10 1 SCOP 82704 AlbA-like
24 23 6 1 SCOP 55103 FAD-linked oxidases, C-terminal domain
24 24 13 0 SCOP 46774 ARID-like
24 16 8 0 SCOP 109905 Surp module (SWAP domain)
24 21 8 0 SCOP 140383 BSD domain-like
24 23 14 0 SCOP 82919 Zn-finger domain of Sec23/24
23 23 6 0 SCOP 54736 ClpS-like
23 23 9 1 SCOP 52425 Cryptochrome/photolyase, N-terminal domain
23 23 8 0 SCOP 47769 SAM/Pointed domain
23 13 7 1 SCOP 54416 Amine oxidase N-terminal region
23 16 8 0 SCOP 46942 Elongation factor TFIIS domain 2
22 21 7 1 SCOP 56808 Ribosomal protein L1
22 21 15 0 SCOP 103657 BAR/IMD domain-like
22 22 4 1 SCOP 51316 Mss4-like
22 21 5 1 SCOP 55144 LigT-like
22 22 8 0 SCOP 50800 PK beta-barrel domain-like
22 22 7 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
22 21 8 1 SCOP 49998 Amine oxidase catalytic domain
22 20 17 1 SCOP 56204 Hect, E3 ligase catalytic domain
22 22 13 1 SCOP 49447 Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
22 22 11 1 SCOP 81811 Helical domain of Sec23/24
21 21 7 1 SCOP 52080 Ribosomal proteins L15p and L18e
21 21 8 1 SCOP 82649 SufE/NifU
21 20 5 1 SCOP 56815 Sec1/munc18-like (SM) proteins
21 20 6 1 SCOP 54648 DLC
21 21 4 0 SCOP 46579 Prefoldin
21 21 12 0 SCOP 55257 RBP11-like subunits of RNA polymerase
21 12 7 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
21 14 7 0 SCOP 55136 Probable bacterial effector-binding domain
21 20 5 0 SCOP 49354 PapD-like
21 21 11 1 SCOP 82754 C-terminal, gelsolin-like domain of Sec23/24
20 19 6 1 SCOP 75304 Amidase signature (AS) enzymes
20 17 6 2 SCOP 50814 Lipocalins
20 20 6 0 SCOP 47090 PGBD-like
20 20 4 1 SCOP 48056 Di-copper centre-containing domain
20 19 9 1 SCOP 54826 Enolase N-terminal domain-like
20 20 10 1 SCOP 75632 Cullin homology domain
20 20 10 0 SCOP 63491 BAG domain
20 20 7 1 SCOP 54585 Cdc48 domain 2-like
19 19 6 2 SCOP 53697 SIS domain
19 19 5 0 SCOP 54843 Ribosomal protein L22
19 19 6 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
19 18 6 2 SCOP 51419 PLP-binding barrel
19 13 6 1 SCOP 53590 Nucleoside hydrolase
19 17 6 1 SCOP 55770 Profilin (actin-binding protein)
19 18 7 1 SCOP 101112 Oxygen-evolving enhancer protein 3,
19 18 11 1 SCOP 51604 Enolase C-terminal domain-like
19 19 9 1 SCOP 48019 post-AAA+ oligomerization domain-like
19 19 8 2 SCOP 52922 TK C-terminal domain-like
19 19 7 2 SCOP 55060 GHMP Kinase, C-terminal domain
19 16 8 0 SCOP 110004 Glycolipid transfer protein, GLTP
18 17 11 1 SCOP 54862 4Fe-4S ferredoxins
18 18 5 1 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
18 17 7 1 SCOP 49329 Cu,Zn superoxide dismutase-like
18 18 5 1 SCOP 53056 beta-carbonic anhydrase, cab
18 18 2 1 SCOP 111352 Ammonium transporter
18 14 7 1 SCOP 55979 DNA clamp
18 18 10 2 SCOP 51246 Rudiment single hybrid motif
18 18 11 1 SCOP 48334 DNA repair protein MutS, domain III
18 18 8 1 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
18 18 8 0 SCOP 47676 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
18 18 8 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
17 17 5 1 SCOP 50324 Inorganic pyrophosphatase
17 14 7 1 SCOP 55205 EPT/RTPC-like
17 17 6 0 SCOP 51306 LexA/Signal peptidase
17 17 4 0 SCOP 64268 PX domain
17 13 9 2 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
17 17 8 1 SCOP 53795 PEP carboxykinase-like
17 15 6 1 SCOP 54909 Dimeric alpha+beta barrel
17 14 9 0 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
17 14 8 1 SCOP 53732 Aconitase iron-sulfur domain
17 17 9 0 SCOP 160443 SMR domain-like
17 16 7 1 SCOP 48225 Seven-hairpin glycosidases
17 9 7 0 SCOP 47762 PAH2 domain
16 14 5 1 SCOP 52161 Ribosomal protein L13
16 15 2 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
16 16 3 1 SCOP 49777 PEBP-like
16 16 9 1 SCOP 88713 Glycoside hydrolase/deacetylase
16 16 7 1 SCOP 54984 eEF-1beta-like
16 13 12 0 SCOP 68906 SAP domain
15 14 7 0 SCOP 46946 S13-like H2TH domain
15 14 3 1 SCOP 51351 Triosephosphate isomerase (TIM)
15 15 6 0 SCOP 144122 Tim10-like
15 15 9 1 SCOP 52210 Succinyl-CoA synthetase domains
15 15 5 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
15 15 7 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
15 15 5 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
15 13 10 0 SCOP 57933 TAZ domain
15 15 8 0 SCOP 55277 GYF domain
15 15 4 1 SCOP 55035 NAD-binding domain of HMG-CoA reductase
14 13 4 1 SCOP 55068 Peptide methionine sulfoxide reductase
14 14 5 1 SCOP 51730 FAD-linked oxidoreductase
14 14 5 1 SCOP 52313 Ribosomal protein S2
14 14 6 1 SCOP 50475 FMN-binding split barrel
14 12 5 2 SCOP 51726 UROD/MetE-like
14 13 5 1 SCOP 144000 Oxysterol-binding protein-like
14 14 3 2 SCOP 90096 Subunits of heterodimeric actin filament capping protein Capz
14 13 7 1 SCOP 56317 Carbon-nitrogen hydrolase
14 14 4 1 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
14 14 6 1 SCOP 75005 Arabinanase/levansucrase/invertase
14 13 4 1 SCOP 56726 DNA topoisomerase IV, alpha subunit
14 14 7 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
14 14 6 0 SCOP 101898 NHL repeat
14 14 5 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
14 14 5 0 SCOP 52129 Caspase-like
14 14 7 0 SCOP 52075 Outer arm dynein light chain 1
14 13 11 1 SCOP 81837 BEACH domain
14 14 5 0 SCOP 101576 Supernatant protein factor (SPF), C-terminal domain
14 14 7 0 SCOP 159042 Plus3-like
14 14 3 1 SCOP 116768 DNA-binding domain of EIN3-like
13 12 4 1 SCOP 47973 Ribosomal protein S7
13 13 4 1 SCOP 52166 Ribosomal protein L4
13 12 6 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
13 13 7 0 SCOP 161219 CHY zinc finger-like
13 13 3 1 SCOP 55159 eIF1-like
13 13 7 1 SCOP 56524 Oxidoreductase molybdopterin-binding domain
13 13 9 0 SCOP 55154 CYTH-like phosphatases
13 13 7 1 SCOP 48173 Cryptochrome/photolyase FAD-binding domain
13 13 9 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
13 13 8 0 SCOP 69322 Tricorn protease domain 2
13 13 6 1 SCOP 89124 Nop domain
13 10 7 1 SCOP 50370 Ricin B-like lectins
13 9 6 1 SCOP 56042 PurM C-terminal domain-like
13 7 5 1 SCOP 55945 TATA-box binding protein-like
13 13 8 1 SCOP 81271 TGS-like
13 12 11 0 SCOP 158639 ENT-like
13 13 8 1 SCOP 48425 Sec7 domain
13 12 8 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
13 13 6 0 SCOP 161245 Zinc hairpin stack
12 12 3 1 SCOP 103491 Preprotein translocase SecY subunit
12 12 5 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
12 12 9 1 SCOP 50715 Ribosomal protein L25-like
12 12 3 1 SCOP 56276 S-adenosylmethionine decarboxylase
12 12 6 0 SCOP 82657 BolA-like
12 12 4 0 SCOP 54995 Ribosomal protein S6
12 11 3 0 SCOP 48140 Ribosomal protein L19 (L19e)
12 11 3 1 SCOP 55418 eIF4e-like
12 11 6 1 SCOP 53800 Chelatase
12 12 4 0 SCOP 52091 SpoIIaa-like
12 12 3 0 SCOP 102712 JAB1/MPN domain
12 12 11 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
12 11 10 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
12 12 6 0 SCOP 57802 Rubredoxin-like
12 12 6 1 SCOP 46548 alpha-helical ferredoxin
12 4 2 0 SCOP 50199 Staphylococcal nuclease
12 12 4 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
12 12 6 0 SCOP 63570 PABC (PABP) domain
12 11 4 0 SCOP 47040 Kix domain of CBP (creb binding protein)
12 12 6 1 SCOP 81822 RuBisCo LSMT C-terminal, substrate-binding domain
12 12 7 1 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
11 11 4 1 SCOP 54999 Ribosomal protein S10
11 11 3 1 SCOP 50193 Ribosomal protein L14
11 10 6 1 SCOP 55282 RL5-like
11 11 5 0 SCOP 46561 Ribosomal protein L29 (L29p)
11 11 4 1 SCOP 143113 NAP-like
11 9 4 2 SCOP 55909 Pentein
11 8 4 0 SCOP 55331 Tautomerase/MIF
11 9 8 0 SCOP 47781 RuvA domain 2-like
11 11 2 1 SCOP 89562 RraA-like
11 11 10 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
11 10 4 0 SCOP 54654 CI-2 family of serine protease inhibitors
11 11 5 0 SCOP 50405 Actin-crosslinking proteins
11 7 2 1 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
11 11 8 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
11 11 11 1 SCOP 53623 MurD-like peptide ligases, catalytic domain
11 8 5 1 SCOP 55326 PurM N-terminal domain-like
11 8 7 1 SCOP 56053 Ribosomal protein L6
11 11 7 1 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
11 11 5 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
11 11 9 0 SCOP 48350 GTPase activation domain, GAP
11 11 4 0 SCOP 47895 Transducin (alpha subunit), insertion domain
11 4 4 0 SCOP 49303 beta-Galactosidase/glucuronidase domain
11 11 4 0 SCOP 110942 HSP90 C-terminal domain
11 11 4 0 SCOP 54556 Chitinase insertion domain
11 11 4 0 SCOP 81502 ISP transmembrane anchor
10 10 5 1 SCOP 53790 Tetrapyrrole methylase
10 10 3 0 SCOP 141091 L21p-like
10 10 4 1 SCOP 53748 Phosphoglycerate kinase
10 10 6 0 SCOP 46992 Ribosomal protein S20
10 9 3 1 SCOP 55298 YjgF-like
10 10 3 0 SCOP 55129 Ribosomal protein L30p/L7e
10 10 6 1 SCOP 48613 Heme oxygenase-like
10 10 3 1 SCOP 57798 Casein kinase II beta subunit
10 10 6 0 SCOP 54897 Protease propeptides/inhibitors
10 10 4 0 SCOP 53639 AraD/HMP-PK domain-like
10 10 5 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
10 10 2 1 SCOP 81558 Photosystem I subunits PsaA/PsaB
10 10 2 1 SCOP 55239 RuBisCO, small subunit
10 10 3 1 SCOP 51069 Carbonic anhydrase
10 10 7 1 SCOP 52016 LeuD/IlvD-like
10 10 3 0 SCOP 47413 lambda repressor-like DNA-binding domains
10 9 4 1 SCOP 53213 LigB-like
10 10 4 1 SCOP 102462 Peptidyl-tRNA hydrolase II
10 10 8 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
10 5 2 0 SCOP 53681 Aspartate/glutamate racemase
10 10 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
10 10 2 1 SCOP 141493 Allene oxide cyclase-like
10 10 3 0 SCOP 144074 E2F-DP heterodimerization region
10 10 6 0 SCOP 54529 Mitochondrial glycoprotein MAM33-like
10 8 7 1 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
10 9 8 0 SCOP 75553 Smc hinge domain
10 10 4 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
9 9 7 1 SCOP 56047 Ribosomal protein S8
9 5 5 0 SCOP 56214 4'-phosphopantetheinyl transferase
9 9 4 0 SCOP 110324 Ribosomal L27 protein-like
9 9 3 1 SCOP 75620 Release factor
9 9 5 0 SCOP 160369 Ribosomal protein L10-like
9 9 7 0 SCOP 47060 S15/NS1 RNA-binding domain
9 8 5 1 SCOP 64005 Undecaprenyl diphosphate synthase
9 9 8 1 SCOP 52949 Macro domain-like
9 9 5 1 SCOP 48256 Citrate synthase
9 9 4 0 SCOP 54575 Ribosomal protein L31e
9 8 5 1 SCOP 56634 Heme-dependent catalase-like
9 9 6 0 SCOP 47027 Acyl-CoA binding protein
9 9 5 0 SCOP 82282 Homocysteine S-methyltransferase
9 8 4 1 SCOP 101546 ASF1-like
9 8 5 1 SCOP 50993 Peptidase/esterase 'gauge' domain
9 9 6 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
9 7 3 0 SCOP 142535 AF0625-like
9 9 5 0 SCOP 55287 RPB5-like RNA polymerase subunit
9 9 5 0 SCOP 53092 Creatinase/prolidase N-terminal domain
9 9 6 0 SCOP 46589 tRNA-binding arm
9 8 4 1 SCOP 68923 PEP carboxykinase N-terminal domain
9 9 4 1 SCOP 56371 Ribosome inactivating proteins (RIP)
9 9 3 0 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
9 9 4 0 SCOP 82708 R3H domain
9 9 3 0 SCOP 47938 Functional domain of the splicing factor Prp18
9 9 4 0 SCOP 47672 Transferrin receptor-like dimerisation domain
9 9 7 1 SCOP 89942 eEF1-gamma domain
9 9 6 0 SCOP 53036 Eukaryotic RPB5 N-terminal domain
9 9 2 1 SCOP 63887 P-domain of calnexin/calreticulin
9 9 5 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
9 9 4 0 SCOP 160219 AMPKBI-like
9 9 3 0 SCOP 101821 Aminopeptidase/glucanase lid domain
8 8 5 0 SCOP 53167 Purine and uridine phosphorylases
8 8 4 0 SCOP 54570 Ribosomal protein S19
8 8 2 0 SCOP 57840 Ribosomal protein L36
8 8 6 1 SCOP 52980 Restriction endonuclease-like
8 7 4 1 SCOP 142695 RibA-like
8 8 7 0 SCOP 101908 Putative isomerase YbhE
8 8 4 2 SCOP 46626 Cytochrome c
8 7 4 0 SCOP 63393 RNA polymerase subunits
8 8 4 1 SCOP 47819 HRDC-like
8 5 5 2 SCOP 52972 ITPase-like
8 6 6 1 SCOP 69645 Arp2/3 complex subunits
8 8 3 0 SCOP 47072 Cysteine alpha-hairpin motif
8 8 5 2 SCOP 55931 Glutamine synthetase/guanido kinase
8 8 2 0 SCOP 50090 Electron transport accessory proteins
8 4 4 1 SCOP 56266 DmpA/ArgJ-like
8 8 5 1 SCOP 54447 ssDNA-binding transcriptional regulator domain
8 7 5 1 SCOP 48600 Chorismate mutase II
8 8 2 0 SCOP 116820 Rps17e-like
8 8 8 1 SCOP 142921 WGR domain-like
8 8 2 0 SCOP 90257 Myosin rod fragments
8 8 4 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
8 7 5 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
8 8 5 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
8 4 1 1 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
8 8 4 1 SCOP 55957 Phosphoglucomutase, C-terminal domain
8 8 8 1 SCOP 49348 Clathrin adaptor appendage domain
8 8 2 1 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
8 8 5 0 SCOP 88688 Families 57/38 glycoside transferase middle domain
8 8 6 0 SCOP 102848 NSFL1 (p97 ATPase) cofactor p47, SEP domain
8 8 5 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
8 8 5 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
8 8 8 1 SCOP 47587 Domain of poly(ADP-ribose) polymerase
8 8 5 0 SCOP 101238 XPC-binding domain
7 7 3 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
7 7 3 1 SCOP 56420 Peptide deformylase
7 7 3 1 SCOP 64263 Prokaryotic ribosomal protein L17
7 7 6 1 SCOP 53597 Dihydrofolate reductase-like
7 7 3 0 SCOP 143800 L28p-like
7 7 4 2 SCOP 55821 YrdC/RibB
7 7 4 1 SCOP 51713 tRNA-guanine transglycosylase
7 7 4 0 SCOP 52042 Ribosomal protein L32e
7 7 3 0 SCOP 54762 Signal recognition particle alu RNA binding heterodimer, SRP9/14
7 7 3 1 SCOP 53328 Formyltransferase
7 7 3 0 SCOP 81524 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
7 7 2 0 SCOP 81411 Mitochondrial cytochrome c oxidase subunit VIa
7 7 5 1 SCOP 56019 The spindle assembly checkpoint protein mad2
7 7 6 1 SCOP 56529 FAH
7 7 5 1 SCOP 56349 DNA breaking-rejoining enzymes
7 7 3 1 SCOP 54913 GlnB-like
7 7 3 1 SCOP 51391 Thiamin phosphate synthase
7 7 6 1 SCOP 52335 Methylglyoxal synthase-like
7 7 1 0 SCOP 64076 MTH938-like
7 6 5 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
7 7 1 0 SCOP 48619 Phospholipase A2, PLA2
7 7 4 0 SCOP 48537 Phospholipase C/P1 nuclease
7 7 2 0 SCOP 158745 LanC-like
7 7 4 0 SCOP 49265 Fibronectin type III
7 7 6 0 SCOP 81891 Poly A polymerase C-terminal region-like
7 7 3 1 SCOP 101904 GyrA/ParC C-terminal domain-like
7 7 2 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
7 7 2 1 SCOP 118359 Expressed protein At2g23090/F21P24.15
7 7 3 1 SCOP 109993 VPS9 domain
7 7 2 0 SCOP 57016 Plant lectins/antimicrobial peptides
7 7 2 0 SCOP 57277 Granulin repeat
7 7 4 0 SCOP 140111 Endosomal sorting complex assembly domain
7 7 4 0 SCOP 109715 DEK C-terminal domain
7 7 5 0 SCOP 50916 Rap30/74 interaction domains
7 7 5 0 SCOP 143503 PUG domain-like
7 7 7 0 SCOP 55711 Subdomain of clathrin and coatomer appendage domain
7 7 4 0 SCOP 140612 EB1 dimerisation domain-like
7 7 6 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
6 6 3 0 SCOP 89360 HesB-like domain
6 6 2 1 SCOP 56770 HydA/Nqo6-like
6 6 2 0 SCOP 110296 Oligoxyloglucan reducing end-specific cellobiohydrolase
6 6 2 0 SCOP 103456 Preprotein translocase SecE subunit
6 6 4 0 SCOP 140718 Mediator hinge subcomplex-like
6 6 1 0 SCOP 48662 Ribosomal protein L39e
6 6 3 0 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
6 5 3 0 SCOP 143447 AMMECR1-like
6 6 2 1 SCOP 101960 Stabilizer of iron transporter SufD
6 6 4 0 SCOP 141734 HisI-like
6 6 1 0 SCOP 161021 Photosystem II reaction center protein J, PsbJ
6 6 3 0 SCOP 161084 MAPEG domain-like
6 6 4 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
6 6 6 0 SCOP 103256 Hypothetical protein TM0160
6 5 4 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
6 6 5 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
6 6 6 0 SCOP 50952 Soluble quinoprotein glucose dehydrogenase
6 5 5 1 SCOP 56003 Molybdenum cofactor-binding domain
6 6 3 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
6 6 5 0 SCOP 142984 Nqo1 middle domain-like
6 6 3 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
6 6 4 0 SCOP 140860 Pseudo ankyrin repeat-like
6 6 5 0 SCOP 158573 GINS helical bundle-like
6 6 2 1 SCOP 140102 ISY1 domain-like
6 6 3 0 SCOP 81531 Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
6 6 5 1 SCOP 142019 Nqo1 FMN-binding domain-like
6 6 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
6 6 5 1 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
6 6 3 0 SCOP 103243 KA1-like
6 6 1 0 SCOP 101931 Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
6 6 5 0 SCOP 140996 Hermes dimerisation domain
6 6 5 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
6 6 2 0 SCOP 158230 PRP4-like
5 5 3 0 SCOP 48013 NusB-like
5 5 1 1 SCOP 74731 Ribosomal protein L20
5 5 3 1 SCOP 82549 DAK1/DegV-like
5 5 3 1 SCOP 55194 Ribosome recycling factor, RRF
5 5 3 1 SCOP 69765 IpsF-like
5 5 2 0 SCOP 81514 Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
5 5 1 0 SCOP 69103 Arp2/3 complex 16 kDa subunit ARPC5
5 5 4 0 SCOP 47694 Cytochrome c oxidase subunit h
5 5 3 0 SCOP 58113 Apolipoprotein A-I
5 5 4 0 SCOP 69618 HemD-like
5 4 2 1 SCOP 46458 Globin-like
5 5 3 1 SCOP 81568 Photosystem I reaction center subunit XI, PsaL
5 5 3 0 SCOP 56601 beta-lactamase/transpeptidase-like
5 3 2 0 SCOP 46955 Putative DNA-binding domain
5 5 2 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
5 4 4 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
5 5 5 0 SCOP 56219 DNase I-like
5 5 2 0 SCOP 55826 YbaK/ProRS associated domain
5 5 4 0 SCOP 75011 3-carboxy-cis,cis-mucoante lactonizing enzyme
5 5 2 0 SCOP 46950 Double-stranded DNA-binding domain
5 3 3 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
5 4 3 0 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
5 5 2 0 SCOP 69318 Integrin alpha N-terminal domain
5 5 5 0 SCOP 63825 YWTD domain
5 5 3 1 SCOP 52009 Phosphohistidine domain
5 5 4 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
5 5 5 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
5 5 3 0 SCOP 50621 Alanine racemase C-terminal domain-like
5 5 2 1 SCOP 110111 Ctag/Cox11
5 5 4 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
5 5 2 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
5 5 5 0 SCOP 63418 MurE/MurF N-terminal domain
5 5 2 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
5 5 3 0 SCOP 55545 beta-N-acetylhexosaminidase-like domain
5 5 1 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
5 4 4 1 SCOP 89817 Mago nashi protein
5 3 3 0 SCOP 55394 Bactericidal permeability-increasing protein, BPI
5 5 4 1 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
5 5 4 0 SCOP 48340 Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
5 5 3 0 SCOP 57414 Hairpin loop containing domain-like
5 5 2 0 SCOP 50911 Mannose 6-phosphate receptor domain
5 4 3 0 SCOP 143791 DUSP-like
5 5 2 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
5 5 3 1 SCOP 56741 Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
5 5 5 0 SCOP 63862 Thiamin pyrophosphokinase, substrate-binding domain
5 5 3 0 SCOP 64586 C-terminal domain of ProRS
5 5 3 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
5 5 4 0 SCOP 53150 DNA repair protein MutS, domain II
4 4 2 0 SCOP 46911 Ribosomal protein S18
4 4 2 0 SCOP 64182 DHH phosphoesterases
4 4 3 0 SCOP 54565 Ribosomal protein S16
4 3 3 1 SCOP 103263 Chorismate synthase, AroC
4 4 4 0 SCOP 54285 MoaD/ThiS
4 4 2 0 SCOP 141678 MAL13P1.257-like
4 4 3 1 SCOP 102886 Coproporphyrinogen III oxidase
4 4 4 0 SCOP 55248 PCD-like
4 4 4 1 SCOP 48439 Protein prenylyltransferase
4 4 1 1 SCOP 118203 Vacuolar ATP synthase subunit C
4 3 3 1 SCOP 63562 RPB6/omega subunit-like
4 4 1 0 SCOP 161055 PsbZ-like
4 3 3 0 SCOP 49478 Cna protein B-type domain
4 4 4 0 SCOP 55718 SCP-like
4 4 4 0 SCOP 82771 GIY-YIG endonuclease
4 4 2 1 SCOP 160909 ATP12-like
4 4 3 1 SCOP 103025 Folate-binding domain
4 4 4 1 SCOP 110069 ApaG-like
4 4 2 0 SCOP 50486 FMT C-terminal domain-like
4 4 4 0 SCOP 50346 PRC-barrel domain
4 4 2 0 SCOP 143437 THUMP domain-like
4 4 3 0 SCOP 160374 RplX-like
4 4 2 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
4 4 2 1 SCOP 102645 CoaB-like
4 4 3 0 SCOP 102110 (2r)-phospho-3-sulfolactate synthase ComA
4 4 4 0 SCOP 118116 DNA mismatch repair protein MutL
4 4 4 1 SCOP 51971 Nucleotide-binding domain
4 4 4 0 SCOP 160059 PriA/YqbF domain
4 4 3 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
4 4 3 1 SCOP 110019 ERO1-like
4 4 2 0 SCOP 143548 Serine metabolism enzymes domain
4 4 3 0 SCOP 90002 Hypothetical protein YjiA, C-terminal domain
4 4 3 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
4 4 2 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
4 4 3 0 SCOP 56973 Aerolisin/ETX pore-forming domain
4 4 4 0 SCOP 55550 SH2 domain
4 4 3 1 SCOP 47446 Signal peptide-binding domain
4 4 4 0 SCOP 55271 DNA repair protein MutS, domain I
4 4 1 0 SCOP 57184 Growth factor receptor domain
4 4 2 0 SCOP 110221 AbfB domain
4 4 2 1 SCOP 101152 Mob1/phocein
4 4 3 0 SCOP 47396 Transcription factor IIA (TFIIA), alpha-helical domain
4 4 4 1 SCOP 140984 PTPA-like
4 4 1 0 SCOP 161065 ATP synthase D chain-like
4 4 2 0 SCOP 140106 Calcyclin-binding protein-like
4 4 2 0 SCOP 103107 Hypothetical protein c14orf129, hspc210
4 4 4 0 SCOP 47050 VHP, Villin headpiece domain
4 4 2 1 SCOP 101233 PWI domain
4 4 1 0 SCOP 50386 STI-like
4 4 2 0 SCOP 160527 V-type ATPase subunit E-like
4 4 4 0 SCOP 116878 TrmE connector domain
4 4 3 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
3 3 2 0 SCOP 82607 YbaB-like
3 3 2 0 SCOP 89919 Ribosome-binding factor A, RbfA
3 3 3 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
3 3 2 0 SCOP 54060 His-Me finger endonucleases
3 3 1 1 SCOP 55387 Frataxin/Nqo15-like
3 3 3 0 SCOP 144217 CSL zinc finger
3 3 2 0 SCOP 52499 Isochorismatase-like hydrolases
3 3 1 0 SCOP 51645 Malate synthase G
3 3 1 0 SCOP 81508 Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
3 3 3 0 SCOP 50044 SH3-domain
3 3 3 1 SCOP 69060 Arp2/3 complex 21 kDa subunit ARPC3
3 3 2 0 SCOP 103111 Activator of Hsp90 ATPase, Aha1
3 3 2 0 SCOP 46988 Tubulin chaperone cofactor A
3 3 2 0 SCOP 48690 Epsilon subunit of mitochondrial F1F0-ATP synthase
3 3 2 0 SCOP 81648 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
3 3 1 1 SCOP 81536 Subunit III of photosystem I reaction centre, PsaF
3 3 1 1 SCOP 161077 Photosystem II antenna protein-like
3 3 2 1 SCOP 51717 Dihydropteroate synthetase-like
3 3 1 0 SCOP 142754 NadA-like
3 3 1 0 SCOP 82697 PurS-like
3 3 2 0 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
3 3 1 0 SCOP 103441 PetM subunit of the cytochrome b6f complex
3 3 2 1 SCOP 64167 SurE-like
3 3 3 1 SCOP 143990 YbiA-like
3 3 2 0 SCOP 158997 Trm112p-like
3 3 3 0 SCOP 143456 VC0467-like
3 3 3 0 SCOP 89095 GatB/YqeY motif
3 3 1 0 SCOP 56747 Prim-pol domain
3 3 2 1 SCOP 101473 DhaL-like
3 3 2 0 SCOP 141130 Acetamidase/Formamidase-like
3 3 2 0 SCOP 69786 YggU-like
3 3 2 0 SCOP 158710 PSPTO4464-like
3 2 2 0 SCOP 102198 Putative cyclase
3 3 1 0 SCOP 160350 Rnp2-like
3 3 2 0 SCOP 69695 SRP19
3 3 3 0 SCOP 158832 Tex N-terminal region-like
3 3 2 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
3 3 3 0 SCOP 50960 TolB, C-terminal domain
3 3 2 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
3 3 2 0 SCOP 49384 Carbohydrate-binding domain
3 3 3 0 SCOP 49464 Carboxypeptidase regulatory domain-like
3 3 3 0 SCOP 55658 L9 N-domain-like
3 3 2 0 SCOP 56436 C-type lectin-like
3 3 1 0 SCOP 75704 Mitotic arrest deficient-like 1, Mad1
3 3 2 0 SCOP 141673 MOSC N-terminal domain-like
3 3 3 1 SCOP 54665 CO dehydrogenase molybdoprotein N-domain-like
3 3 3 1 SCOP 55447 CO dehydrogenase flavoprotein C-terminal domain-like
3 3 2 1 SCOP 51101 Mannose-binding lectins
3 3 2 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
3 3 3 0 SCOP 51984 MurCD N-terminal domain
3 3 3 1 SCOP 63882 MoeA N-terminal region -like
3 3 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
3 3 3 1 SCOP 47741 CO dehydrogenase ISP C-domain like
3 3 2 0 SCOP 158702 Sec63 N-terminal domain-like
3 3 2 0 SCOP 47933 ERP29 C domain-like
3 3 3 0 SCOP 54752 RecA protein, C-terminal domain
3 3 3 0 SCOP 140490 Nqo1C-terminal domain-like
3 3 2 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
3 3 2 0 SCOP 116742 eIF2alpha middle domain-like
3 3 2 1 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
3 3 3 1 SCOP 69000 FAD-dependent thiol oxidase
3 3 3 0 SCOP 116846 MIT domain
3 3 3 0 SCOP 48097 Regulator of G-protein signaling, RGS
3 3 3 0 SCOP 54368 Glutamine synthetase, N-terminal domain
3 3 1 1 SCOP 51649 RuBisCo, C-terminal domain
3 3 2 0 SCOP 50784 Transcription factor IIA (TFIIA), beta-barrel domain
3 3 3 1 SCOP 81886 Helical scaffold and wing domains of SecA
3 3 2 1 SCOP 47212 FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
3 3 1 0 SCOP 140427 VPS28 C-terminal domain-like
3 3 2 1 SCOP 69340 C-terminal domain of adenylylcyclase associated protein
3 3 1 0 SCOP 49758 Calpain large subunit, middle domain (domain III)
3 3 2 0 SCOP 101790 Aminomethyltransferase beta-barrel domain
3 3 3 1 SCOP 81767 Pre-protein crosslinking domain of SecA
3 3 3 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
3 3 1 0 SCOP 109736 FGAM synthase PurL, linker domain
2 2 2 1 SCOP 52141 Uracil-DNA glycosylase-like
2 2 1 0 SCOP 143034 L35p-like
2 2 2 1 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
2 2 2 1 SCOP 51658 Xylose isomerase-like
2 2 1 0 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
2 2 1 1 SCOP 51283 dUTPase-like
2 2 2 0 SCOP 117991 YbeD/HP0495-like
2 2 1 0 SCOP 81321 Family A G protein-coupled receptor-like
2 2 1 0 SCOP 140959 Indolic compounds 2,3-dioxygenase-like
2 2 2 0 SCOP 103486 V-type ATP synthase subunit C
2 2 2 0 SCOP 143870 PF0523-like
2 2 2 1 SCOP 64153 YjeF N-terminal domain-like
2 2 2 1 SCOP 57662 Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
2 2 1 1 SCOP 64234 Photosystem I subunit PsaD
2 2 1 1 SCOP 81483 Bacterial photosystem II reaction centre, L and M subunits
2 2 2 0 SCOP 111038 YjbQ-like
2 2 1 1 SCOP 51998 PFL-like glycyl radical enzymes
2 1 1 0 SCOP 118196 YaeB-like
2 2 2 0 SCOP 58100 Bacterial hemolysins
2 2 1 0 SCOP 158615 RbcX-like
2 2 1 0 SCOP 101744 Rof/RNase P subunit-like
2 2 2 0 SCOP 89550 PHP domain-like
2 2 2 0 SCOP 110399 ThiG-like
2 1 1 0 SCOP 88874 Receptor-binding domain of short tail fibre protein gp12
2 2 2 0 SCOP 54111 Urease, gamma-subunit
2 2 1 0 SCOP 54975 Acylphosphatase/BLUF domain-like
2 2 2 0 SCOP 51004 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
2 2 1 0 SCOP 109910 YgfY-like
2 2 1 0 SCOP 49472 Transthyretin (synonym: prealbumin)
2 2 1 1 SCOP 158694 UraD-Like
2 1 1 0 SCOP 102588 LmbE-like
2 2 1 0 SCOP 110581 Indigoidine synthase A-like
2 2 2 0 SCOP 56821 Prismane protein-like
2 2 1 1 SCOP 56925 OMPA-like
2 1 1 0 SCOP 142764 YgbK-like
2 2 2 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
2 2 2 0 SCOP 160631 SMI1/KNR4-like
2 2 2 1 SCOP 74784 Translin
2 2 2 0 SCOP 63867 MoeA C-terminal domain-like
2 2 2 0 SCOP 143865 CorA soluble domain-like
2 2 1 0 SCOP 82093 Heme chaperone CcmE
2 1 1 0 SCOP 89372 Fucose-specific lectin
2 2 1 1 SCOP 82114 Riboflavin kinase-like
2 2 2 0 SCOP 141255 YccV-like
2 2 1 0 SCOP 55234 Cyanase C-terminal domain
2 2 2 1 SCOP 55464 Origin of replication-binding domain, RBD-like
2 2 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
2 2 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
2 2 2 0 SCOP 161270 PspA lactotransferrin-binding region
2 2 1 0 SCOP 47144 HSC20 (HSCB), C-terminal oligomerisation domain
2 2 2 0 SCOP 117289 Nucleoporin domain
2 2 1 1 SCOP 55637 Cell cycle regulatory proteins
2 2 1 0 SCOP 101278 N-terminal domain of adenylylcyclase associated protein, CAP
2 2 2 0 SCOP 47794 Rad51 N-terminal domain-like
2 2 2 0 SCOP 55116 Formiminotransferase domain of formiminotransferase-cyclodeaminase.
2 2 2 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
2 2 2 0 SCOP 74924 Cap-Gly domain
2 2 2 0 SCOP 54991 Anticodon-binding domain of PheRS
2 2 1 0 SCOP 54452 MHC antigen-recognition domain
2 2 1 1 SCOP 82109 MIR domain
2 2 2 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
2 2 2 1 SCOP 69012 alpha-ketoacid dehydrogenase kinase, N-terminal domain
2 2 2 1 SCOP 143875 ERH-like
2 2 1 0 SCOP 57774 Microbial and mitochondrial ADK, insert "zinc finger" domain
2 2 1 1 SCOP 110993 eIF-2-alpha, C-terminal domain
2 2 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
2 2 1 1 SCOP 82215 C-terminal autoproteolytic domain of nucleoporin nup98
2 2 2 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
2 2 2 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
2 2 2 0 SCOP 47031 Second domain of FERM
2 2 2 1 SCOP 88802 Pre-PUA domain
2 2 2 1 SCOP 160897 Taf5 N-terminal domain-like
2 2 2 0 SCOP 55653 Ribosomal protein L9 C-domain
2 2 2 1 SCOP 49441 Cytochrome f, large domain
2 2 2 0 SCOP 144256 TSP9-like
2 2 1 0 SCOP 81496 Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
2 2 2 1 SCOP 63433 Fumarylacetoacetate hydrolase, FAH, N-terminal domain
1 1 1 0 SCOP 56731 DNA primase core
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 1 SCOP 56796 Dehydroquinate synthase-like
1 1 1 0 SCOP 55469 FMN-dependent nitroreductase-like
1 1 1 1 SCOP 69500 DTD-like
1 1 1 0 SCOP 103464 Oligosaccharyltransferase subunit ost4p
1 1 1 0 SCOP 142897 TFB5-like
1 1 1 0 SCOP 111278 SSo0622-like
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 0 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
1 1 1 1 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 1 SCOP 52788 Phosphotyrosine protein phosphatases I
1 1 1 1 SCOP 81442 Cytochrome c oxidase subunit I-like
1 1 1 0 SCOP 81563 Photosystem I reaction center subunit X, PsaK
1 1 1 0 SCOP 161025 Photosystem II 10 kDa phosphoprotein PsbH
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 143243 Nqo5-like
1 1 1 0 SCOP 161033 Photosystem II reaction center protein M, PsbM
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 1 SCOP 56762 HydB/Nqo4-like
1 1 1 0 SCOP 159501 EreA/ChaN-like
1 1 1 0 SCOP 140663 TTHA0068-like
1 1 1 0 SCOP 51278 Urease, beta-subunit
1 1 1 1 SCOP 143081 BB1717-like
1 1 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
1 1 1 0 SCOP 110916 Peptidyl-tRNA hydrolase domain-like
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 0 SCOP 142338 CofD-like
1 1 1 1 SCOP 51219 TRAP-like
1 1 1 0 SCOP 159659 Cgl1923-like
1 1 1 0 SCOP 50939 Sialidases
1 1 1 0 SCOP 48695 Multiheme cytochromes
1 1 1 0 SCOP 50974 Nitrous oxide reductase, N-terminal domain
1 1 1 0 SCOP 160104 Acetoacetate decarboxylase-like
1 1 1 0 SCOP 69349 Phage fibre proteins
1 1 1 0 SCOP 55608 Homing endonucleases
1 1 1 0 SCOP 69304 Tricorn protease N-terminal domain
1 1 1 1 SCOP 142877 EndoU-like
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 144206 NOB1 zinc finger-like
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 49373 Invasin/intimin cell-adhesion fragments
1 1 1 0 SCOP 81853 Family 10 polysaccharide lyase
1 1 1 0 SCOP 81464 Cytochrome c oxidase subunit II-like, transmembrane region
1 1 1 0 SCOP 81585 PsbU/PolX domain-like
1 1 1 0 SCOP 51120 beta-Roll
1 1 1 1 SCOP 140869 GUN4-like
1 1 1 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
1 1 1 0 SCOP 110836 Hypothetical protein SAV1430
1 1 1 0 SCOP 48431 Lipovitellin-phosvitin complex, superhelical domain
1 1 1 0 SCOP 81624 N-terminal domain of MutM-like DNA repair proteins
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 55904 Ornithine decarboxylase C-terminal domain
1 1 1 0 SCOP 57845 B-box zinc-binding domain
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 1 SCOP 109920 Hypothetical protein At3g22680
1 1 1 0 SCOP 144292 occludin/ELL-like
1 1 1 0 SCOP 69848 LCCL domain
1 1 1 0 SCOP 140586 Dcp2 domain-like
1 1 1 0 SCOP 47802 DNA polymerase beta, N-terminal domain-like
1 1 1 0 SCOP 102741 Obg GTP-binding protein C-terminal domain
1 1 1 0 SCOP 47055 TAF(II)230 TBP-binding fragment
1 1 1 0 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 160996 HI0933 insert domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain

Jump to [ Top of page · Assignment statistics ]


The following superfamilies have one or more weak hits:

SCOP superfamily Troponin coil-coiled subunits
SCOP superfamily Head morphogenesis protein gp7
SCOP superfamily Zinc finger domain of DNA polymerase-alpha
SCOP superfamily Notch domain
SCOP superfamily Mollusk pheromone
SCOP superfamily Neurotransmitter-gated ion-channel transmembrane pore
SCOP superfamily YajQ-like
SCOP superfamily MTH1187/YkoF-like
SCOP superfamily Hypothetical protein VC0424
SCOP superfamily CoA-transferase family III (CaiB/BaiF)
SCOP superfamily Adsorption protein p2
SCOP superfamily Collagen-binding domain
SCOP superfamily Gametocyte protein Pfg27
SCOP superfamily TorD-like
SCOP superfamily Antibiotic binding domain of TipA-like multidrug resistance regulators
SCOP superfamily N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
SCOP superfamily post-HMGL domain-like
SCOP superfamily Satellite viruses
SCOP superfamily Group I dsDNA viruses
SCOP superfamily ssDNA viruses
SCOP superfamily Apolipoprotein A-II
SCOP superfamily Cysteine-rich DNA binding domain, (DM domain)
SCOP superfamily Apical membrane antigen 1
SCOP superfamily L-A virus major coat protein
SCOP superfamily OsmC-like
SCOP superfamily Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
SCOP superfamily SEA domain
SCOP superfamily Probable GTPase Der, C-terminal domain
SCOP superfamily GckA/TtuD-like
SCOP superfamily BAH domain
SCOP superfamily Viral chemokine binding protein m3
SCOP superfamily Tp47 lipoprotein, middle and C-terminal domains
SCOP superfamily Crustacean CHH/MIH/GIH neurohormone
SCOP superfamily F1F0 ATP synthase subunit B, membrane domain
SCOP superfamily Subunit IX of photosystem I reaction centre, PsaJ
SCOP superfamily Cytochrome c oxidase subunit III-like
SCOP superfamily Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
SCOP superfamily ABC transporter involved in vitamin B12 uptake, BtuC
SCOP superfamily Transmembrane di-heme cytochromes
SCOP superfamily Gated mechanosensitive channel
SCOP superfamily Adenylylcyclase toxin (the edema factor)
SCOP superfamily Rad50 coiled-coil Zn hook
SCOP superfamily Chemotaxis phosphatase CheZ
SCOP superfamily Rotavirus NSP2 fragment, N-terminal domain
SCOP superfamily YhbC-like, N-terminal domain
SCOP superfamily DsrEFH-like
SCOP superfamily Monomethylamine methyltransferase MtmB
SCOP superfamily Dipeptidyl peptidase I (cathepsin C), exclusion domain
SCOP superfamily V-region of surface antigen I/II (SA I/II, PAC)
SCOP superfamily Aconitase B, N-terminal domain
SCOP superfamily Variable surface antigen VlsE
SCOP superfamily C-terminal domain of PLC-beta
SCOP superfamily Head and neck region of the ectodomain of NDV fusion glycoprotein
SCOP superfamily NSP3 homodimer
SCOP superfamily GTP cyclohydrolase I feedback regulatory protein, GFRP
SCOP superfamily Type III secretory system chaperone-like
SCOP superfamily Cloacin translocation domain
SCOP superfamily Cell wall binding repeat
SCOP superfamily Quinohemoprotein amine dehydrogenase A chain, domain 3
SCOP superfamily gp5 N-terminal domain-like
SCOP superfamily Nucleoplasmin-like core domain
SCOP superfamily Quinohemoprotein amine dehydrogenase C chain
SCOP superfamily AhpD-like
SCOP superfamily Bcr-Abl oncoprotein oligomerization domain
SCOP superfamily RecG, N-terminal domain
SCOP superfamily Protein-L-isoaspartyl O-methyltransferase, C-terminal domain
SCOP superfamily Rho N-terminal domain-like
SCOP superfamily F1 ATPase inhibitor, IF1, C-terminal domain
SCOP superfamily Intermediate filament protein, coiled coil region
SCOP superfamily Cellulose docking domain, dockering
SCOP superfamily Phase 1 flagellin
SCOP superfamily DNA-binding domain of intron-encoded endonucleases
SCOP superfamily CNF1/YfiH-like putative cysteine hydrolases
SCOP superfamily Hsp33 domain
SCOP superfamily SirA-like
SCOP superfamily Chorismate lyase-like
SCOP superfamily Dipeptide transport protein
SCOP superfamily Methuselah ectodomain
SCOP superfamily Ribonuclease domain of colicin E3
SCOP superfamily Sortase
SCOP superfamily SAND domain-like
SCOP superfamily Cytolysin/lectin
SCOP superfamily Nicotinic receptor ligand binding domain-like
SCOP superfamily Ganglioside M2 (gm2) activator
SCOP superfamily Flagellar transcriptional activator FlhD
SCOP superfamily Frizzled cysteine-rich domain
SCOP superfamily Type I dockerin domain
SCOP superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain
SCOP superfamily Clostridium neurotoxins, "coiled-coil" domain
SCOP superfamily Variant surface glycoprotein (N-terminal domain)
SCOP superfamily Virus ectodomain
SCOP superfamily Influenza hemagglutinin (stalk)
SCOP superfamily N-terminal coiled coil domain from apc
SCOP superfamily Fibritin
SCOP superfamily Outer membrane lipoprotein
SCOP superfamily Multimerization domain of the phosphoprotein from sendai virus
SCOP superfamily Delta-sleep-inducing peptide immunoreactive peptide
SCOP superfamily XRCC4, C-terminal oligomerization domain
SCOP superfamily Fibrinogen coiled-coil and central regions
SCOP superfamily Chicken cartilage matrix protein
SCOP superfamily Inhibitor of apoptosis (IAP) repeat
SCOP superfamily Zn-binding domains of ADDBP
SCOP superfamily Ada DNA repair protein, N-terminal domain (N-Ada 10)
SCOP superfamily Zinc domain conserved in yeast copper-regulated transcription factors
SCOP superfamily Metallothionein
SCOP superfamily Hypothetical protein MTH1184
SCOP superfamily Zn2/Cys6 DNA-binding domain
SCOP superfamily HIPIP (high potential iron protein)
SCOP superfamily Invertebrate chitin-binding proteins
SCOP superfamily Carboxypeptidase inhibitor
SCOP superfamily FnI-like domain
SCOP superfamily Heparin-binding domain from vascular endothelial growth factor
SCOP superfamily Methylamine dehydrogenase, L chain
SCOP superfamily Crisp domain-like
SCOP superfamily Complement control module/SCR domain
SCOP superfamily Cystine-knot cytokines
SCOP superfamily Kringle-like
SCOP superfamily Crambin-like
SCOP superfamily LDL receptor-like module
SCOP superfamily Neurotoxin III (ATX III)
SCOP superfamily Amb V allergen
SCOP superfamily Midkine
SCOP superfamily PMP inhibitors
SCOP superfamily Elafin-like
SCOP superfamily Bowman-Birk inhibitor, BBI
SCOP superfamily Colipase-like
SCOP superfamily Cellulose-binding domain
SCOP superfamily Neurotoxin B-IV
SCOP superfamily Anthrax protective antigen
SCOP superfamily Viral glycoprotein, central and dimerisation domains
SCOP superfamily Perfringolysin
SCOP superfamily Leukocidin-like
SCOP superfamily Outer membrane efflux proteins (OEP)
SCOP superfamily Porins
SCOP superfamily Bcl-2 inhibitors of programmed cell death
SCOP superfamily delta-Endotoxin (insectocide), N-terminal domain
SCOP superfamily Colicin
SCOP superfamily Replication terminator protein (Tus)
SCOP superfamily Major capsid protein gp5
SCOP superfamily Baseplate structural protein gp11
SCOP superfamily Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
SCOP superfamily Methionine synthase activation domain-like
SCOP superfamily gp120 core
SCOP superfamily Fibrinogen C-terminal domain-like
SCOP superfamily SRCR-like
SCOP superfamily SMAD MH1 domain
SCOP superfamily Pyruvoyl-dependent histidine and arginine decarboxylases
SCOP superfamily Nitrile hydratase alpha chain
SCOP superfamily PheT/TilS domain
SCOP superfamily Sporulation response regulatory protein Spo0B
SCOP superfamily N-acetylmuramoyl-L-alanine amidase-like
SCOP superfamily beta-lactamase-inhibitor protein, BLIP
SCOP superfamily HPr-like
SCOP superfamily RNA bacteriophage capsid protein
SCOP superfamily tRNA-intron endonuclease N-terminal domain-like
SCOP superfamily Nucleotide cyclase
SCOP superfamily Pili subunits
SCOP superfamily Superantigen toxins, C-terminal domain
SCOP superfamily Prion-like
SCOP superfamily Microbial ribonucleases
SCOP superfamily "Helical backbone" metal receptor
SCOP superfamily Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
SCOP superfamily HybD-like
SCOP superfamily Methylated DNA-protein cysteine methyltransferase domain
SCOP superfamily Nitrogenase accessory factor-like
SCOP superfamily TolB, N-terminal domain
SCOP superfamily RNA 3'-terminal phosphate cyclase, RPTC, insert domain
SCOP superfamily PTS system IIB component-like
SCOP superfamily Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
SCOP superfamily N-(deoxy)ribosyltransferase-like
SCOP superfamily Cobalamin (vitamin B12)-binding domain
SCOP superfamily Barstar-related
SCOP superfamily Cobalamin (vitamin B12)-dependent enzymes
SCOP superfamily E2 regulatory, transactivation domain
SCOP superfamily Cyanovirin-N
SCOP superfamily Head decoration protein D (gpD, major capsid protein D)
SCOP superfamily Insect cysteine-rich antifreeze protein
SCOP superfamily delta-Endotoxin (insectocide), middle domain
SCOP superfamily Bacteriochlorophyll A protein
SCOP superfamily Oncogene products
SCOP superfamily mu transposase, C-terminal domain
SCOP superfamily Myosin S1 fragment, N-terminal domain
SCOP superfamily C-terminal domain of transcriptional repressors
SCOP superfamily EV matrix protein
SCOP superfamily Spermadhesin, CUB domain
SCOP superfamily TNF-like
SCOP superfamily Virus attachment protein globular domain
SCOP superfamily Viral protein domain
SCOP superfamily Group II dsDNA viruses VP
SCOP superfamily PHM/PNGase F
SCOP superfamily alpha-Amylase inhibitor tendamistat
SCOP superfamily p53-like transcription factors
SCOP superfamily CBD9-like
SCOP superfamily PKD domain
SCOP superfamily Immunoglobulin
SCOP superfamily Moesin tail domain
SCOP superfamily Tetraspanin
SCOP superfamily Fungal elicitin
SCOP superfamily Serum albumin-like
SCOP superfamily Nuclear receptor ligand-binding domain
SCOP superfamily Tetracyclin repressor-like, C-terminal domain
SCOP superfamily gene 59 helicase assembly protein
SCOP superfamily Cytochrome c oxidase subunit E
SCOP superfamily Bacterial muramidases
SCOP superfamily Ras GEF
SCOP superfamily Aldehyde ferredoxin oxidoreductase, C-terminal domains
SCOP superfamily Class II MHC-associated invariant chain ectoplasmic trimerization domain
SCOP superfamily Chondroitin AC/alginate lyase
SCOP superfamily DBL homology domain (DH-domain)
SCOP superfamily Guanido kinase N-terminal domain
SCOP superfamily FliG
SCOP superfamily DEATH domain
SCOP superfamily Iron-dependent repressor protein, dimerization domain
SCOP superfamily Retrovirus capsid protein, N-terminal core domain
SCOP superfamily Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
SCOP superfamily Apolipophorin-III
SCOP superfamily Hepatitis B viral capsid (hbcag)
SCOP superfamily Retroviral matrix proteins
SCOP superfamily Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
SCOP superfamily lambda integrase-like, N-terminal domain
SCOP superfamily C-terminal domain of RNA polymerase alpha subunit
SCOP superfamily Domain of early E2A DNA-binding protein, ADDBP
SCOP superfamily p53 tetramerization domain
SCOP superfamily Anaphylotoxins (complement system)
SCOP superfamily N-terminal domain of cbl (N-cbl)
SCOP superfamily STAT
SCOP superfamily Ribbon-helix-helix
SCOP superfamily Insect pheromone/odorant-binding proteins
SCOP superfamily A DNA-binding domain in eukaryotic transcription factors
SCOP superfamily Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
SCOP superfamily ROP protein
SCOP superfamily Retrovirus capsid dimerization domain-like
SCOP superfamily 4-helical cytokines
SCOP superfamily Bacterial GAP domain
SCOP superfamily TMV-like viral coat proteins
SCOP superfamily Hemerythrin-like
SCOP superfamily Cytochromes
SCOP superfamily Aspartate receptor, ligand-binding domain
SCOP superfamily Apolipoprotein
SCOP superfamily Mitochondrial import receptor subunit Tom20
SCOP superfamily Diol dehydratase, gamma subunit
SCOP superfamily Fertilization protein
SCOP superfamily T4 endonuclease V
SCOP superfamily RAP domain-like
SCOP superfamily Spectrin repeat
SCOP superfamily N-terminal Zn binding domain of HIV integrase
SCOP superfamily Epsilon subunit of F1F0-ATP synthase C-terminal domain
SCOP superfamily Eukaryotic DNA topoisomerase I, dispensable insert domain
SCOP superfamily HR1 repeat
SCOP superfamily GreA transcript cleavage protein, N-terminal domain
SCOP superfamily Gam-like
SCOP superfamily RILP dimerisation region
SCOP superfamily T-antigen specific domain-like
SCOP superfamily YfgJ-like
SCOP superfamily MetI-like
SCOP superfamily MgtE membrane domain-like
SCOP superfamily SNF-like
SCOP superfamily ATP synthase B chain-like
SCOP superfamily Cytochrome b559 subunits
SCOP superfamily Photosystem II reaction center protein I, PsbI
SCOP superfamily CV3147-like
SCOP superfamily SSO1389-like
SCOP superfamily MalF N-terminal region-like
SCOP superfamily FlhC-like
SCOP superfamily Jann2411-like
SCOP superfamily Rv2827c C-terminal domain-like
SCOP superfamily YehR-like
SCOP superfamily YNR034W-A-like
SCOP superfamily BRK domain-like
SCOP superfamily BLRF2-like
SCOP superfamily PG1857-like
SCOP superfamily NosL/MerB-like
SCOP superfamily Bacterial polysaccharide co-polymerase-like
SCOP superfamily EspE N-terminal domain-like
SCOP superfamily FlaG-like
SCOP superfamily NMB0488-like
SCOP superfamily YcgL-like
SCOP superfamily YegP-like
SCOP superfamily PH1570-like
SCOP superfamily XkdW-like
SCOP superfamily TBP-interacting protein-like
SCOP superfamily Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain
SCOP superfamily PA1994-like
SCOP superfamily AttH-like
SCOP superfamily HIN-2000 domain-like
SCOP superfamily YorP-like
SCOP superfamily NEAT domain-like
SCOP superfamily Lipase chaperone-like
SCOP superfamily MgtE N-terminal domain-like
SCOP superfamily TerB-like
SCOP superfamily MtlR-like
SCOP superfamily YheA/YmcA-like
SCOP superfamily FLJ32549 domain-like
SCOP superfamily BH2638-like
SCOP superfamily PG0775 C-terminal domain-like
SCOP superfamily DsbB-like
SCOP superfamily Bacillus cereus metalloprotein-like
SCOP superfamily HP0062-like
SCOP superfamily TM1646-like
SCOP superfamily SOCS box-like
SCOP superfamily Sec2 N-terminal region
SCOP superfamily MPN010-like
SCOP superfamily Viral leader polypeptide zinc finger
SCOP superfamily Heme iron utilization protein-like
SCOP superfamily Thermophilic metalloprotease-like
SCOP superfamily FdhE-like
SCOP superfamily Peptidoglycan deacetylase N-terminal noncatalytic region
SCOP superfamily CofE-like
SCOP superfamily AF2331-like
SCOP superfamily UbiD C-terminal domain-like
SCOP superfamily NE0471 N-terminal domain-like
SCOP superfamily DeoB insert domain-like
SCOP superfamily Phage tail protein-like
SCOP superfamily STIV B116-like
SCOP superfamily SARS receptor-binding domain-like
SCOP superfamily MK0786-like
SCOP superfamily FwdE-like
SCOP superfamily TM1622-like
SCOP superfamily Transposase IS200-like
SCOP superfamily Rv2632c-like
SCOP superfamily YefM-like
SCOP superfamily TTHA1013/TTHA0281-like
SCOP superfamily CinA-like
SCOP superfamily EAL domain-like
SCOP superfamily L,D-transpeptidase catalytic domain-like
SCOP superfamily YdhA-like
SCOP superfamily GatD N-terminal domain-like
SCOP superfamily Kinase-associated protein B-like
SCOP superfamily Atu1913-like
SCOP superfamily Duffy binding domain-like
SCOP superfamily DNA terminal protein
SCOP superfamily PriB N-terminal domain-like
SCOP superfamily TROVE domain-like
SCOP superfamily USP8 N-terminal domain-like
SCOP superfamily YidB-like
SCOP superfamily PA2201 C-terminal domain-like
SCOP superfamily AF0941-like
SCOP superfamily IpaD-like
SCOP superfamily Type III secretion system domain
SCOP superfamily FlgN-like
SCOP superfamily TM0693-like
SCOP superfamily BAS1536-like
SCOP superfamily MAST3 pre-PK domain-like
SCOP superfamily LemA-like
SCOP superfamily EsxAB dimer-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily YppE-like
SCOP superfamily ChaB-like
SCOP superfamily PPK N-terminal domain-like
SCOP superfamily Rabenosyn-5 Rab-binding domain-like
SCOP superfamily SPy1572-like
SCOP superfamily Synuclein
SCOP superfamily HSP33 redox switch-like
SCOP superfamily Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain
SCOP superfamily Connexin43
SCOP superfamily Proton glutamate symport protein
SCOP superfamily RalF, C-terminal domain
SCOP superfamily WWE domain
SCOP superfamily GTF2I-like repeat
SCOP superfamily FumA C-terminal domain-like
SCOP superfamily Flagellar hook protein flgE
SCOP superfamily Beta-galactosidase LacA, domain 3
SCOP superfamily Hypothetical protein PA1324
SCOP superfamily Hypothetical protein MPN330
SCOP superfamily YfbU-like
SCOP superfamily EspA/CesA-like
SCOP superfamily Hypothetical protein YqbG
SCOP superfamily XseB-like
SCOP superfamily NADH pyrophosphatase intervening domain
SCOP superfamily DNA methylase specificity domain
SCOP superfamily TrkA C-terminal domain-like
SCOP superfamily Fzo-like conserved region
SCOP superfamily Coronavirus S2 glycoprotein
SCOP superfamily Geminin coiled-coil domain
SCOP superfamily YAP1 redox domain
SCOP superfamily Resistin
SCOP superfamily Hormone receptor domain
SCOP superfamily Pollen allergen ole e 6
SCOP superfamily OmpH-like
SCOP superfamily VP4 membrane interaction domain
SCOP superfamily Tsx-like channel
SCOP superfamily Urocanase
SCOP superfamily Recombination protein RecR
SCOP superfamily Putative modulator of DNA gyrase, PmbA/TldD
SCOP superfamily Hemolytic lectin CEL-III, C-terminal domain
SCOP superfamily Hypothetical protein PF0899
SCOP superfamily CutC-like
SCOP superfamily BTV NS2-like ssRNA-binding domain
SCOP superfamily GDNF receptor-like
SCOP superfamily Her-1
SCOP superfamily Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
SCOP superfamily DinB/YfiT-like putative metalloenzymes
SCOP superfamily CAPPD, an extracellular domain of amyloid beta A4 protein
SCOP superfamily Hypothetical protein D-63
SCOP superfamily Bacteriocin immunity protein-like
SCOP superfamily Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
SCOP superfamily PhoU-like
SCOP superfamily KorB DNA-binding domain-like
SCOP superfamily DnaK suppressor protein DksA, alpha-hairpin domain
SCOP superfamily G protein-binding domain
SCOP superfamily TSP type-3 repeat
SCOP superfamily Sec-C motif
SCOP superfamily Hypothetical protein Ta0289 C-terminal domain
SCOP superfamily Necrosis inducing protein 1, NIP1
SCOP superfamily Plexin repeat
SCOP superfamily Respiratory nitrate reductase 1 gamma chain
SCOP superfamily PetN subunit of the cytochrome b6f complex
SCOP superfamily PetL subunit of the cytochrome b6f complex
SCOP superfamily 39 kda initiator binding protein, IBP39, C-terminal domains
SCOP superfamily Antivirulence factor
SCOP superfamily 2-methylcitrate dehydratase PrpD
SCOP superfamily Hypothetical protein PH1602
SCOP superfamily MoaD-related protein, C-terminal domain
SCOP superfamily Roadblock/LC7 domain
SCOP superfamily OmpA-like
SCOP superfamily Nucleocapsid protein dimerization domain
SCOP superfamily General secretion pathway protein M, EpsM
SCOP superfamily Hypothetical protein TT1725
SCOP superfamily Bacterial fluorinating enzyme, N-terminal domain
SCOP superfamily Alpha-2,3/8-sialyltransferase CstII
SCOP superfamily DNA polymerase III psi subunit
SCOP superfamily Creatininase
SCOP superfamily Adhesin YadA, collagen-binding domain
SCOP superfamily Apyrase
SCOP superfamily Hydrophobin II, HfbII
SCOP superfamily Anti-sigma factor FlgM
SCOP superfamily Stathmin
SCOP superfamily Hypothetical protein ST1625
SCOP superfamily C-terminal domain of Ku80
SCOP superfamily Hsp90 co-chaperone CDC37
SCOP superfamily Superantigen MAM
SCOP superfamily L27 domain
SCOP superfamily Flavivirus capsid protein C
SCOP superfamily HAND domain of the nucleosome remodeling ATPase ISWI
SCOP superfamily Flagellar export chaperone FliS
SCOP superfamily Typo IV secretion system protein TraC
SCOP superfamily SPOC domain-like
SCOP superfamily Chemosensory protein Csp2
SCOP superfamily IP3 receptor type 1 binding core, domain 2
SCOP superfamily Plant proteinase inhibitors
SCOP superfamily Kazal-type serine protease inhibitors

Jump to [ Top of page · Assignment statistics ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.